Search

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, a panel of foxtail millet elite varieties, which were released in the last sixty years in different geographical regions of China, was characterized using microsatellite markers (SSRs). A clear separation of two subpopulations corresponding to the two eco-geographical regions of foxtail millet production in China was identified by the dataset, which also indicated that in more recently released elite varieties, large quantities of accessions have been transferred from spring-sowing to summer-sowing ecotypes, likely as a result of breeding response to planting configurations. An association mapping study was conducted to identify loci controlling traits of major agronomic interest. Furthermore, selective sweeps involved in improvement of foxtail millet were identified as multi-diverse minor effect loci controlling different agronomic traits during the long-term improvement of elite varieties. Our results highlight the effect of transition of planting configuration and breeding preference on genetic evolvement of crop species. [ABSTRACT FROM AUTHOR]

We present a new biostratigraphically constrained carbon isotope record from the Lali section (South China) to document perturbations in the Late Devonian carbon cycle. Positive carbon isotope excursions (CIEs) are most important components of the Late Devonian long-term carbon isotope cycle: Frasnes (+2‰), Middlesex (+1‰), Lower Kellwasser (+3‰), Upper Kellwasser (+3‰) and Upper annulata (+1‰) events, as well as a small positive CIE (+1‰) in the Famennian expansa-aculeatus zones were recorded. It is noteworthy that no significant carbon isotope shifts are found for the Rhinestreet, Nehden, Condroz and Enkeberg events. The Late Devonian long-term carbon isotope curve from South China is in agreement with contemporaneous world-wide trends in Euramerica (Europe and North America) and Gondwana. Global data suggests a higher Famennian δ13C carb baseline (about +2.5 ‰) than that of the Frasnian (about +1‰). Previous studies have related the positive CIE to ocean anoxia, but its ultimate driver remains unclear. Other interpretations include the spread of land plants or increased tectonic activity, but these explanations are questionable due to the relative short durations of the CIEs compared to long-term processes of plant evolution and plant cover extension as well as tectonic movements. • The Late Devonian long-term carbon isotope curve in South China is in accord with contemporaneous world-wide trends. • Numerous Late Devonian bio-events are characterized positive carbon isotope excursions. • The Famennian δ13Ccarb baseline (about +2.5 ‰) is higher than in the Frasnian (about +1 ‰). • Ocean anoxia, spread of land plants and global tectonics may contribute to carbon isotope excursions. [ABSTRACT FROM AUTHOR]

Ogura-type cytoplasmic male sterility (Ogura-CMS) has been widely used in the hybrid breeding industry for cruciferous vegetables. Turnip (Brassica rapa ssp. rapifera) is one of the most important local cruciferous vegetables in China, cultivated for its fleshy root as a flat disc. Here, morphological characteristics of an Ogura-CMS line ‘BY10-2A’ and its maintainer fertile (MF) line ‘BY10-2B’ of turnip were investigated. Ogura-CMS turnip showed a reduction in the size of the fleshy root, and had distinct defects in microspore development and tapetum degeneration during the transition from microspore mother cells to tetrads. Defective microspore production and premature tapetum degeneration during microgametogenesis resulted in short filaments and withered white anthers, leading to complete male sterility of the Ogura-CMS line. Additionally, the mechanism regulating Ogura-CMS in turnip was investigated using inflorescence transcriptome analyses of the Ogura-CMS and MF lines. The de novo assembly resulted in a total of 84,132 unigenes. Among them, 5,117 differentially expressed genes (DEGs) were identified, including 1,339 up- and 3,778 down-regulated genes in the Ogura-CMS line compared to the MF line. A number of functionally known members involved in anther development and microspore formation were addressed in our DEG pool, particularly genes regulating tapetum programmed cell death (PCD), and associated with pollen wall formation. Additionally, 185 novel genes were proposed to function in male organ development based on GO analyses, of which 26 DEGs were genotype-specifically expressed. Our research provides a comprehensive foundation for understanding anther development and the CMS mechanism in turnip. [ABSTRACT FROM AUTHOR]

