77 results on '"Subbotin, S. A."'
Search Results
2. Disregarding ZooBank registration results in the unavailability of Hemicaloosia graminis Zeng et al., 2012 (Nematoda, Tylenchida) under the ICZN Code.
- Author
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Inserra, R. N., Stanley, J. D., Troccoli, A., Chitambar, J., and Subbotin, S. A.
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PLANT nematodes ,PLANT species ,MORPHOMETRICS ,ELECTRONIC publications - Abstract
The article offers information on the description of the new species of plant parasitic nematode named Hemicaloosia (H.) vagisclera from Florida. It mentions that the description of new Hemicaloosia was obtained for publication in the on-line version of "Nematology" on April 27, 2012, but was not registered in ZooBank. It states that a morphological comparison of Hemicaloosia adults shows that their morphometrics and morphological features overlap in the two descriptions.
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- 2013
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3. Effect of the Biostimulants of Microbiological Origin on the Entomopathogenic and Plant Parasitic Nematodes from Miscanthus × Giganteus Plantations.
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Stefanovska, Tatyana, Skwiercz, Andrzej, Pidlisnyuk, Valentina, Boroday, Vira, Medkow, Artem, and Zhukov, Olexander
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PLANT nematodes ,INSECT nematodes ,GREATER wax moth ,MISCANTHUS ,PLANTATIONS ,HETERORHABDITIS ,NEMATODES - Abstract
This study aimed to evaluate the effect of biostimulants derived from Streptomyces avermitilis metabolites on entomopathogenic nematodes: Steinernema carpocapsae, Steinernema feltiae, and Heterorhabditis bacteriophora, obtained from the soil of several Miscanthus × giganteus plantations in 2020–2023. The nematodes were isolated, identified, and cultured using live insects (the greater wax moth Galleria mellonella). Three preparations containing biostimulants – Charkor, Stimpo, and Regoplant, were tested for compatibility with entomopathogenic and plant parasitic nematodes. Their effect on nematode survival was evaluated using the Petri dish test. The study showed that the effect of biostimulants on the survival of nematodes depended on the concentration of aversectin contained in the evaluated preparations. Stimpo and Regoplant had an adverse effect on plant parasitic nematodes. The highest G. mellonella mortality was observed at the higher dose of Charkor (0.4%), and the lowest at the lower dose of Regoplant (1.22%). The study showed that the virulence of the nematodes decreased after 48 hours of incubation in Regoplant and Stimpo solutions containing aversectin. The degree of interaction between nematodes depended on the nematode species, trophic preferences, and the concentration of active ingredients in the preparations. This conclusion is crucial for the selection of appropriate types of entomopathogenic nematodes and the application rate of plant parasitic nematodes in the assessment of their short- and long-term spread, persistence, and recycling in field conditions. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Community structure and functional diversity of soil nematodes from Udupi district, Karnataka, India.
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M. V., Keshava Murthy and A., Shwetha
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SOIL nematodes ,PLANT nematodes ,POPULATION ecology ,MULTICELLULAR organisms ,SOIL sampling - Abstract
Nematodes constitute the most significant, most numerous, and diversified set of multicellular organisms on the earth. They l ive in various environments and exhibit a wide range of behavioural patterns. In the soil food web, they can be found at various trophic levels as herbivores (plant parasitic nematodes), bacterivores, fungivores, omnivores, and predators. As there were fewer studies on nematode ecology in the Udupi region, the present study aims to study the community structure and functional diversity of soil nematodes. Soil samples were collected following opportunistic random sampling employing a soil auger and were stored at 40C until transported to the laboratory. Nematodes were isolated from soil, killed, fixed, dehydrated, and displayed on a glass slide after isolation. The standard keys were used to identify the individual to genera level. 62 genera of soil nematodes belonging to 26 families and 7 orders were identified. Predator were the most prevalent communities. Various statistical indices for assessing nematode population ecology and nematodes specific indices were also calculated and it indicated a significant abundance of large plant parasitic nematodes. The region exhibits low levels of labile organic carbon and nutrien t enrichment (Enrichment Index (EI):14.06 to 21.22). Despite this, the soil food web in the region is well-structured, indicated by Structure Index (SI) (85.51 to 89.74). Prevalence of fungal decomposition dominance and the soil appears to be minimally disturbed, as indicated by high channel index values and low Basal Index (BI) values, respectively. [ABSTRACT FROM AUTHOR]
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- 2023
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5. First Report of Asphodelus microcarpus as a New Host of Stunt Nematode, Tylenchorhynchus spp., on the Western Mediterranean Coast of Egypt.
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El-Nuby, Ahmed S. M.
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PLANT nematodes ,WILD plants ,DESERT plants ,NATIVE plants ,HOST plants ,PLANT collecting - Abstract
Copyright of Egyptian Journal of Agronematology is the property of Egyptian Society for Agronematology and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2023
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6. Nematode–citrus plant interactions: host preference, damage rate and molecular characterization of Citrus root nematode Tylenchulus semipenetrans.
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Bozbuga, R., Yildiz, S., Yuksel, E., Özer, G., Dababat, A. A., and İmren, M.
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NEMATODES ,HOST plants ,CITRUS ,PLANT nematodes ,ROOT-knot nematodes ,MICROORGANISMS ,SOIL density - Abstract
Citrus plants are host to several plant parasitic nematodes (PPNs), which are microscopic organisms. Among PPNs, the citrus root nematode, T. semipenetrans (Cobb 1913) (Tylenchida: Tylenchulidae), causes significant damage to citrus plantations worldwide. Understanding citrus nematode populations, precise identification, host preference among citrus species, and damage threshold are crucial to control T. semipenetrans. The minutiae of citrus plant–nematode interactions, nematode density and molecular nematode identification are not well understood. In this study, nematode species and density in citrus orchards, host specialization, molecular and morphological characteristics of nematodes were assessed.Molecular and morphological methods, host–nematode interactions, host (citrus species) preference, damage economic threshold (ET), and economic injury level (EIL) were determined using laboratory methods and field sampling. Citrus plantations in different provinces in the Mediterranean region of Turkey were investigated.Nematode species were identified molecularly and morphologically. ITS sequences revealed that samples were infected by citrus root nematode T. semipenetrans. The lowest nematode density was in C. reticulata in Mersin (53 2nd stage juveniles (J2s) 100 g−1 soil), while the highest density was from Hatay in C. sinensis (12173 J2s 100 g−1 soil). Highest citrus nematode population density was on roots of C. reticulata, followed by C. sinensis, C. limon, and C. paradisi.The citrus nematode is more common than was thought and population fluctuations change according to specific citrus species. Environmental conditions, host and ecological factors, such as temperature, soil pH, and soil nutrients, might influence nematode populations in citrus orchards. Investigating nematode density in diverse soil ecologies and the responses of different resistant/tolerant citrus species and cultivars to nematode populations is essential in future studies. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Contents.
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SOYBEAN cyst nematode ,GOLDEN nematode ,PLANT nematodes ,CONIFER wilt ,SOIL nematodes ,INSECT nematodes ,PINEAPPLE ,NEMATOCIDES - Published
- 2021
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8. First Report of Bitylenchus hispaniensis, Pratylenchoides alkani, and Helicotylenchus vulgaris in Association with Cultivated and Wild Olives in Crete, Greece and Molecular Identification of Helicotylenchus microlobus and Merlinius brevidens.
