4 results on '"East, Christine E."'
Search Results
2. Genome-Wide Association Scan Identifies a Risk Locus for Preeclampsia on 2q14, Near the Inhibin, Beta B Gene.
- Author
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Johnson, Matthew P., Brennecke, Shaun P., East, Christine E., Göring, Harald H. H., Kent, Jack W. Jr., Dyer, Thomas D., Said, Joanne M., Roten, Linda T., Iversen, Ann-Charlotte, Abraham, Lawrence J., Heinonen, Seppo, Kajantie, Eero, Kere, Juha, Kivinen, Katja, Pouta, Anneli, Laivuori, Hannele, Austgulen, Rigmor, Blangero, John, and Moses, Eric K.
- Subjects
PREECLAMPSIA ,INHIBIN ,LOCUS (Genetics) ,LINKAGE disequilibrium - Abstract
Elucidating the genetic architecture of preeclampsia is a major goal in obstetric medicine. We have performed a genome-wide association study (GWAS) for preeclampsia in unrelated Australian individuals of Caucasian ancestry using the Illumina OmniExpress- 12 BeadChip to successfully genotype 648,175 SNPs in 538 preeclampsia cases and 540 normal pregnancy controls. Two SNP associations (rs7579169, p =3.58x10
-7 , OR=1.57; rs12711941, p=4.26x10-7 , OR=1.56) satisfied our genome-wide significance threshold (modified Bonferroni p<5.11x10-7 ). These SNPs reside in an intergenic region less than 15 kb downstream from the 39 terminus of the Inhibin, beta B (INHBB) gene on 2q14.2. They are in linkage disequilibrium (LD) with each other (r2 >0.92), but not (r2 <0.80) with any other genotyped SNP ±250 kb. DNA re-sequencing in and around the INHBB structural gene identified an additional 25 variants. Of the 21 variants that we successfully genotyped back in the case-control cohort the most significant association observed was for a third intergenic SNP (rs7576192, p = 1.48x10-7 , OR= 1.59) in strong LD with the two significant GWAS SNPs (r2 .0.92). We attempted to provide evidence of a putative regulatory role for these SNPs using bioinformatic analyses and found that they all reside within regions of low sequence conservation and/or low complexity, suggesting functional importance is low. We also explored themRNA expression in decidua of genes±500 kb of INHBB and found a nominally significant correlation between a transcript encoded by the EPB41L5 gene, ∼250 kb centromeric to INHBB, and preeclampsia (p = 0.03). We were unable to replicate the associations shown by the significant GWAS SNPs in case-control cohorts from Norway and Finland, leading us to conclude that it is more likely that these SNPs are in LD with as yet unidentified causal variant(s). [ABSTRACT FROM AUTHOR]- Published
- 2012
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3. Genetic and Molecular Functional Characterization of Variants within TNFSF13B, a Positional Candidate Preeclampsia Susceptibility Gene on 13q.
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Fenstad, Mona H., Johnson, Matthew P., Roten, Linda T., Aas, Per A., Forsmo, Siri, Klepper, Kjetil, East, Christine E., Abraham, Lawrence J., Blangero, John, Brennecke, Shaun P., Austgulen, Rigmor, and Moses, Eric K.
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PREECLAMPSIA ,OBSTETRICS ,LINKAGE disequilibrium ,GENETIC engineering ,CELL nuclei ,WOMEN'S health - Abstract
Background: Preeclampsia is a serious pregnancy complication, demonstrating a complex pattern of inheritance. The elucidation of genetic liability to preeclampsia remains a major challenge in obstetric medicine. We have adopted a positional cloning approach to identify maternal genetic components, with linkages previously demonstrated to chromosomes 2q, 5q and 13q in an Australian/New Zealand familial cohort. The current study aimed to identify potential functional and structural variants in the positional candidate gene TNFSF13B under the 13q linkage peak and assess their association status with maternal preeclampsia genetic susceptibility. Methodology/Principal Findings: The proximal promoter and coding regions of the positional candidate gene TNFSF13B residing within the 13q linkage region was sequenced using 48 proband or founder individuals from Australian/New Zealand families. Ten sequence variants (nine SNPs and one single base insertion) were identified and seven SNPs were successfully genotyped in the total Australian/New Zealand family cohort (74 families/480 individuals). Borderline association to preeclampsia (p = 0.0153) was observed for three rare SNPs (rs16972194, rs16972197 and rs56124946) in strong linkage disequilibrium with each other. Functional evaluation by electrophoretic mobility shift assays showed differential nuclear factor binding to the minor allele of the rs16972194 SNP, residing upstream of the translation start site, making this a putative functional variant. The observed genetic associations were not replicated in a Norwegian case/control cohort (The Nord-Trøndelag Health Study (HUNT2), 851 preeclamptic and 1,440 non-preeclamptic women). Conclusion/Significance: TNFSF13B has previously been suggested to contribute to the normal immunological adaption crucial for a successful pregnancy. Our observations support TNFSF13B as a potential novel preeclampsia susceptibility gene. We discuss a possible role for TNFSF13B in preeclampsia pathogenesis, and propose the rs16972194 variant as a candidate for further functional evaluation. [ABSTRACT FROM AUTHOR]
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- 2010
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4. The ERAP2 gene is associated with preeclampsia in Australian and Norwegian populations.
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Johnson, Matthew P., Roten, Linda T., Dyer, Thomas D., East, Christine E., Forsmo, Siri, Blangero, John, Brennecke, Shaun P., Austgulen, Rigmor, and Moses, Eric K.
- Subjects
PREECLAMPSIA ,PREGNANCY complications ,HYPERTENSION ,PROTEINURIA ,CHROMOSOMES ,ENDOPLASMIC reticulum ,AMINOPEPTIDASES - Abstract
Preeclampsia is a heritable pregnancy disorder that presents new onset hypertension and proteinuria. We have previously reported genetic linkage to preeclampsia on chromosomes 2q, 5q and 13q in an Australian/New Zealand (Aust/NZ) familial cohort. This current study centered on identifying the susceptibility gene(s) at the 5q locus. We first prioritized candidate genes using a bioinformatic tool designed for this purpose. We then selected a panel of known SNPs within ten prioritized genes and genotyped them in an extended set of the Aust/NZ families and in a very large, independent Norwegian case/control cohort (1,139 cases, 2,269 controls). In the Aust/NZ cohort we identified evidence of a genetic association for the endoplasmic reticulum aminopeptidase 1 ( ERAP1) gene (rs3734016, P
uncorr = 0.009) and for the endoplasmic reticulum aminopeptidase 2 ( ERAP2) gene (rs2549782, Puncorr = 0.004). In the Norwegian cohort we identified evidence of a genetic association for ERAP1 (rs34750, Puncorr = 0.011) and for ERAP2 (rs17408150, Puncorr = 0.009). The ERAP2 SNPs in both cohorts remained statistically significant (rs2549782, Pcorr = 0.018; rs17408150, Pcorr = 0.039) after corrections at an experiment-wide level. The ERAP1 and ERAP2 genes encode enzymes that are reported to play a role in blood pressure regulation and essential hypertension in addition to innate immune and inflammatory responses. Perturbations within vascular, immunological and inflammatory pathways constitute important physiological mechanisms in preeclampsia pathogenesis. We herein report a novel preeclampsia risk locus, ERAP2, in a region of known genetic linkage to this pregnancy-specific disorder. [ABSTRACT FROM AUTHOR]- Published
- 2009
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