Photosynthetic-nitrogen use efficiency (PNUE) is a useful trait to characterize leaf physiology and survival strategy. PNUE can also be considered as part of ‘leaf economics spectrum’ interrelated with leaf nutrient concentrations, photosynthesis and respiration, leaf life-span and dry-mass investment. However, few studies have paid attention to PNUE of N-fixing tree seedlings in subtropical China. In this study, we investigated the differences in PNUE, leaf nitrogen (N) allocation, and mesophyll conductance (gm) in Dalbergia odorifera and Erythrophleum fordii (N-fixing trees), and Betula alnoides and Castanopsis hystrix (non-N-fixing trees). PNUE of D. odorifera and E. fordii were significantly lower than those of B. alnoides and C. hystrix mainly because of their allocation of a lower fraction of leaf N to Rubisco (PR) and bioenergetics (PB). Mesophyll conductance had a significant positive correlation with PNUE in D. odorifera, E. fordii, and B. alnoides, but the effect of gm on PNUE was different between species. The fraction of leaf N to cell wall (PCW) had a significant negative correlation with PR in B. alnoides and C. hystrix seedling leaves, but no correlation in D. odorifera and E. fordii seedling leaves, which may indicate that B. alnoides and C. hystrix seedling leaves did not have enough N to satisfy the demand from both the cell wall and Rubisco. Our results indicate that B. alnoides and C. hystrix may have a higher competitive ability in natural ecosystems with fertile soil, and D. odorifera and E. fordii may grow well in N-poor soil. Mixing these non-N-fixing and N-fixing trees for afforestation is useful for improving soil N utilization efficiency in the tropical forests. [ABSTRACT FROM AUTHOR]

In recent years, Apolygus lucorum has caused increasing damage to cotton and fruit trees in China. The salivary enzymes secreted by A. lucorum when sucking on host plants induce a series of biochemical reactions in plants, and the pre-oral digestion benefits the bug feeding. In this study, the food intake of A. lucorum from 1st instar nymphs to adults was measured, and the corresponding salivary activity of pectinase, amylase, cellulase, protease, polyphenol oxidase and peroxidase was determined. Daily food intake varied with developmental stage, peaking in 3rd and 4th instar nymphs. Pectinase, amylase, cellulase and protease were detected in both nymphal and adult saliva of A. lucorum, while neither polyphenol oxidase nor peroxidase was detected. Protease activity varied with food intake peaking at the 3rd-4th instar, and then slightly decreasing at the 5th instar. Levels of pectinase, amylase and cellulase increased significantly with the daily feeding level until the 3rd instar, corresponding with increasing damage to host plants. The activity of both cellulase and protease had a significant linear relationship with the average daily food intake. The increasing activity of enzymes in saliva explain stage-specific impacts of A. lucorum on the host plants, and suggest that optimal management of A. lucorum would be confined to its control threshold prior to the peak of daily feeding in the 3rd instar. [ABSTRACT FROM AUTHOR]

The spatial patterns of biodiversity and their underlying mechanisms have been an active area of research for a long time. In this study, a total of 63 samples (20m × 30m) were systematically established along elevation gradients on Mount Tai and Mount Lao, China. We explored altitudinal patterns of plant diversity in the two mountain systems. In order to understand the mechanisms driving current diversity patterns, we used phylogenetic approaches to detect the spatial patterns of phylogenetic diversity and phylogenetic structure along two elevation gradients. We found that total species richness had a monotonically decreasing pattern and tree richness had a unimodal pattern along the elevation gradients in the two study areas. However, altitudinal patterns in shrub richness and herbs richness were not consistent on the two mountains. At low elevation, anthropogenic disturbances contributed to the increase of plant diversity, especially for shrubs and herbs in understory layers, which are more sensitive to changes in microenvironment. The phylogenetic structure of plant communities exhibited an inverted hump-shaped pattern along the elevation gradient on Mount Tai, which demonstrates that environmental filtering is the main driver of plant community assembly at high and low elevations and inter-specific competition may be the main driver of plant community assembly in the middle elevations. However, the phylogenetic structure of plant communities did not display a clear pattern on Mount Lao where the climate is milder. Phylogenetic beta diversity and species beta diversity consistently increased with increasing altitudinal divergence in the two study areas. However, the altitudinal patterns of species richness did not completely mirror phylogenetic diversity patterns. Conservation areas should be selected taking into consideration the preservation of high species richness, while maximizing phylogenetic diversity to improve the potential for diversification in the future. [ABSTRACT FROM AUTHOR]

Carex diaoluoshanica, a new species of Carex sect. Lageniformes from Hainan, China, is described and illustrated. The new species is similar to C. breviscapa but differs in having wider leaves with the leaf base gradually narrowed, 5–10 cm long and petiolelike, culms subfiliform, with only two spikes, the lateral female spikes from near the culm base. [ABSTRACT FROM AUTHOR]