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Tzortzakakis, Emmanuel A., Cantalapiedra-Navarrete, Carolina, Kormpi, Maria, Lazanaki, Maria S., Castillo, Pablo, and Archidona-Yuste, Antonio
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PLANT nematodes ,OLIVE diseases & pests ,MOLECULAR biology ,NEMATODE morphology - Abstract
Nematode samplings in cultivated and wild olive in Crete, Greece, yielded the presence of Bitylenchus hispaniensis, Helicotylenchus microlobus, Helicotylenchus vulgaris, Merlinius brevidens, and Pratylenchoides alkani. With the exception of H. microlobus and M. brevidens, reports of these plant-parasitic nematode species constitute new records for Greece. Bitylenchus hispaniensis is also reported for first time in a country outside of Spain, where it was originally described. Pratylenchoides alkani is herein reported for the second time in the Mediterranean area and for the first time in association with olive. Two further populations of H. microlobus and H. vulgaris, from walnut and goji berry from Greece, were identified. Molecular data for all of these nematode species are provided, resulting in the first integrative identification of these Greek populations. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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9. Root-knot nematode assessment: species identification, distribution, and new host records in Portugal.
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Rusinque, Leidy, João Camacho, Maria, Serra, Clara, Nóbrega, Filomena, and Inácio, Maria L.
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ROOT-knot nematodes ,PLANT nematodes ,ROOT-knot ,SOUTHERN root-knot nematode ,ROOT development ,SPECIES ,NEMATOCIDES - Abstract
Considered one of the most devastating plant parasitic nematodes worldwide, Meloidogyne spp. (commonly known as the root-knot nematodes (RKNs)) are obligate sedentary endoparasites that establish in the roots, causing hyperplasia and hypertrophy of surrounding cells, triggering the formation of galls. These galls will affect root development and physiology, leading to substantial yield losses. During 2017–2022, an extensive survey of Meloidogyne species was undertaken in Portugal (mainland and islands). A total of 1,071 samples were collected by the National Plant Protection Organization (DGAV) and private farmers from different regions of the country and were analysed at the Laboratory of Nematology (NemaINIAV). Samples in which the presence of Meloidogyne sp. was detected were used to perform bioassays to obtain females and juveniles for further studies. Since the accurate identification of RKNs is an important aspect of crop management, morphological and biochemical characterisation was performed. The most common morphological features were observed, showing consistency with previous descriptions of the genus. The biochemical identification using the esterase (EST) phenotype revealed the phenotypes of Meloidogyne arenaria, M enterolobi, M. hispanica, M. hapla, M. incognita, M javanica, and M. luci. Meloidogyne incognita and M. javanica were found to be the most prevalent species in the different regions followed by M. arenaria and M. hapla. This is the first distribution report performed in Portugal on RKNs, contributing to the development of management strategies and to updated information on the status of these pests in Europe. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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10. Breeding for root-knot nematode resistance in fruiting Solanaceous vegetable crops: a review.
- Author
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Pradhan, Pranaya, Naresh, Ponnam, Barik, Satyaprakash, Acharya, Gobinda Chandra, Bastia, Ramakrushna, Adamala, Anil Kumar, and Das, Mahendra Prasad
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ROOT-knot nematodes ,ROOT-knot ,PLANT nematodes ,EGGPLANT ,NEMATOCIDES ,PEPPERS ,CROPS ,VEGETABLES - Abstract
Root‐knot nematodes (Meloidogyne spp.) are the major group of plant parasitic nematodes impeding the cultivation of fruiting Solanaceous vegetable crops i.e., tomato, pepper, and eggplant worldwide. In the last two decades, significant progress has been achieved in the development of management strategies, however, the management of root-knot nematodes is still a serious concern due to their wide diversity of species and host range. Host plant resistance is the most viable and eco-friendly strategy. The knowledge of the available genetic resources of the cultivated and their related wild species with resistance to root-knot nematodes, gene action, and available molecular markers associated with resistance is crucial for breeding resistant/tolerant varieties/hybrids. With advances in next-generation sequencing technologies, fine mapping and the development of precise markers will aid in accelerated marker-assisted breeding. Recently grafting, which explores resistant rootstocks for managing root-knot nematodes has also been shown to be highly promising in Solanaceous vegetable crops. The current review highlights the present understanding of root-knot nematodes, resistant genetic resources, breeding of rootstocks, and advancements made in traditional and marker-assisted breeding for root-knot nematode resistance in tomato, pepper, and eggplant globally. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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11. Morphological and molecular characterisation of Heterodera koreana (Vovlas, Lamberti & Choo, 1992) Mundo-Ocampo, Troccoli, Subbotin, Del Cid, Baldwin & Inserra, 2008 (Nematoda: Heteroderidae) from bamboo in Japan.
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Shigeyuki SEKIMOTO, Taketo UEHARA, and Takayuki MIZUKUBO
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CYST nematodes ,PLANT nematodes ,NEMATODE control ,NEMATODE diseases of plants ,NEMATODE infections - Abstract
The Korean cyst nematode, Heterodera koreana, was recorded for the first time from Japan and characterised morphologically, morphometrically and molecularly. In total, 41 populations were detected from soil samples collected from the rhizosphere of four bamboo species in Japan: 31 populations from moso bamboo (Phyllostachys edulis), seven from madake (P. bambusoides), two from henon bamboo (P. nigra var. henonis) and one from fish pole bamboo (P. aurea). The morphology and morphometrics of the Japanese population were in agreement with those of the original description of H. koreana from South Korea and other subsequent descriptions from China and Iran, with the exception of some minor differences. The results of the phylogenetic analyses of the D2-D3 expansion segments of 28S rRNA gene and ITS rRNA gene sequences confirmed the species identification and phylogenetic relationship of H. koreana with other Heterodera species. The COI mtDNA gene sequences were obtained for the first time for H. koreana. Three COI haplotypes found in Japanese H. koreana populations showed a characteristic geographical distribution in Japan. [ABSTRACT FROM AUTHOR]
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- 2017
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12. New Cyst Nematode, Heterodera sojae n. sp. (Nematoda: Heteroderidae) from Soybean in Korea.
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HEONIL KANG, GEUN EUN, JIHYE HA, YONGCHUL KIM, NAMSOOK PARK, DONGGEUN KIM, and INSOO CHOI
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SOYBEAN cyst nematode ,HETERODERA ,HETERODERIDAE ,HYALINE membrane disease ,OILSEED plants ,PLANT nematodes ,CYST nematodes - Abstract
A new soybean cyst nematode Heterodera sojae n. sp. was found from the roots of soybean plants in Korea. Cysts of H. sojae n. sp. appeared more round, shining, and darker than that of H. glycines. Morphologically, H. sojae n. sp. differed from H. glycines by fenestra length (23.5-54.2 μm vs. 30-70 μm), vulval silt length (9.0-24.4 μm vs. 43-60 μm), tail length of J2 (54.3-74.8 μm vs. 40-61 μm), and hyaline part of J2 (32.6-46.3 μmvs. 20-30 μm). It is distinguished from H. elachista by larger cyst (513.4-778.3 μm3 343.4-567.1 μm vs. 350-560 μm 3 250-450 μm) and longer stylet length of J2 (23.8-25.3 μm vs. 17-19 μm). Molecular analysis of rRNA large subunit (LSU) D2-D3 segments and ITS gene sequence shows that H. sojae n. sp. is more close to rice cyst nematode H. elachista than H. glycines. Heterodera sojae n. sp. was widely distributed in Korea. It was found from soybean fields of all three provinces sampled. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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13. FIRST REPORT OF PRATYLENCHUS PANAMAENSIS IN THE SOUTHERN REGION OF COSTA RICA.
