88 results on '"Ashwani Pareek"'
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2. Govindjee’s 90th birthday: a life dedicated to photosynthesis
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Alexandrina Stirbet, Dmitry Shevela, Ashwani Pareek, Sushma Naithani, Lars Olof Björn, Julian J. Eaton-Rye, and Arthur Nonomura
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Physiology ,Genetics ,Cell Biology ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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3. Physiological and molecular signatures reveal differential response of rice genotypes to drought and drought combination with heat and salinity stress
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Chhaya Yadav, Rajeev Nayan Bahuguna, Om Parkash Dhankher, Sneh L. Singla-Pareek, and Ashwani Pareek
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Physiology ,Plant Science ,Molecular Biology ,Research Article - Abstract
Rice is the staple food for more than 3.5 billion people worldwide. The sensitivity of rice to heat, drought, and salinity is well documented. However, rice response to combinations of these stresses is not well understood. A contrasting set of rice genotypes for heat (N22, Gharib), drought (Moroberekan, Pusa 1121) and salinity (Pokkali, IR64) were selected to characterize their response under drought, and combination of drought with heat and salinity at the sensitive seedling stage. Sensitive genotypes (IR64, Pusa 1121, Gharib) recorded higher reactive oxygen species accumulation (20–40%), membrane damage (8–65%) and reduction in photosynthetic efficiency (10–23%) across the stress and stress combinations as compared to stress tolerant checks. On the contrary, N22 and Pokkali performed best under drought + heat, and drought + salinity combination, respectively. Moreover, gene expression pattern revealed the highest expression of catalase (CAT), ascorbate peroxidase (APX) and GATA28a in N22 under heat + drought, whereas the highest expression of CAT, APX, superoxide dismutase (SOD), DEHYDRIN, GATA28a and GATA28b in Pokkali under drought + salinity. Interestingly, the phenotypic variation and expression level of genes highlighted the role of different set of physiological traits and genes under drought and drought combination with heat and salinity stress. This study reveals that rice response to stress combinations was unique with rapid readjustment at physiological and molecular levels. Moreover, phenotypic changes under stress combinations showed substantial adaptive plasticity in rice, which warrant further investigations at molecular level. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12298-022-01162-y.
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- 2022
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4. Rewilding staple crops for the lost halophytism: Toward sustainability and profitability of agricultural production systems
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Nishtha Rawat, Silas Wungrampha, Sneh L. Singla-Pareek, Min Yu, Sergey Shabala, and Ashwani Pareek
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Crops, Agricultural ,Plant Breeding ,Agriculture ,Salt-Tolerant Plants ,Salt Tolerance ,Plant Science ,Molecular Biology ,Food Supply - Abstract
Abiotic stress tolerance has been weakened during the domestication of all major staple crops. Soil salinity is a major environmental constraint that impacts over half of the world population; however, given the increasing reliance on irrigation and the lack of available freshwater, agriculture in the 21st century will increasingly become saline. Therefore, global food security is critically dependent on the ability of plant breeders to create high-yielding staple crop varieties that will incorporate salinity tolerance traits and account for future climate scenarios. Previously, we have argued that the current agricultural practices and reliance on crops that exclude salt from uptake is counterproductive and environmentally unsustainable, and thus called for a need for a major shift in a breeding paradigm to incorporate some halophytic traits that were present in wild relatives but were lost in modern crops during domestication. In this review, we provide a comprehensive physiological and molecular analysis of the key traits conferring crop halophytism, such as vacuolar Na
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- 2022
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5. Carbon dioxide responsiveness mitigates rice yield loss under high night temperature
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Rajeev N. Bahuguna, Madan Pal, S. V. Krishna Jagadish, Ashwani Pareek, C. Viswanathan, and Ashish K. Chaturvedi
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Crops, Agricultural ,Hot Temperature ,Genotype ,AcademicSubjects/SCI01280 ,Physiology ,India ,Plant Science ,Biology ,Photosynthesis ,chemistry.chemical_compound ,Genetics ,Ecophysiology and Sustainability ,Research Articles ,AcademicSubjects/SCI01270 ,Oryza sativa ,AcademicSubjects/SCI02288 ,AcademicSubjects/SCI02287 ,AcademicSubjects/SCI02286 ,Genetic Variation ,food and beverages ,Sowing ,Oryza ,Carbon Dioxide ,Horticulture ,chemistry ,Yield (chemistry) ,Carbon dioxide ,Grain yield - Abstract
Increasing night-time temperatures are a major threat to sustaining global rice (Oryza sativa L.) production. A simultaneous increase in [CO2] will lead to an inevitable interaction between elevated [CO2] (e[CO2]) and high night temperature (HNT) under current and future climates. Here, we conducted field experiments to identify [CO2] responsiveness from a diverse indica panel comprising 194 genotypes under different planting geometries in 2016. Twenty-three different genotypes were tested under different planting geometries and e[CO2] using a free-air [CO2] enrichment facility in 2017. The most promising genotypes and positive and negative controls were tested under HNT and e[CO2] + HNT in 2018. [CO2] responsiveness, measured as a composite response index on different yield components, grain yield, and photosynthesis, revealed a strong relationship (R2 = 0.71) between low planting density and e[CO2]. The most promising genotypes revealed significantly lower (P, Active selection for carbon dioxide responsiveness in rice and other C3 crops can mitigate yield loss induced by high night temperature.
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- 2021
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6. Rice mutants with tolerance to multiple abiotic stresses show high constitutive abundance of stress-related transcripts and proteins
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Sneh L. Singla Pareek, Ashwani Pareek, Ray Singh Rathore, Priyanka Das, Ramsong Chantre Nongpiur, Sheenu Abbat, Rajeev N. Bahuguna, and Fatma Sarsu
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Stress (mechanics) ,Abiotic component ,Genetics ,Abundance (ecology) ,Mutant ,food and beverages ,Plant Science ,Biology ,Agronomy and Crop Science - Abstract
Mutation breeding has a long track record in the development of crop cultivars with improved tolerance to abiotic stresses such as heat, salinity and drought. Oryza sativa L. cv IR64 is a very popular high yielding rice, but susceptible to major abiotic stresses, such as low and high temperatures, salinity and drought. We subjected IR64 to gamma irradiation and generated a mutant population (M3) with ~2,000 families. These were screened at the seedling stage for tolerance to high-temperature stress using hydroponics and controlled-environment chambers, resulting in the identification of three mutant lines showing a robust seedling phenotype. Under heat stress, higher CO2 assimilation (10-30%), higher spikelet fertility (40-45%) and higher antioxidant activity (15-20% catalase activity) confirmed superiority of the selected mutant lines over wild type plants at seedling and flowering stages. Upon exposure to salinity and drought stress, the three selected lines also exhibited better tolerance than wild type in terms of higher CO2 assimilation, stomatal conductance, transpiration and chlorophyll fluorescence. Transcript and protein abundance analyses confirmed higher constitutive levels of heat shock proteins and antioxidant enzymes in the mutant lines relative to wild type. Tolerance to multiple abiotic stresses was reflected in higher (25-30%) grain yield than wild type. It is anticipated that the mutant lines identified will be useful for developing new improved cultivars for dry and saline areas and may be exploited to dissect the molecular basis of multiple stress tolerance in crop plants
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- 2021
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7. Two-component signaling system in plants: interaction network and specificity in response to stress and hormones
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Ashwani Pareek, Sneh L. Singla-Pareek, and Deepti Singh
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0106 biological sciences ,0301 basic medicine ,Plant growth ,Plant Science ,Biology ,01 natural sciences ,03 medical and health sciences ,Plant Growth Regulators ,Stress, Physiological ,Interaction network ,Transcription factor ,Plant Proteins ,Abiotic component ,fungi ,food and beverages ,General Medicine ,Plants ,Two-component regulatory system ,Signaling system ,Cell biology ,030104 developmental biology ,Signal transduction ,Agronomy and Crop Science ,Signal Transduction ,Transcription Factors ,010606 plant biology & botany ,Hormone - Abstract
Plants are exposed to various environmental challenges that can hamper their growth, development, and productivity. Being sedentary, plants cannot escape from these unfavorable environmental conditions and have evolved various signaling cascades to endure them. The two-component signaling (TCS) system is one such essential signaling circuitry present in plants regulating responses against multiple abiotic and biotic stresses. It is among the most ancient and evolutionary conserved signaling pathways in plants, which include membrane-bound histidine kinases (HKs), cytoplasmic histidine phosphotransfer proteins (Hpts), and nuclear or cytoplasmic response regulators (RRs). At the same time, TCS also involved in many signaling circuitries operative in plants in response to diverse hormones. These plant growth hormones play a significant role in diverse physiological and developmental processes, and their contribution to plant stress responses is coming up in a big way. Therefore, it is intriguing to know how TCS and various plant growth regulators, along with the key transcription factors, directly or indirectly control the responses of plants towards diverse stresses. The present review attempts to explore this relationship, hoping that this knowledge will contribute towards developing crop plants with enhanced climate resilience.
