1. Structure-based design of low-nanomolar PIM kinase inhibitors.
- Author
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Ishchenko A, Zhang L, Le Brazidec JY, Fan J, Chong JH, Hingway A, Raditsis A, Singh L, Elenbaas B, Hong VS, Marcotte D, Silvian L, Enyedy I, and Chao J
- Subjects
- Binding Sites, Crystallography, X-Ray, Hydrogen Bonding, Molecular Dynamics Simulation, Protein Binding, Protein Isoforms antagonists & inhibitors, Protein Isoforms metabolism, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors metabolism, Protein Structure, Tertiary, Proto-Oncogene Proteins c-pim-1 metabolism, Static Electricity, Structure-Activity Relationship, Drug Design, Protein Kinase Inhibitors chemistry, Proto-Oncogene Proteins c-pim-1 antagonists & inhibitors
- Abstract
PIM kinases are implicated in variety of cancers by promoting cell survival and proliferation and are targets of interest for therapeutic intervention. We have identified a low-nanomolar pan-PIM inhibitor (PIM1/2/3 potency 5:14:2nM) using structure based modeling. The crystal structure of this compound with PIM1 confirmed the predicted binding mode and protein-ligand interactions except those in the acidic ribose pocket. We show the SAR suggesting the importance of having a hydrogen bond donor in this pocket for inhibiting PIM2; however, this interaction is not important for inhibiting PIM1 or PIM3. In addition, we report the discovery of a new class of PIM inhibitors by using computational de novo design tool implemented in MOE software (Chemical Computing Group). These inhibitors have a different interaction profile., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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