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Abarca-Durán, J., Núñez-Rodríguez, L. A., Flores-Chaves, L., and Humphreys-Pereira, D. A.
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PRATYLENCHUS ,COFFEE plantations ,TROPICAL crops ,COFFEE ,BAYESIAN field theory ,ROOT-knot nematodes ,PLANT nematodes - Abstract
Copyright of Nematropica is the property of Organization of Nematologists of Tropical America and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2022
14. 荷兰进境百合种球中线虫的分离及分子鉴定.
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张寅寅, 黑多尔, 刘玥婷, and 李鑫
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PLANT nematodes ,PRATYLENCHUS ,NEMATODES ,PLANT species ,LILIES ,BEEKEEPERS ,HARBORS - Abstract
Copyright of Journal of Agro-Environment Science is the property of Journal of Agro-Environment Science Editorial Board and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2022
- Full Text
- View/download PDF
15. Nothotylenchus persicus n. sp. (Nematoda: Anguinidae) from Kermanshah province, Iran.
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ESMAELI, Mehrab, HEYDARI, Ramin, CASTILLO, Pablo, and PALOMARES-RIUS, Juan E.
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PLANT nematodes ,PLANT parasites ,ANGUIDAE ,SQUAMATA ,PLANT classification - Abstract
A new species of the genus Nothotylenchus, N. persicus n. sp. was collected around the roots of grapevine and is described and illustrated herein based on morphological and molecular studies. The new species is characterised by a body length of 776-900 (im, delicate stylet 5-6 pm long, six lines in the lateral field, post-vulval uterine sac short, 10-18 pm long, female tail elongate-conoid with pointed terminus, and bursa covering 40-45% of tail length. Morphologically, N. persicus n. sp. appears closer to four known species of the genus, namely: N. hexaglyphus, N. affinis, N. medians and N. taylori. The results of phylogenetic analyses based on sequences of D2-D3 expansion region of 28S rRNA gene confirmed the close molecular relationship between N. persicus n. sp. and other anguinids, but Nothotylenchus claded separately from Ditylenchus species. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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16. First Report of the Yellow Nutsedge Cyst Nematode, Heterodera cyperi, in Georgia, U.S.A.
- Author
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Hajihassani, Abolfazl, Dutta, Bhabesh, Jagdale, Ganpati B., and Subbotin, Sergei A.
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HETERODERA ,PLANT nematodes ,NEMATODE morphology ,MORPHOMETRICS - Abstract
Soil samples collected during a survey for plant-parasitic nematodes in Tift County GA in summer 2017 were submitted for routine diagnosis of nematodes to the Extension Nematology Lab at the Department of Plant Pathology, University of Georgia, Athens, Georgia. Cyst nematodes recovered by centrifugal flotation technique were discovered in the samples from two research sites in a field with a history of tobacco and vegetable production. Cyst nematodes from tobacco (10 cysts/100 cm3 of soil) and vegetable (2 cysts/100 cm3 of soil) sites had similar morphological features. Morphology and morphometric measurements of the cysts and J2 (Fig. 1A-C) were in agreement with those of Heterodera cyperi (Golden et al., 1962; Romero and López- Llorca, 1996). Measurements of J2 (n = 12) included the length (range = 443-494 μ m, mean = 467.4 μ m) and width (18.3-24.4 μ m, 20.6 μ m) of body, stylet (19.1-20.8 μ m, 20.3 μ m), tail (61.6.0-66.4 μ m, 64.2 μ m), body width at anus (11.9-14.1 μ m, 12.8 μ m), and hyaline tail terminus (22.7-29.2 μ m, 26.3 μ m). The lateral field of J2 had three lines. Cysts (n = 10; Fig. 1C) were lemon-shaped, light to dark brown in color with protruding neck and vulval cone. The cysts had ambifenestrated vulval cone and no bullae was present. Morphometrics included body length excluding neck (370.5-714.4 μ m, 555.7 μ m); body width (165.6-411.1 μ m, 310.9 μ m); neck length (36.5-66.3 μ m, 49.8 μ m); fenestra length (26.3-42.5 μ m, 35.8 μ m), and fenestra width (19.1- 31.5 μ m, 23.8 μ m). DNA was extracted from single cysts (n = 3) and internal transcribed spacer (ITS) of rRNA and partial cytochrome oxidase I (COI) genes were amplified with primers TW81/AB28 and Het-coxiF/Het-coxiR, respectively (Subbotin et al., 2001; Subbotin, 2015) and sequenced. The resulting sequences were deposited into the GenBank database (Accession no. MG825344 and MG857126) and also subjected to BLAST searches in the database. ITS sequence of H. cyperi showed 100% similarity (100% coverage) with that of a H. cyperi population from Spain (AF274388). COI sequence of H. cyperi showed 89% similarity (98% coverage) with that of H. guangdongensis (MF425735), and 88% similarity (83% coverage) with that of H. elachista (KC618473). The pathogenicity of H. cyperi was examined under greenhouse conditions using tobacco cv. K340, tomato cv. Tribute, cucumber cv. Thunder, and yellow nutsedge (Cyperus esculentus L.). 3-wk-old seedlings of the test plants were transferred into Deepot D25L cell containers (5-cm-diam. × 25.4-cm deep) filled with sterilized sand: soil mixture (1:2) and then inoculated with 1,000 eggs and J2 of H. cyperi. The plants were grown for 90 d in a greenhouse before examination of roots and extraction of cysts from the soil. Results showed that the nematode failed to reproduce on tobacco, tomato, and cucumber whereas white females and mature cysts of H. cyperi were observed on yellow nutsedge roots (Fig. 1E). The results confirmed that yellow nutsedeg was a host for the nematode, and tobacco, tomato, or cucumber were non-hosts. In the United States, H. cyperi was reported from Florida, North Carolina, and Arkansas (Subbotin et al., 2010) infecting Cyperus spp. Yellow nutsedge is considered a serious weed problem in many cropping systems including peanut, cotton, tobacco, and vegetable crops in the Southern United States. To our knowledge, this is the first report of H. cyperi infecting yellow nutsedge in Georgia. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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17. Plant-Soil Mediated Effects of Long-Term Warming on Soil Nematodes of Alpine Meadows on the Qinghai–Tibetan Plateau.