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- 2021
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8. Correction to: Govindjee’s 90th birthday: a life dedicated to photosynthesis
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Alexandrina Stirbet, Dmitry Shevela, Ashwani Pareek, Sushma Naithani, Lars Olof Björn, Julian J. Eaton-Rye, and Arthur Nonomura
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Physiology ,Genetics ,Cell Biology ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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9. Raising crops for dry and saline lands: Challenges and the way forward
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Anil Kumar Singh, Kapuganti Jagadis Gupta, Sneh L. Singla‐Pareek, Christine H. Foyer, and Ashwani Pareek
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Crops, Agricultural ,Soil ,Physiology ,Genetics ,Agriculture ,Salt-Tolerant Plants ,Cell Biology ,Plant Science ,General Medicine - Published
- 2022
10. Glyoxalase <scp>III</scp> enhances salinity tolerance through reactive oxygen species scavenging and reduced glycation
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Ajit Ghosh, Ananda Mustafiz, Ashwani Pareek, Sudhir K. Sopory, and Sneh L. Singla‐Pareek
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Salinity ,Physiology ,Lactoylglutathione Lyase ,Salt Tolerance ,Cell Biology ,Plant Science ,General Medicine ,Plants, Genetically Modified ,Pyruvaldehyde ,Aldehyde Oxidoreductases ,Antioxidants ,Gene Expression Regulation, Plant ,Stress, Physiological ,Tobacco ,Escherichia coli ,Genetics ,Reactive Oxygen Species ,NADP ,Plant Proteins - Abstract
Methylglyoxal (MG) is a metabolically generated highly cytotoxic compound that accumulates in all living organisms, from Escherichia coli to humans, under stress conditions. To detoxify MG, nature has evolved reduced glutathione (GSH)-dependent glyoxalase and NADPH-dependent aldo-keto reductase systems. But both GSH and NADPH have been reported to be limiting in plants under stress conditions, and thus detoxification might not be performed efficiently. Recently, glyoxalase III (GLY III)-like enzyme activity has been reported from various species, which can detoxify MG without any cofactor. In the present study, we have tested whether an E. coli gene, hchA, encoding a functional GLY III, could provide abiotic stress tolerance to living systems. Overexpression of this gene showed improved tolerance in E. coli and Saccharomyces cerevisiae cells against salinity, dicarbonyl, and oxidative stresses. Ectopic expression of the E. coli GLY III gene (EcGLY-III) in transgenic tobacco plants confers tolerance against salinity at both seedling and reproductive stages as indicated by their height, weight, membrane stability index, and total yield potential. Transgenic plants showed significantly increased glyoxalase and antioxidant enzyme activity that resisted the accumulation of excess MG and reactive oxygen species (ROS) during stress. Moreover, transgenic plants showed more anti-glycation activity to inhibit the formation of advanced glycation end product (AGE) that might prevent transgenic plants from stress-induced senescence. Taken together, all these observations indicate that overexpression of EcGLYIII confers salinity stress tolerance in plants and should be explored further for the generation of stress-tolerant plants.
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- 2022
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11. Ion transporters and their regulatory signal transduction mechanisms for salinity tolerance in plants
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Shubham Joshi, Jhilmil Nath, Anil Kumar Singh, Ashwani Pareek, and Rohit Joshi
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Ions ,Salinity ,Stress, Physiological ,Physiology ,Genetics ,Ion Pumps ,Salt Tolerance ,Cell Biology ,Plant Science ,General Medicine ,Plants ,Signal Transduction - Abstract
Soil salinity is one of the most serious threats to plant growth and productivity. Due to global climate change, burgeoning population and shrinking arable land, there is an urgent need to develop crops with minimum reduction in yield when cultivated in salt-affected areas. Salinity stress imposes osmotic stress as well as ion toxicity, which impairs major plant processes such as photosynthesis, cellular metabolism, and plant nutrition. One of the major effects of salinity stress in plants includes the disturbance of ion homeostasis in various tissues. In the present study, we aimed to review the regulation of uptake, transport, storage, efflux, influx, and accumulation of various ions in plants under salinity stress. We have summarized major research advancements towards understanding the ion homeostasis at both cellular and whole-plant level under salinity stress. We have also discussed various factors regulating the function of ion transporters and channels in maintaining ion homeostasis and ionic interactions under salt stress, including plant antioxidative defense, osmo-protection, and osmoregulation. We further elaborated on stress perception at extracellular and intracellular levels, which triggers downstream intracellular-signaling cascade, including secondary messenger molecules generation. Various signaling and signal transduction mechanisms under salinity stress and their role in improving ion homeostasis in plants are also discussed. Taken together, the present review focuses on recent advancements in understanding the regulation and function of different ion channels and transporters under salt stress, which may pave the way for crop improvement.
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- 2022
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12. DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64
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Manjari Mishra, Ray Singh Rathore, Rohit Joshi, Ashwani Pareek, and Sneh Lata Singla‐Pareek
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Physiology ,Gene Expression Regulation, Plant ,Quantitative Trait Loci ,Genetics ,Oryza ,Cell Biology ,Plant Science ,General Medicine ,Flowers ,Plant Proteins - Abstract
Rice yield and heading date are the two discrete traits controlled by quantitative trait loci (QTLs). Both traits are influenced by the genetic make-up of the plant as well as the environmental factors where it thrives. Drought and salinity adversely affect crop productivity in many parts of the world. Tolerance to these stresses is multigenic and complex in nature. In this study, we have characterized a QTL, DTH8 (days to heading) from Oryza sativa L. cv IR64 that encodes a putative HAP3/NF-YB/CBF subunit of CCAAT-box binding protein (HAP complex). We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64. DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage. The presence of DTH8 binding elements (CCAAT) in the promoter regions of all of these genes, predicted by in silico analysis of the promoter region, indicates the regulation of their expression by DTH8. In addition, DTH8 overexpressing transgenic lines showed favorable physiological parameters causing less yield penalty under stress than the WT plants. Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions.
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- 2022
13. Expression dynamics of glyoxalase genes under high temperature stress in plants
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Charanpreet Kaur, Bidisha Bhowal, Ashwani Pareek, Sneh L. Singla-Pareek, Sampurna Garai, and Sudhir K. Sopory
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chemistry.chemical_classification ,Reactive oxygen species ,Physiology ,Methylglyoxal ,food and beverages ,Plant physiology ,Cell Biology ,Plant Science ,Biology ,Acclimatization ,Cell biology ,Transcriptome ,Salinity ,chemistry.chemical_compound ,chemistry ,Detoxification ,Genetics ,Gene ,Ecology, Evolution, Behavior and Systematics - Abstract
Heat stress, owing to the recent climate change events, has emerged as one of the major environmental factors posing a grave threat to plant survival and crop productivity. Oxidative damage due to increased generation of reactive oxygen and dicarbonyl species in response to heat, is one of the serious consequences of high temperature stress. Methylglyoxal (MG), is one such cytotoxic dicarbonyl metabolite whose levels are known to increase in response to high temperature and various other stress conditions in plants. In fact, it is considered as a general consequence of stress in plants. The synergistic co-activation of reactive oxygen species scavenging and the MG detoxification pathways thus, plays a key role in regulation of stress responses for plant acclimation. Glyoxalase enzymes are the major MG detoxifying proteins in the living organisms. In plants, glyoxalases are encoded as multigenic families, known to be involved in plant growth and development, although, chiefly associated with multiple stress inducible behaviour and tolerance. While their role in salinity, drought and heavy metal stresses has been well-studied, their significance under high temperature stress has received limited coverage. In this review, we emphasize on the dynamic role of glyoxalases under high temperature stress for conferring thermotolerance. Through analysis of heat responsive transcriptomes and proteomes of various plants, we provide evidence for a hitherto, unexplored role of glyoxalases as a mechanism of mounting thermotolerance responses. We also, show that ‘priming’ induced stress/cross stress tolerance in plants involves the activation of glyoxalase pathway.
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- 2020
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14. The chloride channels: Silently serving the plants
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Ashwani Pareek, Surabhi Tomar, Ashish Subba, and Sneh L. Singla-Pareek
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0106 biological sciences ,0301 basic medicine ,Physiology ,Plant Science ,Vacuole ,Biology ,01 natural sciences ,03 medical and health sciences ,Chloride Channels ,Genetics ,Gene ,Cloning ,Protein function ,Structural organization ,Biological Transport ,Salt Tolerance ,Cell Biology ,General Medicine ,Cell biology ,030104 developmental biology ,Vacuoles ,Chloride channel ,Normal growth ,Protons ,Function (biology) ,010606 plant biology & botany - Abstract
Chloride channels (CLCs), member of anion transporting proteins, are present ubiquitously in all life forms. Diverging from its name, the CLC family includes both channel and exchanger (proton-coupled) proteins; nevertheless, they share conserved structural organization. They are engaged in diverse indispensable functions such as acid and fluoride tolerance in prokaryotes to muscle stabilization, transepithelial transport, and neuronal development in mammals. Mutations in genes encoding CLCs lead to several physiological disorders in different organisms, including severe diseases in humans. Even in plants, loss of CLC protein function severely impairs various cellular processes critical for normal growth and development. These proteins sequester Cl- into the vacuole, thus, making them an attractive target for improving salinity tolerance in plants caused by high abundance of salts, primarily NaCl. Besides, some CLCs are involved in NO3 - transport and storage function in plants, thus, influencing their nitrogen use efficiency. However, despite their high significance, not many studies have been carried out in plants. Here, we have attempted to concisely highlight the basic structure of CLC proteins and critical residues essential for their function and classification. We also present the diverse functions of CLCs in plants from their first cloning back in 1996 to the knowledge acquired as of now. We stress the need for carrying out more in-depth studies on CLCs in plants, for they may have future applications towards crop improvement.
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- 2020
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15. Celebrating the contributions of Govindjee after his retirement: 1999–2020
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Suleyman I. Allakhverdiev, Lars Olof Björn, Győző Garab, Julian J. Eaton-Rye, Arthur Nonomura, Dmitry Shevela, Alexandrina Stirbet, Ashwani Pareek, Dušan Lazár, and Xin-Guang Zhu
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0106 biological sciences ,Philosophy ,Botany ,Art history ,Plant Science ,Plant biology ,010603 evolutionary biology ,01 natural sciences ,Chlorophyll fluorescence ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Govindjee, Professor Emeritus of Biochemistry, Biophysics and Plant Biology at the University of Illinois at Urbana-Champaign since 1999, is renowned for his pioneering work in the light reactions of photosynthesis and important accomplishments as educator, editor, historian and advocate of photosynthesis. In his honour, we review his contributions over the last twenty years, which were often achieved in collaboration with scientists working in laboratories around the world. We start with a short presentation about Govindjee’s career and continue with a section highlighting his passion and dedication to teach the younger generations of students and researchers about photosynthesis. His research work is grouped under different areas, including primary photochemistry; the relationship of chlorophyll a fluorescence to photosynthesis; short time-scale regulation processes of photosynthesis; studies toward improving photosynthesis and biomass yields; and, mathematical modelling of photosynthesis and artificial photosynthesis. He is best known for the discovery of the key role of bicarbonate on the electron acceptor side of Photosystem II. We also present his active involvement in the recognition of scientists at conferences and beyond, as well as of those who are no longer with us. He is committed to keeping alive the pioneers and discoverers in the field of photosynthesis in the collective memory of those in the field.
