1. Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins.
- Author
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Bonacci T, Audebert S, Camoin L, Baudelet E, Bidaut G, Garcia M, Witzel II, Perkins ND, Borg JP, Iovanna JL, and Soubeyran P
- Subjects
- Blotting, Western, Cell Line, Tumor, Chromatography, Liquid, Deoxycytidine analogs & derivatives, Deoxycytidine pharmacology, HEK293 Cells, Humans, Intracellular Signaling Peptides and Proteins metabolism, Microscopy, Fluorescence, NEDD8 Protein, Pancreatic Neoplasms genetics, Pancreatic Neoplasms metabolism, Pancreatic Neoplasms pathology, Phosphatidylinositol 3-Kinases metabolism, Proteome metabolism, Proteomics methods, Proto-Oncogene Proteins c-akt metabolism, RNA-Binding Proteins, SUMO-1 Protein genetics, SUMO-1 Protein metabolism, TOR Serine-Threonine Kinases metabolism, Tandem Mass Spectrometry, Ubiquitin genetics, Ubiquitins genetics, Ubiquitins metabolism, Wnt1 Protein metabolism, Gemcitabine, Antineoplastic Agents pharmacology, Protein Processing, Post-Translational drug effects, Proteins metabolism, Signal Transduction drug effects, Ubiquitin metabolism
- Abstract
Pancreatic ductal adenocarcinoma (PDAC) is a very aggressive malignancy characterized by an excessive resistance to all known anticancer therapies, a still largely elusive phenomenon. To identify original mechanisms, we have explored the role of post-translational modifications (PTMs) mediated by members of the ubiquitin family. Although alterations of these pathways have been reported in different cancers, no methodical search for these kinds of anomalies has been performed so far. Therefore, we studied the ubiquitin-, Nedd8-, and SUMO1-specific proteomes of a pancreatic cancer cell line (MiaPaCa-2) and identified changes induced by gemcitabine, the standard PDAC's chemotherapeutic drug. These PTMs profiles contained both known major substrates of all three modifiers as well as original ones. Gemcitabine treatment altered the PTM profile of proteins involved in various biological functions, some known cancer associated genes, many potentially cancer-associated genes, and several cancer-signaling networks, including canonical and noncanonical WNT and PI3K/Akt/MTOR pathways. Some of these altered PTMs formed groups of functionally and physically associated proteins. Importantly, we could validate the gemcitabine-induced PTMs variations of relevant candidates and we could demonstrate the biological significance of such altered PTMs by studying in detail the sumoylation of SNIP1, one of these new targets.
- Published
- 2014
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