- Author
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Liu, Yanfang, Wang, Wenying, Liu, Pan, Zhou, Huakun, Chen, Zhe, and Suonan, Ji
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SOIL nematodes ,MOUNTAIN meadows ,SOIL heating ,PLANT nematodes ,MOUNTAIN soils ,PLANT parasites - Abstract
Simple Summary: Global warming causes disturbances to grasslands and has a wide range of impacts on biodiversity and ecosystem processes worldwide. Soil nematodes are good indicators of climate change and are considered to be one of the important driving forces for the succession of plant communities. Therefore, understanding the relationship between soil nematodes and aboveground communities is particularly important under long-term warming. We selected an alpine meadow on the Qinghai–Tibetan Plateau and conducted a long-term artificial warming experiment with five different gradients. We found that both plant and soil nematode community composition were affected by long-term warming. In addition, plant diversity and community composition profoundly affect the diversity of soil nematode communities, thus reflecting the dynamic processes and evolution of soil ecosystems. Global warming is one of the most pressing environmental issues today. Our study aimed to investigate how warming affected plant and soil nematode communities in alpine meadows on the Qinghai–Tibetan Plateau over the past seven years. An artificial warming experiment with different gradients was conducted from 2011 to 2018, including temperature increases of 0 °C (CK), 0.53 °C (A), 1.15 °C (B), 2.07 °C (C), and 2.17 °C (D), respectively. Cyperaceae plants were shown to be eliminated by increasing temperature, and plant community composition tended to cluster differently under different warming gradients. The number of nematodes decreased with the increase in soil depth, and the majority of them were observed in the topsoil layer. The individual densities of soil nematodes were 197 ind.·100 g
−1 dry soil at 10–20 cm and 188 ind.·100 g−1 dry soil at 20–30 cm in the A treatment, which was significantly higher than the CK (53 and 67 ind.·100 g−1 dry soil) (p < 0.05). The lowest relative abundance of bacterivore nematodes (Ba) was 31.31% in treatment A and reached the highest of 47.14% under the warming gradient of D (p < 0.05). The abundance of plant parasitic nematodes (Pp) was significantly reduced to 26.03% by excessive warming (2.17 °C increase) in comparison to CK (41.65%). The soil nematode community had the highest diversity with a 0.53 °C increase in soil temperature; 1.15 °C warming gradients were lower, and nematode communities tended to be simplified (p < 0.05). All nematode channel ratio (NCR) values were above 0.5, indicating that warming did not change the decomposition pathway of soil organic matter dominated by the bacterial channels. The Wasilewska Index (WI) in the D treatment increased significantly compared to other treatments (p < 0.05), indicating that the mineralized pathway of the food web was primarily involved with Ba and fungivores nematodes (Fu), which is conducive to the growth of micro-biophagous nematodes. The plant parasite index (PPI) decreased significantly in the D treatment compared with other treatments (p < 0.05), indicating that a high warming gradient caused a reduction in the maturity of Pp nematodes. The maturity index (MI) increased in the D treatment compared with A, B, and C treatments, indicating that overheating affected the nematode community in the later stage of succession and caused the soil to be less disturbed. A partial least squares path model (PLSPM) showed that warming indirectly affects Fu and Pp diversity by directly impacting the plant community as well as indirectly affecting Ba by directly affecting soil properties. In conclusion, plant diversity and community composition profoundly affect the soil nematode communities, thus reflecting the dynamic processes and evolution of soil ecosystems. [ABSTRACT FROM AUTHOR]- Published
- 2022
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18. FIRST REPORT OF THE Rotylenchus agnetis SZCZYGIEŁ, 1968, Rotylenchus pumilus PERRY, 1959 AND Paratylenchus nanus COBB, 1923 ASSOCIATED WITH Miscanthus × giganteus J. M. GREEF & DEUTER EX HODK. & RENVOIZE IN UKRAINE.
- Author
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Skwiercz, Andrzej, Stefanovska, Tatyana, Zouhar, Miloslav, Pidlisnyuk, Valentina, and Flis, Łukasz
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MISCANTHUS ,PLANT nematodes ,ENERGY crops - Abstract
During a survey of plant parasitic nematodes associated with Miscanthus × giganteus which was carried out in Ukraine in 2016-2017, an occurrence of Rotylenchus agnetis Szczygieł, 1968, Rotylenchus pumilus Perry, 1959 and Paratylenchus nanus Cobb, 1923 was found. To the best of our knowledge this is the first record of a parasite species which can damage M. × giganteus. The species were described morphologically and using molecular tools. Further profound study on pathogenicity of those species is needed. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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19. Potential of the coffee endophytic Bacillus cereus sensu lato strain CCBLR15 to control the plant-parasitic nematode Radopholus duriophilus.
- Author
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Duong, Benoit, Marraccini, Pierre, Etienne, Hervé, Villain, Luc, Hoang, Giang Thi, Khong, Giang Ngan, Lebrun, Michel, and Duponnois, Robin
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BACILLUS cereus ,PLANT nematodes ,COFFEE ,LYSIS ,PRATYLENCHUS ,INSECT nematodes ,CELL culture ,PLANT growth promoting substances - Abstract
Bacillus cereus sensu lato strain CCBLR15 is highly efficient in inducing in vitro the mortality of coffee-parasitic nematodes, including Pratylenchus coffeae and Radopholus duriophilus. In the present study, this strain was further characterised to investigate (1) its taxonomic position, (2) the secreted/non-secreted nature of its nematicidal compounds, and (3) its in planta biocontrol capacity towards R. duriophilus. Firstly, analysis of 16S rRNA gene sequences and motility test indicated that CCBLR15 was closely related to B. cereus sensu stricto. Secondly, nematodes separate expositions in vitro to CCBLR15 culture filtrate and cell lysate revealed that nematicidal activity was attributed to compounds released after bacterial cell lysis. Thirdly, CCBLR15 nematode biocontrol capacity was studied using three Coffea arabica cultivars, either seed- or cutting-propagated. Plants were therefore characterised by different developmental stages, referred to as 'early' and 'advanced', with respectively 2-3 and 6-8 leaf pairs. Additionally, plants were grown in unsterilised soil, with a one-month delay between inoculations of bacteria and nematodes to assess the persistence of the nematicidal effects. The presence of R. duriophilus in roots decreased plant growth only in one cultivar whose plants were inoculated at the 'early' stage. Nonetheless, CCBLR15 pre-inoculation significantly reduced the number of nematodes in roots of all cultivars and inhibited the negative effects of nematodes in 'early'-inoculated plants. These results demonstrate the capacity of CCBLR15 to control R. duriophilus and constitute an important step before studying the persistence of its biocontrol effects on a longer period or after plants establishment in the field. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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20. Morphological and Molecular Identification of Longidorus euonymus and Helicotylenchus multicinctus from the Rhizosphere of Grapevine and Banana in Greece.
- Author
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TZORTZAKAKIS, EMMANUEL A., CANTALAPIEDRA-NAVARRETE, CAROLINA, CASTILLO, PABLO, PALOMARES-RIUS, JUAN E., and ARCHIDONA-YUSTE, ANTONIO
- Subjects
PLANT nematodes ,INSECT morphology ,RHIZOSPHERE microbiology ,GRAPE diseases & pests ,BANANA diseases & pests ,RECOMBINANT DNA - Abstract
Plant-parasitic nematodes such as Longidorus euonymus and Helicotylenchus multicintctus are species widely distributed in central Europe as well as in Mediterranean area. In Greece, both species have been previously reported but no morphometrics or molecular data were available for these species. Nematode surveys in the rhizosphere of grapevines in Athens carried out in 2016 and 2017, yielded a Longidorus species identified as Longidorus euonymus. Similarly, a population of Helicotylenchus multicinctus was detected infecting banana roots from an outdoor crop in Tertsa, Crete. For both species, morphometrics and molecular data of Greek populations were provided, resulting in the first integrative identification of both nematode species based on morphometric and molecular markers, confirming the occurrence of these two nematodes in Greece as had been stated in earlier reports. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
21. Phylogenies of traits and functions in soil invertebrate assemblages.
- Author
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Ross, Giles M., Berg, Matty P., Salmon, Sandrine, and Nielsen, Uffe N.