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- 2020
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16. How do rice seedlings of landrace Pokkali survive in saline fields after transplantation? Physiology, biochemistry, and photosynthesis
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Silas Wungrampha, Ashwani Pareek, Manjari Mishra, Sneh L. Singla-Pareek, and Gautam Kumar
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0106 biological sciences ,0301 basic medicine ,Salinity ,Soil salinity ,Plant Science ,Sodium Chloride ,Biology ,Photosystem I ,Photosynthesis ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,Stress, Physiological ,Oryza sativa ,food and beverages ,Oryza ,Salt Tolerance ,Cell Biology ,General Medicine ,Saline water ,Transplantation ,Horticulture ,030104 developmental biology ,Ion homeostasis ,Seedlings ,010606 plant biology & botany - Abstract
Rice, one of the most important staple food crops in the world, is highly sensitive to soil salinity at the seedling stage. The ultimate yield of this crop is a function of the number of seedlings surviving after transplantation in saline water. Oryza sativa cv. IR64 is a high-yielding salinity-sensitive variety, while Pokkali is a landrace traditionally cultivated by the local farmers in the coastal regions in India. However, the machinery responsible for the seedling-stage tolerance in Pokkali is not understood. To bridge this gap, we subjected young seedlings of these contrasting genotypes to salinity and performed detailed investigations about their growth parameters, ion homeostasis, biochemical composition, and photosynthetic parameters after every 24 h of salinity for three days. Taken together, all the physiological and biochemical indicators, such as proline accumulation, K+/Na+ ratio, lipid peroxidation, and electrolyte leakage, clearly revealed significant differences between IR64 and Pokkali under salinity, establishing their contrasting nature at this stage. In response to salinity, the Fv/Fm ratio (maximum quantum efficiency of Photosystem II as inferred from Chl a fluorescence) and the energy conserved for the electron transport after the reduction of QA (the primary electron acceptor of PSII), to QA−, and reduction of the end electron acceptor molecules towards the PSI (Photosystem I) electron acceptor side was higher in Pokkali than IR64 plants. These observations reflect a direct contribution of photosynthesis towards seedling-stage salinity tolerance in rice. These findings will help to breed high-yielding crops for salinity prone agricultural lands.
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- 2020
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17. Reassessing plant glyoxalases: large family and expanding functions
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Brijesh Kumar, Ashwani Pareek, Charanpreet Kaur, Sudhir K. Sopory, and Sneh L. Singla-Pareek
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chemistry.chemical_classification ,Future studies ,Physiology ,Methylglyoxal ,Lactoylglutathione Lyase ,Plant Science ,Metabolism ,Plants ,Biology ,Pyruvaldehyde ,Cell biology ,Fight-or-flight response ,chemistry.chemical_compound ,Enzyme ,chemistry ,Detoxification - Abstract
Methylglyoxal (MG), a reactive carbonyl compound, is generated during metabolism in living systems. However, under stress, its levels increase rapidly leading to cellular toxicity. Although the generation of MG is spontaneous in a cell, its detoxification is essentially catalyzed by the glyoxalase enzymes. In plants, modulation of MG content via glyoxalases influences diverse physiological functions ranging from regulating growth and development to conferring stress tolerance. Interestingly, there has been a preferred expansion in the number of isoforms of these enzymes in plants, giving them high plasticity in their actions for accomplishing diverse roles. Future studies need to focus on unraveling the interplay of these multiple isoforms of glyoxalases possibly contributing towards the unique adaptability of plants to diverse environments.
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- 2020
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18. Seedling‐stage salinity tolerance in rice: Decoding the role of transcription factors
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Shalini Tiwari, Kamlesh Kant Nutan, Rupesh Deshmukh, Fatma Sarsu, Kapuganti Jagadis Gupta, Anil K. Singh, Sneh L. Singla‐Pareek, and Ashwani Pareek
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Salinity ,Seedlings ,Physiology ,Quantitative Trait Loci ,Genetics ,Oryza ,Salt Tolerance ,Cell Biology ,Plant Science ,General Medicine ,Transcription Factors - Abstract
Rice is an important staple food crop that feeds over half of the human population, particularly in developing countries. Increasing salinity is a major challenge for continuing rice production. Though rice is affected by salinity at all the developmental stages, it is most sensitive at the early seedling stage. The yield thus depends on how many seedlings can withstand saline water at the stage of transplantation, especially in coastal farms. The rapid development of "omics" approaches has assisted researchers in identifying biological molecules that are responsive to salt stress. Several salinity-responsive quantitative trait loci (QTL) contributing to salinity tolerance have been identified and validated, making it essential to narrow down the search for the key genes within QTLs. Owing to the impressive progress of molecular tools, it is now clear that the response of plants toward salinity is highly complex, involving multiple genes, with a specific role assigned to the repertoire of transcription factors (TF). Targeting the TFs for improving salinity tolerance can have an inbuilt advantage of influencing multiple downstream genes, which in turn can contribute toward tolerance to multiple stresses. This is the first comparative study for TF-driven salinity tolerance in contrasting rice cultivars at the seedling stage that shows how tolerant genotypes behave differently than sensitive ones in terms of stress tolerance. Understanding the complexity of salt-responsive TF networks at the seedling stage will be helpful to alleviate crop resilience and prevent crop damage at an early growth stage in rice.
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- 2022
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19. Shaping the root system architecture in plants for adaptation to drought stress
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Alok Ranjan, Ragini Sinha, Sneh L. Singla‐Pareek, Ashwani Pareek, and Anil Kumar Singh
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Plant Growth Regulators ,Physiology ,Genetics ,Water ,Cell Biology ,Plant Science ,General Medicine ,Plant Roots ,Droughts ,Transcription Factors - Abstract
Root system architecture plays an important role in plant adaptation to drought stress. The root system architecture (RSA) consists of several structural features, which includes number and length of main and lateral roots along with the density and length of root hairs. These features exhibit plasticity under water-limited environments and could be critical to developing crops with efficient root systems for adaptation under drought. Recent advances in the omics approaches have significantly improved our understanding of the regulatory mechanisms of RSA remodeling under drought and the identification of genes and other regulatory elements. Plant response to drought stress at physiological, morphological, biochemical, and molecular levels in root cells is regulated by various phytohormones and their crosstalk. Stress-induced reactive oxygen species play a significant role in regulating root growth and development under drought stress. Several transcription factors responsible for the regulation of RSA under drought have proven to be beneficial for developing drought tolerant crops. Molecular breeding programs for developing drought-tolerant crops have been greatly benefitted by the availability of quantitative trait loci (QTLs) associated with the RSA regulation. In the present review, we have discussed the role of various QTLs, signaling components, transcription factors, microRNAs and crosstalk among various phytohormones in shaping RSA and present future research directions to better understand various factors involved in RSA remodeling for adaptation to drought stress. We believe that the information provided herein may be helpful in devising strategies to develop crops with better RSA for efficient uptake and utilization of water and nutrients under drought conditions.
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- 2022
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20. <scp>OsCyp2‐P</scp> , an auxin‐responsive cyclophilin, regulates Ca 2+ calmodulin interaction for an ion‐mediated stress response in rice
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Suchismita Roy, Manjari Mishra, Gundeep Kaur, Supreet Singh, Nishtha Rawat, Prabhjeet Singh, Sneh L. Singla‐Pareek, and Ashwani Pareek
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Physiology ,Genetics ,Cell Biology ,Plant Science ,General Medicine - Published
- 2022
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21. Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice
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Gautam Kumar, Sahana Basu, Sneh L. Singla‐Pareek, and Ashwani Pareek
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Salinity ,Physiology ,Gene Expression Regulation, Plant ,Stress, Physiological ,Genetics ,Oryza ,Cell Biology ,Plant Science ,General Medicine ,Salt Tolerance ,Plants, Genetically Modified ,Droughts ,Plant Proteins - Abstract
Abiotic stresses are emerging as a potential threat to sustainable agriculture worldwide. Soil salinity and drought will be the major limiting factors for rice productivity in years to come. The Salt Overly Sensitive (SOS) pathway plays a key role in salinity tolerance by maintaining the cellular ion homeostasis, with SOS2, a S/T kinase, being a vital component. The present study investigated the role of the OsSOS2, a SOS2 homolog from rice, in improving salinity and drought tolerance. Transgenic plants with either overexpression (OE) or knockdown (KD) of OsSOS2 were raised in one of the high-yielding cultivars of rice-IR64. Using a combined approach based on physiological, biochemical, anatomical, microscopic, molecular, and agronomic assessment, the evidence presented in this study advocates the role of OsSOS2 in improving salinity and drought tolerance in rice. The OE plants were found to have favorable ion and redox homeostasis when grown in the presence of salinity, while the KD plants showed the reverse pattern. Several key stress-responsive genes were found to work in an orchestrated manner to contribute to this phenotype. Notably, the OE plants showed tolerance to stress at both the seedling and the reproductive stages, addressing the two most sensitive stages of the plant. Keeping in mind the importance of developing crops plants with tolerance to multiple stresses, the present study established the potential of OsSOS2 for biotechnological applications to improve salinity and drought stress tolerance in diverse cultivars of rice.
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- 2022
22. Genetic Basis of Carnivorous Leaf Development
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Arpita Agrawal, Ashwani Pareek, and Jeremy Dkhar
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Nepenthes ,Sarracenia ,Mini Review ,Utricularia ,Plant culture ,Plant Science ,carnivorous plants ,leaf development ,SB1-1110 - Abstract
Plant carnivory is often manifested as dramatic changes in the structure and morphology of the leaf. These changes appear to begin early in leaf development. For example, the development of the Sarracenia purpurea leaf primordium is associated with the formation of an adaxial ridge, whose growth along with that of the leaf margin resulted in a hollow structure that later developed into a pitcher. In Nepenthes khasiana, pitcher formation occurs during the initial stages of leaf development, although this has not been shown at the primordial stage. The formation of the Utricularia gibba trap resulted from the growth of the dome-shaped primordium in both the longitudinal and transverse directions. Recent research has begun to unfold the genetic basis of the development of the carnivorous leaf. We review these findings and discuss them in relation to the flat-shaped leaves of the model plant Arabidopsis.
