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In this paper, we propose two new lower bounds on graph bandwidth and cyclic bandwidth based on semidefinite programming (SDP) relaxations of the quadratic assignment problem. We compare the new bounds with two other SDP bounds reported in [A. Blum, G. Konjevod, R. Ravi, and S. Vempala,Semi-definite relaxations for minimum bandwidth and other vertex-ordering problems, Theoret. Comput. Sci. 235(1) (2000), pp. 25–42; J. Povh and F. Rendl,A copositive programming approach to graph partitioning, SIAM J. Optim. 18(1) (2007), pp. 223–241]. [ABSTRACT FROM AUTHOR]

Abstract: Motivated by problems in comparative genomics and paleogenomics, we study the computational complexity of the Gapped Consecutive-Ones Property (-C1P) Problem: given a binary matrix and two integers and , decide if the columns of can be permuted such that each row contains at most blocks of ones and no two neighboring blocks of ones are separated by a gap of more than zeros. The classical C1P decision problem, which is known to be polynomial-time solvable is equivalent to the -C1P problem. We extend our earlier results on this problem [C. Chauve, J. Mauch, M. Patterson, On the gapped consecutive-ones property, in: Proceedings of the European Conference on Combinatorics, Graphs Theory and Applications (EuroComb), in: Electronic Notes in Discrete Mathematics, vol. 34, 2009, pp. 121–125] to show that for every , the -C1P Problem is NP-complete, and that for every , the -C1P Problem is NP-complete. On the positive side, we also show that if and the maximum degree of are constant, the problem is related to the classical Graph Bandwidth Problem and can be solved in polynomial time using a variant of an algorithm of Saxe [J.B. Saxe, Dynamic-programming algorithms for recognizing small-bandwidth graphs in polynomial time, SIAM Journal on Algebraic and Discrete Methods 1 (4) (1980) 363–369]. [Copyright &y& Elsevier]