- Subjects
SOIL invertebrates ,PLANT nematodes ,NUTRIENT cycles ,SOIL moisture ,CARBON cycle - Abstract
Soil invertebrates are members of terrestrial ecosystems, contributing to the processing of organic matter, resulting in carbon and nutrient cycling that is essential for continuous productivity. By linking species delineations, morphological traits and measured or inferred functional roles, we demonstrate a method for functional identification of soil faunal assemblages based on molecular information. Here we align the genetic inter‐relatedness and functional trait expression in nematodes and springtails. Nematodes were assigned feeding guild, plant parasitic feeding type and coloniser‐persister (c‐p) value, with springtail sequences assigned to soil vertical stratification level, soil moisture preference and a selection of morphological traits. We found that both nematode and springtail feeding preferences show significant phylogenetic clustering. In contrast, greater dispersal was found amongst nematode coloniser‐persister (c‐p) values and springtail soil vertical stratification level and moisture preferences. Minimum patristic (p) distances between species supported the clustering amongst nematode feeding guilds, with plant feeders being separated from all other guilds by at least p = 0.99. Distances between endoparasitic, ectoparasitic and sedentary plant parasitic nematodes were also distinct with minimal distances of p = 0.35–0.72 between parasitic types. Springtail stratification level and soil moisture preferences showed greater dispersion across phylogenies, with negligible between‐group minimum patristic distances. However, nematode c‐p values and springtail moisture preference alignments indicate some genetic conservation at the genus level. These results indicate how ecosystems can direct trait conservation beyond that of environmental stimuli. Being able to assign functional traits to novel sequences will allow individual species' likely contribution to ecosystem functioning to be inferred without the need for exact taxonomic identification. More broadly, such information can advance our understanding of the evolution of soil faunal traits and the contribution of diverse soil assemblages to functional soil systems, particularly those with a high proportion of undescribed species. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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22. First Report of the Spiral Nematode Rotylenchus incultus (Nematoda: Hoplolaimidae) from Cultivated Olive in Tunisia, with Additional Molecular Data on Rotylenchus eximius.
- Author
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GUESMI-MZOUGHI, ILHEM, ARCHIDONA-YUSTE, ANTONIO, CANTALAPIEDRA-NAVARRETE, CAROLINA, REGAIEG, HAJER, HORRIGUE-RAOUANI, NAJET, PALOMARES-RIUS, JUAN E., and CASTILLO, PABLO
- Subjects
NEMATODES ,ROTYLENCHUS ,OLIVE ,PLANT nematodes ,RHIZOSPHERE - Abstract
Spiral nematode species of the genus Rotylenchus have been reported on olive (Olea europaea L.) in several Mediterranean countries (Castillo et al., 2010; Ali et al., 2014). Nematological surveys for plant-parasitic nematodes on olive trees were carried out in Tunisia between 2013 and 2014, and two nematode species of Rotylenchus were collected from the rhizosphere of olive cv. Chemlali in several localities of Tunisia (Tables 1,2). Twenty-two soil samples of 3 to 4 kg were collected with a shovel from the upper 50 cm of soil from arbitrarily chosen olive trees. Nematodes were extracted from 500 cm³ of soil by centrifugal flotation method (Coolen, 1979). Specimens were heat killed by adding hot 4% formaldehyde solution and processed to pure glycerin using the De Grisse's (1969) method. Measurements were done using a drawing tube attached to a Zeiss III compound-microscope. Nematode DNA was extracted from single individuals and PCR assays were conducted as described by Castillo et al. (2003). Moderate-to-low soil populations of these spiral nematodes were detected (5.5-11.5, 1.5-5.0 individuals/500 cm³ of soil, respectively). This prompted us to undertake a detailed morphological and molecular comparative study with previous reported data. Morphological and molecular analyses of females identified these species as Rotylenchus eximius Siddiqi, 1964, and Rotylenchus incultus Sher, 1965. The morphology of R. eximius females (five specimens studied) was characterized by having a hemispherical lip region clearly off set, with four to five annuli, body without longitudinal striations, lateral fields areolated in the pharyngeal region only, stylet 32 to 36 mm long, and broadly rounded tail. The morphology of R. incultus females (51 females and 16 males; Table 2) was characterized by a hemispherical lip region with the basal annulus subdivided by irregular longitudinal striations, with three, rarely four annuli; stylet 21.5 to 27.5 mm long, female tail hemispherical with terminus regularly annulated; phasmids anterior to anus level (3-6 annuli above). The morphology of the isolated nematodes agreed with previous descriptions of R. eximius (Siddiqi, 1964; Castillo and Vovlas, 2005) and R. incultus (Sher, 1965; Castillo and Vovlas, 2005; Vovlas et al., 2008), respectively. A single individual was used for DNA extraction. Primers and PCR conditions used in this research were specified in Cantalapiedra-Navarrete et al. (2013), and a single amplicon of 800, 1,100, and 450 bp was obtained and sequenced for D2 to D3, ITS1, and cytochrome c oxidase subunit 1 (coxI), respectively. Sequence alignments for D2 to D3 (KX669231-KX669233), ITS1 (KX669238-KX669240), and cox I (KX669244-KX669245) from R. eximius, showed 99% to 97%, 98% to 94%, 93% similarity to other sequences of R. eximius deposited in GenBank (EU280794-DQ328741, EU373663-EU373664, JX015401-JX015402, respectively). Similarly, D2 to D3 (KX669234-KX669237), ITS1 (KX669241-KX669243), and coxI (KX669246-KX669249) sequence alignments from R. incultus, showed 99%, 99% to 95%, 99% to 90% similarity, respectively, to other sequences of R. incultus deposited in GenBank (EU280797, EU373672-EU373673, JX015403, respectively). The best fitted model of DNA evolution was obtained using µ Model Test v. 2.1.7 (Darriba et al. 2012) with the Akaike information criterion. BI analyses were performed under the general time reversible (GTR) with invariable sites and a gamma-shaped distribution of substitution rates (GTR + I + G) model for ITS1 and coxI. Phylogenetic analyses of ITS1 and coxI using Bayesian inference (BI) placed R. eximius and R. incultus from Tunisia in subclades that included all R. eximius and R. incultus sequences deposited in GenBank (Fig. 1), which agrees with previous results (Cantalapiedra-Navarrete et al., 2013). Morphology, morphometry, and molecular and phylogenetic data obtained from these samples were consistent with R. eximius and R. incultus identification. To our knowledge, this is the first report of R. incultus in Tunisia. Consequently, all these data suggest that spiral nematode species of the genus Rotylenchus are predominant in olive as previously reported in other Mediterranean areas (Ali et al., 2014). [ABSTRACT FROM AUTHOR]
- Published
- 2016
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23. First report of a stunt nematode Tylenchorhynchus zeae on corn in Gansu Province, China.