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- 2022
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23. Govindjee’s 90th birthday – Congratulations from friends and colleagues
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Sushma Naithani, Alexandrina Stirbet, Dmitry Shevela, Ashwani Pareek, Lars Olof Björn, Julian J. Eaton-Rye, and Arthur Nonomura
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Bicarbonate ,Oxygenic photosynthesis ,Emerson-Govindjees’ enhancement effect ,Botany ,Genetics ,Z-Scheme ,Botanik ,Cell Biology ,Plant Science ,Chlorophyll fluorescence ,Biochemistry ,Developmental Biology - Abstract
On the occasion of the 90th birthday of Govindjee, Professor Emeritus of Plant Biology, Biochemistry, and Biophysics, the University of Illinois at Urbana-Champaign (UIUC), over 100 celebrants have sent felicitations and messages to thank him for mentoring, nurturing, and building the community of photosynthesis researchers belonging to four generations; and in making the scientific knowledge accessible to students and young researchers via his monumental writings and editorial contributions. Govindjee joined UIUC in September of 1956 to study as a graduate student in the laboratory of Robert Emerson. In 1961, he joined UIUC as an Assistant Professor and retired as a full professor in 1999. He is well-known for pioneering work in oxygenic photosynthesis, leading to the current Z-scheme, and for his breakthrough advances concerning light harvesting, primary charge separation, the role of bicarbonate on the two-electron gate of photosystem II, water oxidation, nonphotochemical quenching, and the use of biophysical techniques, such as prompt fluorescence, delayed fluorescence, thermoluminescence, and nuclear magnetic resonance. Today, despite his retirement, Govindjee continues to explore several important questions in the field of photosynthesis and documents the history of science. This tribute, in turn, attempts to capture scientific collaborations, as well as scholarly and personal contributions made by Govindjee to the lives of hundreds of scholars and students worldwide.
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- 2022
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24. Enhancing trehalose biosynthesis improves yield potential in marker-free transgenic rice under drought, saline, and sodic conditions
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Khirod Kumar Sahoo, R.K. Gautam, Ashwani Pareek, S. L. Krishnamurthy, Sudhir K. Sopory, Rohit Joshi, Preeti Pundir, Anil Kumar Singh, Khalid Anwar, and Sneh L. Singla-Pareek
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0106 biological sciences ,0301 basic medicine ,Stomatal conductance ,Salinity ,Physiology ,metabolite ,Plant Science ,Genetically modified crops ,Photosynthetic efficiency ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Soil ,sodicity ,Overproduction ,Water content ,transgenic ,Drought ,Chemistry ,rice ,fungi ,food and beverages ,Trehalose ,Oryza ,Hydrogen-Ion Concentration ,yield ,Plants, Genetically Modified ,Genetically modified rice ,Research Papers ,Droughts ,Horticulture ,030104 developmental biology ,010606 plant biology & botany ,marker-free - Abstract
Marker-free transgenic lines of rice are developed with enhanced trehalose accumulation that is associated with improved grain yield under salinity, sodicity, and drought stresses., Edaphic factors such as salinity, sodicity, and drought adversely affect crop productivity, either alone or in combination. Despite soil sodicity being reported as an increasing problem worldwide, limited efforts have been made to address this issue. In the present study, we aimed to generate rice with tolerance to sodicity in conjunction with tolerance to salinity and drought. Using a fusion gene from E. coli coding for trehalose-6-phosphate synthase/phosphatase (TPSP) under the control of an ABA-inducible promoter, we generated marker-free, high-yielding transgenic rice (in the IR64 background) that can tolerate high pH (~9.9), high EC (~10.0 dS m–1), and severe drought (30–35% soil moisture content). The transgenic plants retained higher relative water content (RWC), chlorophyll content, K+/Na+ ratio, stomatal conductance, and photosynthetic efficiency compared to the wild-type under these stresses. Positive correlations between trehalose overproduction and high-yield parameters were observed under drought, saline, and sodic conditions. Metabolic profiling using GC-MS indicated that overproduction of trehalose in leaves differently modulated other metabolic switches, leading to significant changes in the levels of sugars, amino acids, and organic acids in transgenic plants under control and stress conditions. Our findings reveal a novel potential technological solution to tackle multiple stresses under changing climatic conditions.
- Published
- 2019
25. Integrating the dynamics of yield traits in rice in response to environmental changes
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Ray Singh Rathore, Ashwani Pareek, Amit K. Tripathi, Sneh L. Singla-Pareek, Manjari Mishra, and Kamlesh Kant Nutan
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0106 biological sciences ,0301 basic medicine ,Abiotic component ,Food security ,Physiology ,Climate Change ,Crop yield ,Yield (finance) ,Global warming ,food and beverages ,Agriculture ,Oryza ,Plant Science ,Genetically modified crops ,Agricultural engineering ,Biology ,Adaptation, Physiological ,01 natural sciences ,Crop ,Salinity ,03 medical and health sciences ,Phenotype ,030104 developmental biology ,010606 plant biology & botany - Abstract
Reductions in crop yields as a consequence of global climate change threaten worldwide food security. It is therefore imperative to develop high-yielding crop plants that show sustainable production under stress conditions. In order to achieve this aim through breeding or genetic engineering, it is crucial to have a complete and comprehensive understanding of the molecular basis of plant architecture and the regulation of its sub-components that contribute to yield under stress. Rice is one of the most widely consumed crops and is adversely affected by abiotic stresses such as drought and salinity. Using it as a model system, in this review we present a summary of our current knowledge of the physiological and molecular mechanisms that determine yield traits in rice under optimal growth conditions and under conditions of environmental stress. Based on physiological functioning, we also consider the best possible combination of genes that may improve grain yield under optimal as well as environmentally stressed conditions. The principles that we present here for rice will also be useful for similar studies in other grain crops.
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- 2019
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26. A unique bZIP transcription factor imparting multiple stress tolerance in Rice
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Kamlesh Kant Nutan, Sneh L. Singla-Pareek, Priyanka Das, Ashwani Pareek, and Nita Lakra
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0106 biological sciences ,0301 basic medicine ,Salinity ,Drought tolerance ,Soil Science ,Oryza sativa ,Plant Science ,Genetically modified crops ,lcsh:Plant culture ,01 natural sciences ,Superoxide dismutase ,03 medical and health sciences ,chemistry.chemical_compound ,lcsh:SB1-1110 ,Photosynthesis ,biology ,bZIP transcription factor ,Abiotic stress ,Callose ,food and beverages ,Heat ,Genetically modified rice ,Cell biology ,030104 developmental biology ,chemistry ,ABA ,biology.protein ,Original Article ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Background Rice productivity is adversely affected by environmental stresses. Transcription factors (TFs), as the regulators of gene expression, are the key players contributing to stress tolerance and crop yield. Histone gene binding protein-1b (OsHBP1b) is a TF localized within the Saltol QTL in rice. Recently, we have reported the characterization of OsHBP1b in relation to salinity and drought tolerance in a model system tobacco. In the present study, we over-express the full-length gene encoding OsHBP1b in the homologous system (rice) to assess its contribution towards multiple stress tolerance and grain yield. Results We provide evidence to show that transgenic rice plants over-expressing OsHBP1b exhibit better survival and favourable osmotic parameters under salinity stress than the wild type counterparts. These transgenic plants restricted reactive oxygen species accumulation by exhibiting high antioxidant enzyme activity (ascorbate peroxidase and superoxide dismutase), under salinity conditions. Additionally, these transgenic plants maintained the chlorophyll concentration, organellar structure, photosynthesis and expression of photosynthesis and stress-related genes even when subjected to salinity stress. Experiments conducted for other abiotic stresses such as drought and high temperature revealed improved tolerance in these transgenic plants with better root and shoot growth, better photosynthetic parameters, and enhanced antioxidant enzyme activity, in comparison with WT. Further, the roots of transgenic lines showed large cortical cells and accumulated a good amount of callose, unlike the WT roots, thus enabling them to penetrate hard soil and prevent the entry of harmful ions in the cell. Conclusion Collectively, our results show that rice HBP1b gene contributes to multiple abiotic stress tolerance through several molecular and physiological pathways and hence, may serve as an important gene for providing multiple stress tolerance and improving crop yield in rice. Electronic supplementary material The online version of this article (10.1186/s12284-019-0316-8) contains supplementary material, which is available to authorized users.
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- 2019
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27. CO2 uptake and chlorophyll a fluorescence of Suaeda fruticosa grown under diurnal rhythm and after transfer to continuous dark
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Rohit Joshi, Ray Singh Rathore, Govindjee, Ashwani Pareek, Sneh L. Singla-Pareek, and Silas Wungrampha
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0106 biological sciences ,0301 basic medicine ,Chlorophyll a ,Photoinhibition ,Photosystem II ,biology ,food and beverages ,macromolecular substances ,Cell Biology ,Plant Science ,General Medicine ,Photosystem I ,biology.organism_classification ,Photosynthesis ,01 natural sciences ,Biochemistry ,Gas analyzer ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Suaeda fruticosa ,Chlorophyll ,Botany ,010606 plant biology & botany - Abstract
Although only 2–4% of absorbed light is emitted as chlorophyll (Chl) a fluorescence, its measurement provides valuable information on photosynthesis of the plant, particularly of Photosystem II (PSII) and Photosystem I (PSI). In this paper, we have examined photosynthetic parameters of Suaeda fruticosa L. (family: Amaranthaceae), surviving under extreme xerohalophytic conditions, as influenced by diurnal rhythm or continuous dark condition. We report here CO2 gas exchange and the kinetics of Chl a fluorescence of S. fruticosa, made every 3 hours (hrs) for 3 days, using a portable infra-red gas analyzer and a Handy PEA fluorimeter. Our measurements on CO2 gas exchange show the maximum rate of photosynthesis to be at 08:00 hrs under diurnal condition and at 05:00 hrs under continuous dark. From the OJIP phase of Chl a fluorescence transient, we have inferred that the maximum quantum yield of PSII photochemistry must have increased during the night under diurnal rhythm, and between 11:00 and 17:00 hrs under constant dark. Overall, our study has revealed novel insights into how photosynthetic reactions are affected by the photoperiodic cycles in S. fruticosa under high salinity. This study has further revealed a unique strategy operating in this xero-halophyte where the repair mechanism for damaged PSII operates during the dark, which, we suggest, contributes to its ecological adaptation and ability to survive and reproduce under extreme saline, high light, and drought conditions. We expect these investigations to help in identifying key genes and pathways for raising crops for saline and dry areas.
