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Change in diversity of fossil pollen through time is used as a surrogate for biodiversity history. However, there have been few studies to explore the sensitivity of the measured pollen diversity to vegetation changes and the relationship between pollen diversity and plant diversity. This paper presents results of a study to assess the relationship between pollen diversity and relative abundance of pollen from different altitudinal vegetation belts (subandean forest, Andean forest, subparamo and grassparamo) in three records from the tropical Andes in Colombia. The results indicated that plant diversity in the vegetation declined with altitude and pollen diversity is positively correlated to the abundance of pollen from lower altitude vegetation belts and negatively correlated to that from the grassparamo. These results, therefore, suggest that pollen diversity coarsely reflects the diversity of the surrounding vegetation. Using this interpretation, we were able to predict changes in plant diversity over the past 430000 years in the Colombian Andes. Results indicated that under warmer climatic conditions, more species-diverse vegetation of low elevation moved upslope to contribute more pollen diversity to the study sites, and under colder conditions, species-poor grassparamo moved downslope and observed pollen diversity was lower. This study concludes that fossil pollen diversity may provide an important proxy to reconstruct the temporal changes in plant diversity.