- Author
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Zhi Peng Xu, Hui Xia Li, Yong Gang Liu, Bao Cang Ren, Chun Hui Ni, and Jin Hui Ma
- Subjects
CORN ,CORN seedlings ,PLANT nematodes - Abstract
During a survey of plant parasitic nematodes in 2019, at Gansu Province, China, the stunt nematode Tylenchorhynchus zeae was found parasitizing corn seedlings. Females, males and juveniles of T. zeae were observed on soil and roots samples of corn after processing and extraction. This population of stunt nematodes was identified based on morphological and by sequencing the ITS1 region of rDNA and D2/D3 fragments of the 28 S rRNA. The ITS1 and the D2/D3 sequences of this population, shared 99.00 to 99.05% and 99.43 to 99.73% of similarity with sequences corresponding to T. zeae in GenBank, respectively. This is the first report of T. zeae infecting corn in Gansu Province, northwest China. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
24. Revisiting the modified Baermann extraction method: extraction efficiency of Radopholus similis using different extraction materials.
- Author
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Saikai, Kanan, Wanjala, Situma, Oduori, Celestine, and Coyne, Danny
- Subjects
SOIL nematodes ,RED soils ,ULTISOLS ,PLANT nematodes ,DISH towels - Abstract
Nematode extraction technique, nematode recovery rate, burrowing nematode The 200 ml water treatment just sufficiently submerged both soil types, whereas 400 ml water flooded samples to approx. 1 cm above the soil surface, which reduced nematode recovery in the higher clay content red soil but interestingly not in sand. The mean recovery rate, calculated as (number of recovered nematodes)/(number of nematodes in the inoculum) × 100, for red soil was 53% for first, 62% for second and 63% for third experiments, and 41% for first, 45% for second and 63% for third experiments for sand. Keywords: burrowing nematode; nematode extraction technique; nematode recovery rate EN burrowing nematode nematode extraction technique nematode recovery rate 1215 1218 4 11/23/21 20211001 NES 211001 In order to determine the threat that plant-parasitic nematodes pose to crop production, it is essential to establish an accurate estimation of their presence. [Extracted from the article]
- Published
- 2021
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25. A reference of identification keys to plant-parasitic nematodes (Nematoda: Tylenchida\Tylenchomorpha).
- Author
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Ghaderi, Reza, Hosseinvand, Manouchehr, and Eskandari, Ali
- Subjects
SOIL nematodes ,NEMATODES ,PLANT nematodes ,INFORMATION resources ,SCHOOL discipline ,SPECIES - Abstract
The present review has documented a list of keys for identifying plant-parasitic nematodes at different taxonomic levels including superfamily, family, subfamily, genus, and species. It was compiled as a current source of information to assist students and professionals in the discipline of nematology for identification of this important group of soil nematodes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
26. Decrypting species in the Nacobbus aberrans (Nematoda: Pratylenchidae) complex using integrative taxonomy.
- Author
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Lax, Paola, Gonzalez‐Ittig, Raúl E., Rondan Dueñas, Juan C., Andrade, Alberto J., Gardenal, Cristina N., Franco, Javier, and Doucet, Marcelo E.
- Subjects
BIOLOGICAL classification ,CYTOCHROME oxidase ,NEMATODE-plant relationships ,COLONIZATION (Ecology) ,PLANT nematodes - Abstract
The plant‐parasitic nematode Nacobbus aberranss.l. is a major agricultural pest of quarantine importance worldwide and is one of the top 10 nematodes in plant pathology because it causes significant losses in several crops. There are evidences of the existence of a species complex, with species being difficult to discriminate using only morphological characters. In this study, we aimed at resolving the taxonomic situation from a multi‐disciplinary approach, based on morphometric data and molecular analyses. The results supported the identification of three nominal species in the complex: N. aberranss.s., N. bolivianus and a new taxon, Nacobbus celatus sp. n. This new species, described based on the revision of published and new data, is widely distributed in the lowlands of Argentina. Our results also evidence the possible existence of a new taxon native to the Andean region of the same country. For the first time, the utility of cytochrome oxidase c subunit 1 barcoding for Nacobbus species identification is corroborated. This study also includes the estimation of divergence time among Nacobbus spp.; the possible geographical origin of the genus and colonization pattern are discussed. The present work shows the usefulness of an integrated approach to the resolution of systematic problems. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
27. Occurrence of plant-parasitic nematodes on enset (Ensete ventricosum) in Ethiopia with focus on Pratylenchus goodeyi as a key species of the crop.
- Author
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Kidane, Selamawit A., Meressa, Beira H., Haukeland, Solveig, Hvoslef-Eide, Trine, Magnusson, Christer, Couvreur, Marjolein, Bert, Wim, and Coyne, Danny L.
- Subjects
PLANT nematodes ,PRATYLENCHUS ,NEMATODES ,SPECIES ,POPULATION density ,FOOD security - Abstract
Summary: Enset (Ensete ventricosum) is an important starch staple crop, cultivated primarily in south and southwestern Ethiopia. Enset is the main crop of a sustainable indigenous African system that ensures food security in a country that is food deficient. Related to the banana family, enset is similarly affected by plant-parasitic nematodes. Plant-parasitic nematodes impose a huge constraint on agriculture. The distribution, population density and incidence of plant-parasitic nematodes of enset was determined during August 2018. A total of 308 fields were sampled from major enset-growing zones of Ethiopia. Eleven plant-parasitic nematode taxa were identified, with Pratylenchus (lesion nematode) being the most prominent genus present with a prominence value of 1460. It was present in each sample, with a highest mean population density per growing zone of 16 050 (10 g root)
−1 , although densities as high as 25 000 were observed in fields at higher altitudes in Guraghe (2200-3000 m a.s.l.). This lesion nematode is found in abundance in the cooler mountainous regions. Visible damage on the roots and corms was manifested as dark purple lesions. Using a combination of morphometric and molecular data, all populations were identified as P. goodeyi and similar to populations from Kenya, Uganda and Spain (Tenerife). Differences in population densities amongst cultivars indicate possible resistance of enset to P. goodeyi. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
28. Evaluation The Effect of Intercropping Garlic with Grapevines on Productivity, Phytoremediation, Competitive Indices and Plant Parasitic Nematode Community.
- Author
-
Mohsen, F. S., El-Ashry, R. M. A., and Zyada, H. G.
- Subjects
GARLIC ,PARASITIC plants ,INTERCROPPING ,CATCH crops ,GRAPES ,PLANT nematodes ,LAND use ,PHYTOREMEDIATION - Abstract
Copyright of Journal of Plant Production is the property of Egyptian National Agricultural Library (ENAL) and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2021
- Full Text
- View/download PDF
29. تأثیر گل گوگرد و چند کود شیمیایی بر فعالیت نماتد سیستی چغندرقند ( Heterodera schachtii ) در شرایط میکروپلات.