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- 2019
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28. The quest for osmosensors in plants
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Ashwani Pareek, Ramsong Chantre Nongpiur, and Sneh L. Singla-Pareek
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Crops, Agricultural ,0106 biological sciences ,0301 basic medicine ,Osmotic shock ,Osmotic concentration ,Physiology ,Climate Change ,Histidine kinase ,food and beverages ,Aquaporin ,Plant Science ,Genetically modified crops ,Biology ,01 natural sciences ,Cell biology ,Fight-or-flight response ,Cell wall ,03 medical and health sciences ,030104 developmental biology ,Osmotic Pressure ,Mechanosensitive channels ,Plant Physiological Phenomena ,Plant Proteins ,010606 plant biology & botany - Abstract
Osmotic stress has severe effects on crop productivity. Since climate change is predicted to exacerbate this problem, the development of new crops that are tolerant to osmotic stresses, especially drought and salinity stress, is required. However, only limited success has been achieved to date, primarily because of the lack of a clear understanding of the mechanisms that facilitate osmosensing. Here, we discuss the potential mechanisms of osmosensing in plants. We highlight the roles of proteins such as receptor-like kinases, which sense stress-induced cell wall damage, mechanosensitive calcium channels, which initiate a calcium-induced stress response, and phospholipase C, a membrane-bound enzyme that is integral to osmotic stress perception. We also discuss the roles of aquaporins and membrane-bound histidine kinases, which could potentially detect changes in extracellular osmolarity in plants, as they do in prokaryotes and lower eukaryotes. These putative osmosensors have the potential to serve as master regulators of the osmotic stress response in plants and could prove to be useful targets for the selection of osmotic stress-tolerant crops.
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- 2019
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29. Mapping the ‘early salinity response’ triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach
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Charanpreet Kaur, Sneh L. Singla-Pareek, Ashwani Pareek, and Nita Lakra
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0106 biological sciences ,0301 basic medicine ,Proteomics ,Salinity ,Osmotic shock ,Soil Science ,Plant Science ,Biology ,lcsh:Plant culture ,Photosynthesis ,01 natural sciences ,Superoxide dismutase ,03 medical and health sciences ,Pokkali ,lcsh:SB1-1110 ,Glutamate dehydrogenase ,RuBisCO ,food and beverages ,Citric acid cycle ,030104 developmental biology ,Biochemistry ,iTRAQ ,Seedlings ,Proteome ,Shoot ,biology.protein ,Original Article ,Rice ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Background To delineate the adaptive mechanisms operative under salinity stress, it is essential to study plant responses at the very early stages of stress which are very crucial for governing plant survival and adaptation. We believe that it is the initial perception and response phase which sets the foundation for stress adaptation in rice seedlings where plants can be considered to be in a state of osmotic shock and ion buildup. Results An isobaric Tags for Relative and Absolute Quantitation (iTRAQ) approach was used to analyze the pre-existing differences as well as the very early salt shock responsive changes in the proteome of seedlings of contrasting rice genotypes, viz salt-sensitive IR64 and salt-tolerant Pokkali. In response to a quick salt shock, shoots of IR64 exhibited hyperaccumulation of Na+, whereas in Pokkali, these ions accumulated more in roots. Interestingly, we could find 86 proteins to be differentially expressed in shoots of Pokkali seedlings under non-stress conditions whereas under stress, 63 proteins were differentially expressed in Pokkali shoots in comparison to IR64. However, only, 40 proteins under non-stress and eight proteins under stress were differentially expressed in Pokkali roots. A higher abundance of proteins involved in photosynthesis (such as, oxygen evolving enhancer proteins OEE1 & OEE3, PsbP) and stress tolerance (such as, ascorbate peroxidase, superoxide dismutase, peptidyl-prolyl cis-trans isomerases and glyoxalase II), was observed in shoots of Pokkali in comparison to IR64. In response to salinity, selected proteins such as, ribulose bisphosphate carboxylase/oxygenase activase, remained elevated in Pokkali shoots. Glutamate dehydrogenase - an enzyme which serves as an important link between Krebs cycle and metabolism of amino acids was found to be highly induced in Pokkali in response to stress. Similarly, other enzymes such as peroxidases and triose phosphate isomerase (TPI) were also altered in roots in response to stress. Conclusion We conclude that Pokkali rice seedlings are primed to face stress conditions where the proteins otherwise induced under stress in IR64, are naturally expressed in high abundance. Through specific alterations in its proteome, this proactive stress machinery contributes towards the observed salinity tolerance in this wild rice germplasm. Electronic supplementary material The online version of this article (10.1186/s12284-018-0259-5) contains supplementary material, which is available to authorized users.
- Published
- 2019
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30. Methylglyoxal-glyoxalase system as a possible selection module for raising marker-safe plants in rice
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Ashwani Pareek, Khirod Kumar Sahoo, Rohit Joshi, Charanpreet Kaur, Sneh L. Singla-Pareek, Brijesh K. Gupta, and Sudhir K. Sopory
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biology ,Physiology ,Transgene ,fungi ,Methylglyoxal ,Plant Science ,Genetically modified crops ,Genetically modified rice ,Lactoylglutathione lyase ,chemistry.chemical_compound ,Biochemistry ,chemistry ,biology.protein ,Molecular Biology ,Selection (genetic algorithm) ,Transformation efficiency ,Glyoxalase system ,Research Article - Abstract
Methylglyoxal (MG) is ubiquitously produced in all living organisms as a byproduct of glycolysis, higher levels of which are cytotoxic, leading to oxidative stress and apoptosis in the living systems. Though its generation is spontaneous but its detoxification involves glyoxalase pathway genes. Based on this understanding, the present study describes the possible role of MG as a novel non-antibiotic-based selection agent in rice. Further, by metabolizing MG, the glyoxalase pathway genes viz. glyoxalase I (GLYI) and glyoxalase II (GLYII), may serve as selection markers. Therefore, herein, transgenic rice harboring GLYI-GLYII genes (as selection markers) were developed and the effect of MG as a selection agent was assessed. The 3 mM MG concentration was observed as optimum for the selection of transformed calli, allowing efficient callus induction and proliferation along with high regeneration frequency (55 ± 2%) of the transgenic calli. Since the transformed calli exhibited constitutively higher activity of GLYI and GLYII enzymes compared to the wild type calli, the rise in MG levels was restricted even upon exogenous addition of MG during the selection process, resulting in efficient selection of the transformed calli. Therefore, MG-based selection method is a useful and efficient system for selection of transformed plants without significantly compromising the transformation efficiency. Further, this MG-based selection system is bio-safe and can pave way towards better public acceptance of transgenic plants.
- Published
- 2021
31. Silicon nutrition stimulates Salt-Overly Sensitive (SOS) pathway to enhance salinity stress tolerance and yield in rice
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Rupesh Deshmukh, Ramsong Chantre Nongpiur, Khalid Anwar, Sneh L. Singla-Pareek, Brijesh K. Gupta, Ashwani Pareek, and Khirod Kumar Sahoo
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0106 biological sciences ,0301 basic medicine ,Salinity ,Silicon ,Physiology ,Plant Science ,Photosynthetic efficiency ,Biology ,01 natural sciences ,Salt Stress ,03 medical and health sciences ,chemistry.chemical_compound ,Stress, Physiological ,Genetics ,Plant Proteins ,Oryza sativa ,food and beverages ,Oryza ,Salt Tolerance ,Genetically modified rice ,Horticulture ,030104 developmental biology ,Ion homeostasis ,chemistry ,Osmolyte ,Chlorophyll ,Shoot ,010606 plant biology & botany - Abstract
In rice (Oryza sativa), Si nutrition is known to improve salinity tolerance; however, limited efforts have been made to elucidate the underlying mechanism. Salt-Overly Sensitive (SOS) pathway contributes to salinity tolerance in plants in a major way which works primarily through Na+ exclusion from the cytosol. SOS1, a vital component of SOS pathway is a Na+/H+ antiporter that maintains ion homeostasis. In this study, we evaluated the effect of overexpression of Oryza sativa SOS1 (OsSOS1) in tobacco (cv. Petit Havana) and rice (cv. IR64) for modulating its response towards salinity further exploring its correlation with Si nutrition. OsSOS1 transgenic tobacco plants showed enhanced tolerance to salinity as evident by its high chlorophyll content and maintaining favorable ion homeostasis under salinity stress. Similarly, transgenic rice overexpressing OsSOS1 also showed improved salinity stress tolerance as shown by higher seed germination percentage, seedling survival and low Na+ accumulation under salinity stress. At their mature stage, compared with the non-transgenic plants, the transgenic rice plants showed better growth and maintained better photosynthetic efficiency with reduced chlorophyll loss under stress. Also, roots of transgenic rice plants showed reduced accumulation of Na+ leading to reduced oxidative damage and cell death under salinity stress which ultimately resulted in improved agronomic traits such as higher number of panicles and fertile spikelets per panicle. Si nutrition was found to improve the growth of salinity stressed OsSOS1 rice by upregulating the expression of Si transporters (Lsi1 and Lsi2) that leads to more uptake and accumulation of Si in the rice shoots. Metabolite profiling showed better stress regulatory machinery in the transgenic rice, since they maintained higher abundance of most of the osmolytes and free amino acids.