Background: Populus is an ecologically and economically important genus of trees, but distinguishing between wild species is relatively difficult due to extensive interspecific hybridization and introgression, and the high level of intraspecific morphological variation. The DNA barcoding approach is a potential solution to this problem. Methodology/Principal Findings: Here, we tested the discrimination power of five chloroplast barcodes and one nuclear barcode (ITS) among 95 trees that represent 21 Populus species from western China. Among all single barcode candidates, the discrimination power is highest for the nuclear ITS, progressively lower for chloroplast barcodes matK (M), trnG-psbK (G) and psbK-psbI (P), and trnH-psbA (H) and rbcL (R); the discrimination efficiency of the nuclear ITS (I) is also higher than any two-, three-, or even the five-locus combination of chloroplast barcodes. Among the five combinations of a single chloroplast barcode plus the nuclear ITS, H+I and P+I differentiated the highest and lowest portion of species, respectively. The highest discrimination rate for the barcodes or barcode combinations examined here is 55.0% (H+I), and usually discrimination failures occurred among species from sympatric or parapatric areas. Conclusions/Significance: In this case study, we showed that when discriminating Populus species from western China, the nuclear ITS region represents a more promising barcode than any maternally inherited chloroplast region or combination of chloroplast regions. Meanwhile, combining the ITS region with chloroplast regions may improve the barcoding success rate and assist in detecting recent interspecific hybridizations. Failure to discriminate among several groups of Populus species from sympatric or parapatric areas may have been the result of incomplete lineage sorting, frequent interspecific hybridizations and introgressions. We agree with a previous proposal for constructing a tiered barcoding system in plants, especially for taxonomic groups that have complex evolutionary histories (e.g. Populus). [ABSTRACT FROM AUTHOR]

Mounting evidence has shown strong linkage of root function with root branch order. However, it is not known whether this linkage is consistent in different species. Here, root anatomic traits of the first five branch order were examined in five species differing in plant phylogeny and growth form in tropical and subtropical forests of south China. In Paramichelia baillonii, one tree species in Magnoliaceae, the intact cortex as well as mycorrhizal colonization existed even in the fifth-order root suggesting the preservation of absorption function in the higher-order roots. In contrast, dramatic decreases of cortex thickness and mycorrhizal colonization were observed from lower- to higher-order roots in three other tree species, Cunninghamia lanceolata, Acacia auriculiformis and Gordonia axillaries, which indicate the loss of absorption function. In a fern, Dicranopteris dichotoma, there were several cortex layers with prominently thickened cell wall and no mycorrhizal colonization in the third- and fourth-order roots, also demonstrating the loss of absorptive function in higher-order roots. Cluster analysis using these anatomic traits showed a different classification of root branch order in P. baillonii from other four species. As for the conduit diameter-density relationship in higher-order roots, the mechanism underpinning this relationship in P. baillonii was different from that in other species. In lower-order roots, different patterns of coefficient of variance for conduit diameter and density provided further evidence for the two types of linkage of root function with root branch order. These linkages corresponding to two types of ephemeral root modules have important implication in the prediction of terrestrial carbon cycling, although we caution that this study was pseudo-replicated. Future studies by sampling more species can test the generality of these two types of linkage. [ABSTRACT FROM AUTHOR]

The study observed the pollen morphology and ontogeny of Maianthemum bifolium (L.) F.W. Schmidt and explored the development and structure of its anther wall using conventional paraffin section and histochemical techniques. The results showed that it has four anthers, consecutive cytokinesis, tetragonally arranged microspore tetrads, two-celled mature pollen grains, and a secretory tapetum. Fascicular crystals were found in the connective tissues and anther wall during pollen ontogeny. The distribution of carbohydrates and lipids changes regularly in the process of pollen development and is related to their physiological activities such as cell division and material synthesis. Under a light microscope, its pollen grains are ellipsoid and have a sulcus and exine with fine, reticulate ornamentation. [ABSTRACT FROM AUTHOR]

Hamatophyton verticillatum is one of the most widespread plants in the Late Devonian (Famennian) of South China. Using fossils from the coeval Yuelushan Formation, Yiyang District, northern Hunan Province, we reinvestigated this important plant. Its vegetative axes pseudomonopodially branch and possess ribbed internodes and nodes bearing undivided leaves or leaves with one division. Linear leaves are in whorls. Their tips taper or slightly expand and sometimes curve adaxially to form a hooklike shape. Although H. verticillatum has been reported by many workers, knowledge of its fertile characters is still problematic. This article shows that sporangial stalks at nodes of the fertile axis lack bracts. Each stalk is undivided, curves adaxially in the distal part, and terminates in a single spiny and elliptical sporangium. Stalks may occur with a fertile lateral axis at the same node of the fertile main axis. This plant may represent the most primitive type in the Sphenopsida and, further, may prove the greater reproductive diversity of the Sphenophyllales. Detailed anatomical study shows a three-ribbed primary xylem of exarch maturation in protostele and a secondary xylem lacking parenchyma cells. Anatomical comparison with other members indicates that the Sphenophyllales are consistent in primary-xylem architecture and are moderately variable in secondary-xylem structure. [ABSTRACT FROM AUTHOR]