- Author
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الهام دهقان گودز, اکبر کارگربیده, رضا قادري, حبیباله حمزهزرق&, and رضا قاسمی
- Subjects
PLANT nematodes ,SULFUR fertilizers ,SUGAR beets ,FERTILIZERS ,SUGAR beet cyst nematode - Abstract
Reducing the damage of the cyst nematode Heterodera schachtii is one of the research fields in sugar beet producing countries. Using chemical fertilizers can improve soil fertility and reduce damages of plant parasitic nematodes. In this study, the effects of ammonium sulfate, calcium sulfate, zinc sulfate, potassium sulfate, potassium nitrate, sodium silicate, triple superphosphate, iron sequesterine and sulfur on H. schachtii and growth parameters of susceptible sugar beet cultivar (cv Sharif) were investigated in two experiments. The first experiment was performed in plastic pots containing 6 kg of pasteurized field soil and river sand (1:1), and the second one in pots filled with 9 kg of field soil for four and five months, respectively, both under microplot conditions. Fertilizers were mixed with pots soils before sowing and the nematode was inoculated by adding 200 g of infested soil containing 18 cysts with 4200 eggs. The results showed that chemical fertilizers and sulfur did not have significant effects on growth of the infected sugar beet plants in pasteurized mixed or field soils, and some of them reduced it. In the pasteurized soil, zinc sulfate 50 kg/ha, iron sequestrene 5 kg/ha, sodium silicate 10 kg/ha and triple superphosphate 100 kg/ha caused a relative decrease of more than 67% in the nematode final population and reproduction factor. In the field soil, these indices in triple superphosphate 100 kg/ha and sulfur 100 and 200 kg/ha were lower than other treatments, but were at the same statistical level with the control. The third experiment was performed in small containers filled with infested soil to investigate the effects of treatments on nematode egg hatching in greenhouse. The results showed that the highest hatching was happened in the treatment of ammonium sulfate 200 kg/ha, which was statistically at the same level with triple superphosphate 100 kg/ha. [ABSTRACT FROM AUTHOR]
- Published
- 2021
30. MOLECULAR IDENTIFICATION AND PHYLOGENETIC DIVERSITY OF CEREAL CYST NEMATODES (HETERODERA SPP.) POPULATIONS FROM ALGERIA.
- Author
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Mehalaine, K., İmren, M., Özer, G., Hammache, M., and Dababat, A. A.
- Subjects
CYST nematodes ,HETERODERA ,PLANT nematodes ,BRASSICACEAE ,NEMATODES ,SOYBEAN cyst nematode ,DATABASE searching ,MOLECULAR phylogeny - Abstract
Copyright of Nematropica is the property of Organization of Nematologists of Tropical America and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2020
31. New evidence of cryptic speciation in the family Longidoridae (Nematoda: Dorylaimida).
- Author
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Cai, Ruihang, Archidona‐Yuste, Antonio, Cantalapiedra‐Navarrete, Carolina, Palomares‐Rius, Juan E., and Castillo, Pablo
- Subjects
GENETIC speciation ,NEMATODES ,CYTOCHROME oxidase ,PLANT nematodes - Abstract
Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant‐parasitic nematodes. This increases the risk of species misidentification. We conducted an integrative morphometric and genetic study on two longidorid species to elucidate the existence of new cases of cryptic speciation within the genera Longidorus and Xiphinema. Detailed morphological, morphometrical, multivariate, and genetic studies were carried out, and mitochondrial and nuclear haploweb analyses were used to differentiate species within the L. iliturgiensis and X. hispanum complexes. Species delimitation using multivariate and haplonet tools of L. iliturgiensis species complex clearly separated L. tabernensis sp. nov. from L. iliturgiensis and L. indalus, and X. subbaetense sp. nov. from X. hispanum and X. adenohystherum. D2‐D3, partial 18S, and partial coxI regions were used for inferring their phylogenetic relationships with other species in each genus. The present study provides new insights into the diversity of Longidorus and Xiphinema species detected in southern Spain, and new evidence of cryptic speciation in both genera. These results support our hypothesis that the biodiversity of Longidoridae in southern Europe is higher than previously supposed and is still not fully clarified. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
32. Survey of Plant Parasitic Nematode Associated with Spinach, Swiss Chard and Table Beet in North Egypt.
- Author
-
Basyony, Ayman B. A., Ibrahim, Ibrahim K. A., Zeyadah, Sabreen M. A., and Kawanna, Maha A. I.
- Subjects
BEETS ,PARASITIC plants ,PLANT nematodes ,SPINACH ,CYST nematodes ,SUGAR beet cyst nematode ,SOIL nematodes - Abstract
Copyright of Alexandria Science Exchange Journal is the property of Alexandria Science Exchange Journal and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2020
- Full Text
- View/download PDF
33. Root‐lesion nematodes of potato: Current status of diagnostics, pathogenicity and management.
- Author
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Orlando, Valeria, Grove, Ivan G., Edwards, Simon G., Prior, Thomas, Roberts, David, Neilson, Roy, and Back, Matthew
- Subjects
POTATO growing ,COVER crops ,POTATOES ,NEMATODES ,PLANT nematodes ,FARMS ,VERTICILLIUM dahliae ,PRATYLENCHUS - Abstract
Root‐lesion nematodes of the genus Pratylenchus are migratory endoparasites with worldwide economic impact on several important crops including potato, where certain species like P. penetrans, P. neglectus, and P. scribneri reduce the yield and quality of potato tubers. Morphological identification of Pratylenchus spp. is challenging, and recent advancements in molecular techniques provide robust and rapid diagnostics to differentiate species without the need of specialist skills. However, the fact that molecular diagnostics are not available for all Pratylenchus species means that there are limitations in worldwide application. In general, root‐lesion nematodes are difficult to manage once introduced into agricultural land and damage can be related to pathogenicity and population densities. In addition, root‐lesion nematodes interact with fungi such as Verticillium dahliae, resulting in disease complexes that enhance the damage inflicted on the potato crop. Management interventions are often focused on limiting nematode reproduction before planting crops and include the application of nematicides, and cultural practices such as crop rotation, cover crops, biofumigation, and biological control. Understanding the limitations of the available crop protection strategies is important and there are many gaps for further study. This review discusses the status of the diagnosis, distribution, pathogenicity, and management of the main species of root‐lesion nematodes, reported to infect potatoes worldwide, and highlights areas for potential future research. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
34. First report and molecular characterization of the dagger nematode, Xiphinema oxycaudatum (Nematoda, Dorylaimidae) from South Africa.
- Author
-
Daramola, Fisayo Y., Knoetze, Rinus, Swart, Antoinette, and Malan, Antoinette P.
- Subjects
NEMATODES ,PLANT nematodes ,CYTOCHROME oxidase ,SOIL surveys ,PLANT viruses ,RHIZOSPHERE ,SCANNING electron microscopy - Abstract
Plant-parasitic nematodes of the genus Xiphinema Cobb, 1913 comprise a complex group of nematode species, some of which are important vectors of plant viruses. During a field survey to determine the soil health of an abandoned honeybush (Cyclopia genistoides) monoculture, a high density of the dagger nematode, Xiphinema oxycaudatum Lamberti & Bleve-Zacheo, 1979 (Nematoda, Dorylaimidae), was observed in soil around the roots of honeybush plants in an abandoned farmland at Bereaville, an old mission station in the Western Cape province of South Africa. Soil samples were taken from the rhizosphere of plants and nematodes were extracted from the soil using a modified extraction tray method. Specimen of the dagger nematodes were processed for scanning electron microscopy, morphological and molecular analysis. Molecular profiling of the nematode species was done in order to give an accurate diagnosis and to effectively discriminate the nematode from other species within the Xiphinema americanum group. Phylogenetic analysis based on the D2D3 expansion segment of the 28S gene supported a close relationship of species within the americanum group, however, the protein-coding cytochrome oxidase (coxI) of the mitochondrial gene provided a useful tool for distinguishing the nematode from other species within the group. This study represents the first report of X. oxycaudatum from South Africa. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