- Published
- 2021
32. Sensing and signalling in plant stress responses: ensuring sustainable food security in an era of climate change
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Sneh L. Singla-Pareek, Ashwani Pareek, Christine H. Foyer, Rohit Joshi, and Kapuganti Jagadis Gupta
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Food security ,Physiology ,Natural resource economics ,Climate Change ,Climate change ,Agriculture ,Plant Science ,Biology ,Plants ,Food Supply ,Signalling ,Food Security ,Sustainable agriculture ,Biological Phenomena - Published
- 2021
33. Pitchers of Nepenthes khasiana express several digestive-enzyme encoding genes, harbor mostly fungi and probably evolved through changes in the expression of leaf polarity genes
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Ashwani Pareek, Andrew M. Lynn, Jeremy Dkhar, and Yogendra Kumar Bhaskar
- Subjects
0106 biological sciences ,0301 basic medicine ,Plant Science ,01 natural sciences ,Homology (biology) ,Transcriptome ,03 medical and health sciences ,Plant defense ,lcsh:Botany ,Plant defense against herbivory ,Tendril ,Nepenthes khasiana ,Gene ,Body Patterning ,Regulator gene ,biology ,fungi ,Fungi ,Leaf transcriptome ,biology.organism_classification ,Caryophyllales ,lcsh:QK1-989 ,Plant Leaves ,Prey digestion ,030104 developmental biology ,Evolutionary biology ,Plant Stomata ,Digestive enzyme ,biology.protein ,Pitcher development and evolution ,Research Article ,010606 plant biology & botany - Abstract
Background A structural phenomenon seen in certain lineages of angiosperms that has captivated many scholars including Charles Darwin is the evolution of plant carnivory. Evidently, these structural features collectively termed carnivorous syndrome, evolved to aid nutritional acquisition from attracted, captured and digested prey. We now understand why plant carnivory evolved but how carnivorous plants acquired these attributes remains a mystery. In an attempt to understand the evolution of Nepenthes pitcher and to shed more light on its role in prey digestion, we analyzed the transcriptome data of the highly specialized Nepenthes khasiana leaf comprising the leaf base lamina, tendril and the different parts/zones of the pitcher tube viz. digestive zone, waxy zone and lid. Results In total, we generated around 262 million high-quality Illumina reads. Reads were pooled, normalized and de novo assembled to generate a reference transcriptome of about 412,224 transcripts. We then estimated transcript abundance along the N. khasiana leaf by mapping individual reads from each part/zone to the reference transcriptome. Correlation-based hierarchical clustering analysis of 27,208 commonly expressed genes indicated functional relationship and similar cellular processes underlying the development of the leaf base and the pitcher, thereby implying that the Nepenthes pitcher is indeed a modified leaf. From a list of 2386 differentially expressed genes (DEGs), we identified transcripts encoding key enzymes involved in prey digestion and protection against pathogen attack, some of which are expressed at high levels in the digestive zone. Interestingly, many of these enzyme-encoding genes are also expressed in the unopened N. khasiana pitcher. Transcripts showing homology to both bacteria and fungi were also detected; and in the digestive zone, fungi are more predominant as compared to bacteria. Taking cues from histology and scanning electron microscopy (SEM) photomicrographs, we found altered expressions of key regulatory genes involved in leaf development. Of particular interest, the expression of class III HOMEODOMAIN-LEUCINE ZIPPER (HD-ZIPIII) and ARGONAUTE (AGO) genes were upregulated in the tendril. Conclusions Our findings suggest that N. khasiana pitchers employ a wide range of enzymes for prey digestion and plant defense, harbor microbes and probably evolved through altered expression of leaf polarity genes.
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- 2020
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34. Stacking for future: Pyramiding genes to improve drought and salinity tolerance in rice
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Sneh L. Singla-Pareek, Ashwani Pareek, Rohit Joshi, and Anjali Shailani
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Candidate gene ,Salinity ,Physiology ,Transgene ,Cellular detoxification ,Plant Science ,Genetically modified crops ,Biology ,Crop ,Stress, Physiological ,Genetics ,Plant breeding ,Abiotic component ,business.industry ,fungi ,food and beverages ,Oryza ,Cell Biology ,General Medicine ,Salt Tolerance ,Plants, Genetically Modified ,Biotechnology ,Droughts ,Plant Breeding ,business - Abstract
Abiotic stresses, such as drought and salinity, adversely affect rice production and cause a severe threat to food security. Conventional crop breeding techniques alone are inadequate for achieving drought stress tolerance in crop plants. Using transgenic technology, incremental improvements in tolerance to drought and salinity have been successfully attained via manipulation of gene(s) in several crop species. However, achieving the goal via pyramiding multiple genes from the same or different tolerance mechanisms has received little attention. Pyramiding of multiple genes can be achieved either through breeding, by using marker-assisted selection, or by genetic engineering through molecular stacking co-transformation or re-transformation. Transgene stacking into a single locus has added advantages over breeding or re-transformation since the former assures co-inheritance of genes, contributing to more effective tolerance in transgenic plants for generations. Drought, being a polygenic trait, the potential candidate genes for gene stacking are those contributing to cellular detoxification, osmolyte accumulation, antioxidant machinery, and signaling pathways. Since cellular dehydration is inbuilt in salinity stress, manipulation of these genes results in improving tolerance to salinity along with drought in most of the cases. In this review, attempts have been made to provide a critical assessment of transgenic plants developed through transgene stacking and approaches to achieve the same. Identification and functional validation of more such candidate genes is needed for research programs targeting the gene stacking for developing crop plants with high precision in the shortest possible time to ensure sustainable crop productivity under marginal lands.
- Published
- 2020
35. Gaining Acceptance of Novel Plant Breeding Technologies
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Sneh L. Singla-Pareek, Christine H. Foyer, Sven Anders, Kapuganti Jagadis Gupta, Ashwani Pareek, and Wallace Cowling
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0106 biological sciences ,0301 basic medicine ,Technology ,Food security ,business.industry ,Corporate governance ,Climate Change ,Climate change ,Agriculture ,Plant Science ,Biology ,Plants ,01 natural sciences ,Novel gene ,03 medical and health sciences ,Plant Breeding ,030104 developmental biology ,Sustainability ,Plant breeding ,business ,Productivity ,Environmental planning ,010606 plant biology & botany - Abstract
Ensuring the sustainability of agriculture under climate change has led to a surge in alternative strategies for crop improvement. Advances in integrated crop breeding, social acceptance, and farm-level adoption are crucial to address future challenges to food security. Societal acceptance can be slow when consumers do not see the need for innovation or immediate benefits. We consider how best to address the issue of social licence and harmonised governance for novel gene technologies in plant breeding. In addition, we highlight optimised breeding strategies that will enable long-term genetic gains to be achieved. Promoted by harmonised global policy change, innovative plant breeding can realise high and sustainable productivity together with enhanced nutritional traits.
- Published
- 2020
36. Membrane dynamics during individual and combined abiotic stresses in plants and tools to study the same
- Author
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Nishtha Rawat, Sneh L. Singla-Pareek, and Ashwani Pareek
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Abiotic component ,Salinity ,Physiology ,Chemistry ,Cellular homeostasis ,Biological membrane ,Cell Biology ,Plant Science ,General Medicine ,Lipidome ,Plants ,Adaptation, Physiological ,Cell biology ,Droughts ,Membrane ,Membrane protein ,Stress, Physiological ,Proteome ,Genetics ,Adaptation - Abstract
The plasma membrane (PM) is possibly the most diverse biological membrane of plant cells; it separates and guards the cell against its external environment. It has an extremely complex structure comprising a mosaic of lipids and proteins. The PM lipids are responsible for maintaining fluidity, permeability and integrity of the membrane and also influence the functioning of membrane proteins. However, the PM is the primary target of environmental stress, which affects its composition, conformation and properties, thereby disturbing the cellular homeostasis. Maintenance of integrity and fluidity of the PM is a prerequisite for ensuring the survival of plants during adverse environmental conditions. The ability of plants to remodel membrane lipid and protein composition plays a crucial role in adaptation towards varying abiotic environmental cues, including high or low temperature, drought, salinity and heavy metals stress. The dynamic changes in lipid composition affect the functioning of membrane transporters and ultimately regulate the physical properties of the membrane. Plant membrane-transport systems play a significant role in stress adaptation by cooperating with the membrane lipidome to maintain the membrane integrity under stressful conditions. The present review provides a holistic view of stress responses and adaptations in plants, especially the changes in the lipidome and proteome of PM under individual or combined abiotic stresses, which cause alterations in the activity of membrane transporters and modifies the fluidity of the PM. The tools to study the varying lipidome and proteome of the PM are also discussed.
- Published
- 2020
37. Mitigating the impact of climate change on plant productivity and ecosystem sustainability
- Author
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Christine H. Foyer, Ashwani Pareek, and Om Parkash Dhankher
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Ecosystem sustainability ,Food security ,Physiology ,Climate Change ,rice ,Climate change ,Plant Science ,Special Issue Editorial ,drought ,food security ,eXtra Botany ,Heat stress ,salinity ,Salinity ,heat stress ,Plant productivity ,Environmental protection ,wheat ,Environmental science ,Ecosystem ,Plant Physiological Phenomena - Published
- 2020
38. Forward and reverse genetics approaches for combined stress tolerance in rice
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Rajeev N. Bahuguna, Sneh L. Singla-Pareek, Fatma Sarsu, Mirza Mofazzal Islam, Priyanka Gupta, Jayram Bagri, Deepti Singh, Ashwani Pareek, Azri Kusuma Dewi, and Lan Tao
- Subjects
0106 biological sciences ,0301 basic medicine ,education.field_of_study ,Food security ,Agroforestry ,business.industry ,Crop yield ,fungi ,Population ,food and beverages ,Staple food ,Plant Science ,Biology ,01 natural sciences ,Crop ,03 medical and health sciences ,030104 developmental biology ,Phenomics ,Agriculture ,Food processing ,business ,education ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Climate change impact on global agricultural food production has been evident in the past few decades. Abiotic factors such as heat, drought, and salinity share a major proportion of crop yield losses and posing a serious threat to global food security. Developing climate resilient crops has become a frontier area of basic plant science and agricultural research. Persistent efforts by scientists to understand crop responses under natural environment and progress in the field of genomics and phenomics has provided unprecedented pace to crop development programs. Rice is the most important cereal crop and staple food for more than 3 billion people worldwide. Heat, drought and salinity stress are the major constraints for global rice production. Hence, efforts are warranted to develop climate-resilient rice cultivars that can produce substantially under different abiotic stresses. Crop plants seldom face single stress in the natural environment. Indeed, heat and drought or drought and salinity are documented as very obvious combinations suggesting multiple stress tolerance as an important breeding target. Forward and reverse genetic tools could effectively contribute towards achieving the target food production to feed the future population despite limiting resources and unfavorable climatic conditions. Genetic approaches adopted for crop improvement programs categorized as forward and reverse genetics are discussed highlighting their potential benefits for tailoring stress tolerant cultivars.
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- 2018
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39. Photosynthesis and salinity: are these mutually exclusive?
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Rohit Joshi, Ashwani Pareek, Silas Wungrampha, and Sneh L. Singla-Pareek
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0106 biological sciences ,0301 basic medicine ,Physiology ,business.industry ,fungi ,food and beverages ,Plant physiology ,Plant Science ,Photosynthetic efficiency ,Biology ,Photosynthesis ,01 natural sciences ,Salinity ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Agronomy ,chemistry ,Agriculture ,Halophyte ,Chlorophyll ,Adaptation ,business ,010606 plant biology & botany - Abstract
Photosynthesis has walked into the path of evolution for over millions of years. Organisms relying directly on photosynthesis, when subjected to adverse environments for a long duration, experience retardation in their growth and development. Salinity stress is perceived as one of the major threats to agriculture as it can cause an irreversible damage to the photosynthetic apparatus at any developmental stage of the plant. However, halophytes, a special category of plants, carry out all life processes, including photosynthesis, without showing any compromise even under high saline environments. The fascinating mechanism for Na+ exclusion from cytosol besides retaining photosynthetic efficiency in halophytes can provide a valuable genetic resource for improving salt stress tolerance in glycophytes. Understanding how plants stabilize their photosynthetic machinery and maintain the carbon balance under saline conditions can be extremely useful in designing crops for saline and dry lands.
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- 2018
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40. Biomass production and salinity response in plants: role of MicroRNAs
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Priyanka Gupta, Ashwani Pareek, Rohit Joshi, and Sneh L. Singla-Pareek
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0301 basic medicine ,Plant growth ,food and beverages ,Plant physiology ,Plant Science ,Computational biology ,Biology ,Salinity stress ,Salinity response ,Plant ecology ,03 medical and health sciences ,030104 developmental biology ,microRNA ,Target mrna ,Epigenetics ,Agronomy and Crop Science - Abstract
Small non-coding RNAs are one of the major contributors for diverse cellular functions in plants. MicroRNAs (miRNAs) are one such class of small non-coding RNAs playing crucial role in normal plant growth and development as well as under environmental stresses. miRNA modulates the transcripts level by directly binding to the transcript generated from the target gene and mediate either the cleavage of the target mRNA transcript or the inhibitition of translation of the target transcript or inhibition of target gene expression through epigenetic modification. In the current scenario, understanding the link between the diverse miRNAs and their orchestrated functioning for regulation of stress signaling as well as biomass production is a major challenge. In the present review, we have explored the current knowledge about the plant miRNA families and their functional aspects, particularly in the context of salinity stress tolerance and higher biomass production. We conclude that miRNA families such as miR156, 159, 164, 166, 319, 393, 396 and 414 are possibly mediating the cross talk between biomass production and salinity stress response. The present review may improve the current knowledge about the plant miRNAs and thus may help in generating crop plants for marginal lands.
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- 2017
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41. Molecular cloning and characterization of genes encoding FK506-binding proteins (FKBPs) in wheat (Triticum aestivum L.)
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Tanima Dutta, Harsimran Kaur, Prabhjeet Singh, Ashwani Pareek, Harpreet Singh, and Sumita Kumari
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0301 basic medicine ,Cloning ,Endoplasmic reticulum ,In silico ,Plant Science ,Isomerase ,Molecular cloning ,Biology ,03 medical and health sciences ,030104 developmental biology ,FKBP ,Biochemistry ,Protein folding ,Agronomy and Crop Science ,Gene ,Biotechnology - Abstract
The family of FK506-binding proteins (FKBPs) consists of several members, which show peptidyl prolyl cis–trans isomerase (PPIase) activity. PPIases facilitate the conversion of peptidyl prolyl bonds from cis to trans conformation, a rate-limiting step in protein folding. In the present study, we carried out cloning of cDNAs encoding three different wheat FKBPs viz., TaFKBP20-1, TaFKBP16-1 and TaFKBP15-1. In silico analysis suggested their likely localization to nucleus, cytosol and endoplasmic reticulum, respectively. Biochemical analyses demonstrated that none of the three purified FKBP proteins possesses detectable PPIase activity. Several putative interacting partners of TaFKBP20-1, TaFKBP16-1 and TaFKBP15-1were identified using online software tools. The results of this study provide further evidence that PPIase activity in plant FKBPs is not conserved, and these proteins may be playing important roles in the cell through interaction with target proteins.
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- 2017
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42. Manipulation of glyoxalase pathway confers tolerance to multiple stresses in rice
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Anil Kumar Singh, Ashwani Pareek, Brijesh K. Gupta, Khirod Kumar Sahoo, Khalid Anwar, Sneh L. Singla-Pareek, Sudhir K. Sopory, Amit K. Tripathi, Ajit Ghosh, and Priyanka Das
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0106 biological sciences ,0301 basic medicine ,Abiotic component ,Oryza sativa ,biology ,Physiology ,fungi ,Methylglyoxal ,food and beverages ,Plant Science ,Biotic stress ,Photosynthetic efficiency ,biology.organism_classification ,01 natural sciences ,Genetically modified rice ,Rhizoctonia solani ,03 medical and health sciences ,chemistry.chemical_compound ,Lactoylglutathione lyase ,030104 developmental biology ,chemistry ,Botany ,biology.protein ,010606 plant biology & botany - Abstract
Crop plants face a multitude of diverse abiotic and biotic stresses in the farmers' fields. Although there now exists a considerable knowledge of the underlying mechanisms of response to individual stresses, the crosstalk between response pathways to various abiotic and biotic stresses remains enigmatic. Here, we investigated if the cytotoxic metabolite methylglyoxal (MG), excess of which is generated as a common consequence of many abiotic and biotic stresses, may serve as a key molecule linking responses to diverse stresses. For this, we generated transgenic rice plants overexpressing the entire two-step glyoxalase pathway for MG detoxification. Through assessment of various morphological, physiological and agronomic parameters, we found that glyoxalase-overexpression imparts tolerance towards abiotic stresses like salinity, drought and heat and also provides resistance towards damage caused by the sheath blight fungus (Rhizoctonia solani) toxin phenylacetic acid. We show that the mechanism of observed tolerance of the glyoxalase-overexpressing plants towards these diverse abiotic and biotic stresses involves improved MG detoxification and reduced oxidative damage leading to better protection of chloroplast and mitochondrial ultrastructure and maintained photosynthetic efficiency under stress conditions. Together, our findings indicate that MG may serve as a key link between abiotic and biotic stress response in plants.
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- 2017
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43. Knockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition
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Khirod Kumar Sahoo, Ritesh Kumar, Rohit Joshi, Amit K. Tripathi, Ashwani Pareek, Sneh L. Singla-Pareek, and Brijesh K. Gupta
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0106 biological sciences ,0301 basic medicine ,Physiology ,Abiotic stress ,fungi ,Yield gap ,food and beverages ,Plant Science ,Meristem ,Biology ,Photosynthetic efficiency ,01 natural sciences ,Salinity ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Inflorescence ,Cytokinin ,Botany ,010606 plant biology & botany ,Panicle - Abstract
Cytokinins play a significant role in determining grain yield in plants. Cytokinin oxidases catalyse irreversible degradation of cytokinins and hence modulate cellular cytokinin levels. Here, we studied the role of an inflorescence meristem-specific rice cytokinin oxidase - OsCKX2 - in reducing yield penalty under salinity stress conditions. We utilized an RNAi-based approach to study the function of OsCKX2 in maintaining grain yield under salinity stress condition. Ultra-performance liquid chromatography-based estimation revealed a significant increase in cytokinins in the inflorescence meristem of OsCKX2-knockdown plants. To determine if there exists a correlation between OsCKX2 levels and yield under salinity stress condition, we assessed the growth, physiology and grain yield of OsCKX2-knockdown plants vis-a-vis the wild type. OsCKX2-knockdown plants showed better vegetative growth, higher relative water content and photosynthetic efficiency and reduced electrolyte leakage as compared with the wild type under salinity stress. Importantly, we found a negative correlation between OsCKX2 expression and plant productivity as evident by assessment of agronomical parameters such as panicle branching, filled grains per plant and harvest index both under control and salinity stress conditions. These results suggest that OsCKX2, via controlling cytokinin levels, regulates floral primordial activity modulating rice grain yield under normal as well as abiotic stress conditions.
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- 2017
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44. Proteomics of contrasting rice genotypes: Identification of potential targets for raising crops for saline environment
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Charanpreet Kaur, Nita Lakra, Ashwani Pareek, Sneh L. Singla-Pareek, and Khalid Anwar
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0106 biological sciences ,0301 basic medicine ,biology ,Physiology ,business.industry ,food and beverages ,Plant Science ,Oryza ,biology.organism_classification ,Photosynthesis ,Proteomics ,01 natural sciences ,Biotechnology ,Salinity ,03 medical and health sciences ,030104 developmental biology ,Agronomy ,Germination ,Genotype ,Proteome ,Identification (biology) ,business ,010606 plant biology & botany - Abstract
High salinity is one of the major problems in crop productivity, affecting seed germination as well as yield. In order to enhance tolerance of crops towards salinity, it is essential to understand the underlying physiological and molecular mechanisms. In this endeavor, study of contrasting genotypes of the same species differing in their response towards salinity stress can be very useful. In the present study, we have investigated temporal differences in morphological, physiological and proteome profiles of two contrasting genotypes of rice to understand the basis of salt tolerance. When compared to IR64 rice, Pokkali, the salt-tolerant wild genotype, has enhanced capacity to cope with stress, better growth rate and possesses efficient antioxidant system, as well as better photosynthetic machinery. Our proteome studies revealed a higher and an early abundance of proteins involved in stress tolerance and photosynthesis in Pokkali in comparison with IR64, which, in contrast, showed greater changes in metabolic machinery even during early duration of stress. Our findings suggest important differences in physicochemical and proteome profiles of the two genotypes, which may be the basis of observed stress tolerance in the salt-tolerant Pokkali.
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- 2017
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45. The Saltol QTL-localized transcription factor OsGATA8 plays an important role in stress tolerance and seed development in Arabidopsis and rice
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Kamlesh Kant Nutan, Ashwani Pareek, and Sneh L. Singla-Pareek
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Abiotic component ,Gene knockdown ,Oryza sativa ,biology ,Physiology ,Quantitative Trait Loci ,Arabidopsis ,food and beverages ,Oryza ,Plant Science ,Quantitative trait locus ,Photosynthetic efficiency ,Plants, Genetically Modified ,biology.organism_classification ,GATA Transcription Factors ,Cell biology ,Stress, Physiological ,Seeds ,Gene ,Transcription factor ,Plant Proteins - Abstract
GATA represents a highly conserved family of transcription factors reported in organisms ranging from fungi to angiosperms. A member of this family, OsGATA8, localized within the Saltol QTL in rice, has been reported to be induced by salinity, drought, and ABA. However, its precise role in stress tolerance has not yet been elucidated. Using genetic, molecular, and physiological analyses, in this study we show that OsGATA8 increases seed size and tolerance to abiotic stresses in both Arabidopsis and rice. Transgenic lines of rice were generated with 3-fold overexpression of OsGATA8 compared to the wild-type together with knockdown lines with 2-fold lower expression. The overexpressing lines showed higher biomass accumulation and higher photosynthetic efficiency in seedlings compared to the wild-type and knockdown lines under both normal and salinity-stress conditions. OsGATA8 appeared to be an integrator of diverse cellular processes, including K+/Na+ content, photosynthetic efficiency, relative water content, Fv/Fm ratio, and the stability to sub-cellular organelles. It also contributed to maintaining yield under stress, which was ~46% higher in overexpression plants compared with the wild-type. OsGATA8 produced these effects by regulating the expression of critical genes involved in stress tolerance, scavenging of reactive oxygen species, and chlorophyll biosynthesis.
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- 2019
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46. Engineering abiotic stress tolerance via CRISPR/ Cas-mediated genome editing
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Syed Adeel Zafar, Ashwani Pareek, Syed Shan-e-Ali Zaidi, Sneh L. Singla-Pareek, Xueyong Li, Om Parkash Dhankher, Shahid Mansoor, and Yashika Gaba
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0106 biological sciences ,0301 basic medicine ,Abiotic component ,Crops, Agricultural ,Gene Editing ,Physiology ,Cas9 ,Abiotic stress ,Structural gene ,Plant Science ,Computational biology ,Biology ,ENCODE ,Plants, Genetically Modified ,01 natural sciences ,Genome engineering ,03 medical and health sciences ,Plant Breeding ,030104 developmental biology ,Genome editing ,Stress, Physiological ,CRISPR ,CRISPR-Cas Systems ,010606 plant biology & botany - Abstract
Abiotic stresses, including drought, salinity, temperature, and heavy metals, pose a major challenge for crop production and cause substantial yield reduction worldwide. Breeding tolerant cultivars against these abiotic stresses is the most sustainable and eco-friendly approach to cope with this challenge. Advances in genome editing technologies provide new opportunities for crop improvement by employing precision genome engineering for targeted crop traits. However, the selection of the candidate genes is critical for the success of achieving the desired traits. Broadly speaking, these genes could fall into two major categories, structural and regulatory genes. Structural genes encode proteins that provide stress tolerance directly, whereas regulatory genes act indirectly by controlling the expression of other genes involved in different cellular processes. Additionally, cis-regulatory sequences are also vital for achieving stress tolerance. We propose targeting of these regulatory and/or structural genes along with the cis-regulatory sequences via the clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (Cas9) system as a robust, efficient, and practical approach for developing crop varieties resilient to climate change. We also discuss the possibility of creating novel quantitative trait loci for abiotic stress tolerance via the CRISPR/Cas-mediated targeting of promoters. It is hoped that these genome editing tools will not only make a significant contribution towards raising novel plant types having tolerance to multiple abiotic stresses but will also aid in public acceptance of these products in years to come. This article is an attempt to critically evaluate the suitability of available tools and the target genes for obtaining plants with improved tolerance to abiotic stresses.
- Published
- 2019
47. Physiological characterization of gamma-ray induced mutant population of rice to facilitate biomass and yield improvement under salinity stress
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Rohit Joshi, Rama Prashat, Prabodh C. Sharma, Sneh L. Singla-Pareek, and Ashwani Pareek
- Subjects
0106 biological sciences ,0301 basic medicine ,education.field_of_study ,Soil salinity ,Crop yield ,Population ,food and beverages ,Biomass ,Plant Science ,Biology ,Hydroponics ,01 natural sciences ,Salinity ,03 medical and health sciences ,030104 developmental biology ,Agronomy ,Tiller ,education ,Agronomy and Crop Science ,010606 plant biology & botany ,Panicle - Abstract
Higher crop productivity in a sustainable manner is being perceived as one of the most crucial factors to ensure food security in light of the shrinking arable land resources and limiting fresh water resources. Soil salinity is the chief climatic constraint to agricultural productivity, restricting the suitability of agricultural land and affecting both biomass and grain yields in crops, including rice. The objective of this study was to screen a collection of rice mutants (O. sativa L. cv IR64) produced by γ-ray irradiation, for their higher yield and biomass under saline conditions. The initial screening was carried out at seedling stage employing hydroponics system, followed by screening in saline microplots under standard agronomic practices. Mircoplots were maintained at three different saline levels i.e., low salinity (EC ∼ 6 dS/m), moderate salinity (EC ∼ 10 dS/m) and high salinity (EC ∼ 14 dS/m). Based on screening carried out for various yield and related parameters i.e., plant height, tiller number, shoot and root weight, total biomass, panicle length, and harvest index, four ideotypes were observed to be performing significantly better than the wild type plants. Most importantly, selected mutants, such as D100-211 and D100-209 showed an increase of 18 and 34% in yield as compared to WT plants under moderate saline conditions (EC = 10 dS/m). These results suggest that regulated genetic modulation can improve crops to get optimum biomass and yield despite environmental vagaries. Further, detailed genetic and molecular characterization of these mutants will help to identify and characterize the key genes regulating the traits for high biomass and yield under salinity stress in rice.
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- 2016
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48. Correction to: Stepping forward and taking reverse as we move ahead in genetics
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Ajay Arora, Ashwani Pareek, and Om Parkash Dhankher
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0106 biological sciences ,0301 basic medicine ,Engineering ,Hardware_MEMORYSTRUCTURES ,Physiology ,business.industry ,Cell Biology ,Plant Science ,01 natural sciences ,Data science ,Plant ecology ,03 medical and health sciences ,030104 developmental biology ,Plant biochemistry ,Genetics ,business ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
In the original publication of the article, the references were missing and the authors would like to update the references.
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- 2019
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49. Ectopic expression of Pokkali phosphoglycerate kinase-2 (OsPGK2-P) improves yield in tobacco plants under salinity stress
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Ratna Karan, Rohit Joshi, Ashwani Pareek, and Sneh L. Singla-Pareek
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Chlorophyll ,0106 biological sciences ,0301 basic medicine ,Salinity ,Genotype ,Transgene ,Germination ,Flowers ,Plant Science ,Genetically modified crops ,Sodium Chloride ,Biology ,01 natural sciences ,Ectopic Gene Expression ,03 medical and health sciences ,chemistry.chemical_compound ,Stress, Physiological ,Tobacco ,Botany ,Photosynthesis ,Plant Proteins ,Phosphoglycerate kinase ,Plant Stems ,Abiotic stress ,food and beverages ,Oryza ,Salt Tolerance ,General Medicine ,Plants, Genetically Modified ,Cell biology ,Phosphoglycerate Kinase ,030104 developmental biology ,Ion homeostasis ,chemistry ,Seedlings ,Ectopic expression ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Our results indicate that OsPGK2a-P gene is differentially regulated in contrasting rice cultivars under stress and its overexpression confers salt stress tolerance in transgenic tobacco. Phosphoglycerate kinase (PGK; EC = 2.7.2.3) plays a major role for ATP production during glycolysis and 1, 3-bisphosphoglycerate production to participate in the Calvin cycle for carbon fixation in plants. Whole genome analysis of rice reveals the presence of four PGK genes (OsPgks) on different chromosomes. Comparative expression analysis of OsPgks in rice revealed highest level of transcripts for OsPgk2 at most of its developmental stages. Detailed characterization of OsPgk2 transcript and protein showed that it is strongly induced by salinity stress in two contrasting genotypes of rice, i.e., cv IR64 (salt sensitive) and landrace Pokkali (salt tolerant). Ectopic expression of OsPgk2a-P (isolated from Pokkali) in transgenic tobacco improved its salinity stress tolerance by higher chlorophyll retention and enhanced proline accumulation, besides maintaining better ion homeostasis. Ectopically expressing OsPgk2a-P transgenic tobacco plants showed tall phenotype with more number of pods than wild-type plants. Therefore, OsPgk2a-P appears to be a potential candidate for increasing salinity stress tolerance and enhanced yield in crop plants.
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- 2015
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50. A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery
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Sneh L. Singla-Pareek, Kamlesh Kant Nutan, Nita Lakra, Priyanka Das, Ashwani Pareek, and Khalid Anwar
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Chlorophyll ,Salinity ,Genotype ,Physiology ,Molecular Sequence Data ,Germination ,Plant Science ,Genetically modified crops ,Biology ,Antioxidants ,Histones ,Superoxide dismutase ,Gene Expression Regulation, Plant ,Stress, Physiological ,Two-Hybrid System Techniques ,Tobacco ,Botany ,Gene expression ,Escherichia coli ,Amino Acid Sequence ,Proline ,Plant Proteins ,Cell Nucleus ,chemistry.chemical_classification ,Reactive oxygen species ,Abiotic stress ,Gene Expression Profiling ,fungi ,food and beverages ,Oryza ,Plants, Genetically Modified ,APX ,Adaptation, Physiological ,Droughts ,Cell biology ,Plant Leaves ,chemistry ,Seedlings ,biology.protein ,Reactive Oxygen Species ,Agronomy and Crop Science - Abstract
Plants have evolved a number of molecular strategies and regulatory mechanisms to cope with abiotic stresses. Among the various key factors/regulators, transcription factors (TFs) play critical role(s) towards regulating the gene expression patterns in response to stress conditions. Altering the expression of the key TFs can greatly influence plant stress tolerance. OsHBP1b (accession no. KM096571) is one such TF belonging to bZIP family, localized within the Saltol QTL, whose expression is induced upon salinity treatment in the rice seedlings. qRT-PCR based expression studies for OsHBP1b in seedlings of contrasting genotypes of rice showed its differential regulation in response to salinity stress. A GFP based in vivo study showed that the OsHBP1b protein is nuclear localized and possesses the trans-activation activity. As compared to the WT tobacco plants, the transgenic plants ectopically expressing OsHBP1b showed better survival and favourable osmotic parameters (such as germination and survival rate, membrane stability, K(+)/Na(+) ratio, lipid peroxidation, electrolyte leakage and proline contents) under salinity and drought stress. Under salinity conditions, the transgenic plants accumulated lower levels of reactive oxygen species as compared to the WT. It was also accompanied by higher activities of antioxidant enzymes (such as ascorbate peroxidase and superoxide dismutase), thereby demonstrating that transgenic plants are physiologically better adapted towards the oxidative damage. Taken together, our findings suggest that OsHBP1b contributes to abiotic stress tolerance through multiple physiological pathways and thus, may serve as a useful 'candidate gene' for improving multiple stress tolerance in crop plants.
- Published
- 2015
- Full Text
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