35. A COI DNA barcoding survey of Pratylenchus species in the Great Plains Region of North America.
- Author
-
Ozbayrak, Mehmet, Todd, Tim, Harris, Timothy, Higgins, Rebecca, Powers, Kirsten, Mullin, Peter, Sutton, Lisa, and Powers, Thomas
- Subjects
PRATYLENCHUS ,PLANT nematodes ,GENETIC barcoding ,BARLEY ,PLANT parasites ,SPECIES ,SUGAR beets ,NEMATODE infections - Abstract
Pratylenchus species are among the most common plant parasitic nematodes in the Great Plains Region of North America. Our goal was to survey Pratylenchus species diversity across the Great Plains region using a mitochondrial COI DNA barcode. The objectives were to (i) determine species boundaries of the common Pratylenchus species within the region, (ii) assess the host associations of the barcoded Pratylenchus specimens, and (iii) determine Pratylenchus distribution patterns throughout the region. A total of 860 soil samples, primarily associated with eight major crops, were collected from Colorado, Kansas, Montana, Nebraska, North Dakota, and Wyoming. From this total, 246 soil samples provided the majority of 915 individual nematode specimens that were amplified by PCR and sequenced for a 727 to 739 bp region of COI. Maximum likelihood, neighbor-joining, and Bayesian phylogenetic trees all recognized 19 distinct and well-supported haplotype groups. The most common and widespread haplotype group, representing 53% of all specimens was P. neglectus, detected from 178 fields in 100 counties and associated with fields growing wheat, corn, dry beans, barley, alfalfa, sugar beets, potatoes, and a vineyard. The second most prevalent haplotype group was P. scribneri, representing 30% of all specimens and recovered from 104 fields in 45 counties, and most frequently associated with corn. Mixed field populations were encountered in approximately 20% of infested fields, with P. neglectus and P. scribneri most often occurring together in corn-soybean cropping systems. Less frequently encountered from the region were P. hexincisus, P. thornei, P. penetrans, P. alleni, and P. zeae. Eight additional haplotype groups, potentially new Pratylenchus species, were discovered in the survey. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
36. Morphometric and genetic variability among Mediterranean cereal cyst nematode (Heterodera latipons) populations in Turkey.
- Author
-
İMREN, Mustafa, YILDIZ, Şenol, TOKTAY, Halil, DUMAN, Nagihan, and DABABAT, Abdelfattah A.
- Subjects
MORPHOMETRICS ,GENETICS ,HETERODERA avenae ,PLANT nematodes ,ANIMAL young ,WHEAT trade - Abstract
The Mediterranean cereal cyst nematode, Heterodera latipons, is an important plant parasitic nematode that negatively impacts cereal production worldwide, particularly in the Mediterranean Basin. Successful control of cereal cyst nematodes requires knowledge of the nematode species/pathotypes and their biology. However, little information is currently available concerning the phenotypic and genotypic variability of H. latipons populations in Turkey. This study analyzed the morphological/morphometric and genetic characteristics of Turkish H. latipons populations to define intraspecific distinctions between them. Morphological and morphometric studies focused on the pattern of the perineal region of cysts and second stage juveniles (J2), while the molecular analyses used sequenced ITS-rDNA regions targeting the internal transcribed spacer (ITS) region of rDNA. The data from these investigations demonstrate that nematode populations from Adana and Hatay provinces differ from the populations collected in Kilis, Gaziantep, and Mardin provinces. These phenotypic and genotypic differences between H. latipons populations may indicate that they are heterogenic, with at least two pathotypes. To date, this study is the most comprehensive analysis identifying H. latipons populations in major wheatproducing areas of Turkey. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
37. DESS: a versatile solution for preserving morphology and extractable DNA of nematodes.
- Author
-
YODER, Melissa, TANDINGAN DE LEY, Irma, KING, Ian Wm, MUNDO-OCAMPO, Manuel, MANN, Jenna, BLAXTER, Mark, POIRAS, Larisa, and DE LEY, Paul
- Subjects
NEMATODE morphology ,DIMETHYL sulfoxide ,PLANT nematodes ,POLYMERASE chain reaction ,CRYOPRESERVATION of organs, tissues, etc. - Abstract
A solution containing dimethyl sulphoxide, disodium EDTA, and saturated NaCl (abbreviated here as DESS) was tested for various applications in the preservation of nematodes for combined morphological and molecular analyses. The solution can be used to preserve individual nematodes, nematode extracts, or entire soil/sediment samples. Preserved material can be easily stored for months at room temperature, shipped by mail, or carried in luggage. Morphological features are usually well preserved; specimen quality being comparable to formalin-based fixatives and much better than ethanol fixation. Specimens can be transferred to glycerin with little or no modification of traditional protocols. Unlike formalin-preserved material, routine PCR can be performed on individual specimens after any of these procedures with success rates and amplification sizes comparable to PCR of fresh specimens. At this point we have no data on long-term preservation quality. Nevertheless, DESS solution clearly enhances and simplifies a wide range of nematological studies due to its combined suitability for morphological and molecular analyses, as well as its less hazardous chemical properties. [ABSTRACT FROM AUTHOR]
- Published
- 2018
38. Characterisation and pathogenicity of Ditylenchus dipsaci isolated from Phlox subulata in Japan.
- Author
-
Yoriko IKUYO, KABIR, Faisal, Sota OZAWA, Yuto KOIKE, Hideaki ISHIGURO, and Koichi HASEGAWA
- Subjects
VIRULENCE of nematodes ,DITYLENCHUS dipsaci ,PLANT nematodes ,PHLOX ,PHYSIOLOGY - Published
- 2018
- Full Text
- View/download PDF
39. Terrestrial Non-Parasitic Nematode Assemblages associated With Glyphosate-tolerant and Conventional Soybean-Based Cropping Systems.
- Author
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Mbatyoti, Akhona, Daneel, Mieke Stefanie, Swart, Antoinette, de Waele, Dirk, and Fourie, Hendrika
- Subjects
PLANT nematodes ,GLYPHOSATE ,CROPPING systems ,SOYBEAN varieties ,AGRICULTURE - Abstract
Information about the effects of glyphosate on nematodes is limited and contradictory, while none existing for South African agricultural fields. The abundance and identity of non-parasitic nematodes in the rhizospheres of commercial glyphosate-tolerant and conventional (non-glyphosate-tolerant), soybean cultivars from cultivated fields, and adjacent natural vegetation (reference system) were obtained for two growing seasons. The impact of glyphosate was also investigated on non-parasitic nematodes in a 2-year soybean-maize cropping system. Thirty-two non-parasitic nematode genera were identified from soils of the three field ecosystems, with most of the genera occurring in natural vegetation (28), and less in conventional (23) and glyphosatetolerant soybean (21). Bacterivores had the greatest diversity in soils of all three ecosystems during both seasons, while fungivores tended to be more abundant in glyphosate-tolerant soybean fields especially during the second season. Soils from the three ecosystems were disturbed and degraded with low abundance and diversity of omnivores and predators. Of the 14 genera identified from the soybean-maize cropping experiment, bacterivores dominated in terms of diversity in non-treated, and fungivores in glyphosate-treated plots. Soils from glyphosate-treated plots were degraded, less enriched and fungal-mediated, while those from non-treated plots were disturbed, enriched, and bacterial-mediated. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
40. Aboveground herbivory induced jasmonates disproportionately reduce plant reproductive potential by facilitating root nematode infestation.
- Author
-
Machado, Ricardo A. R., Arce, Carla C. M., McClure, Michael A., Baldwin, Ian T., and Erb, Matthias
- Subjects
JASMONATE ,PLANT reproduction ,PLANT nematodes ,COYOTE tobacco ,HERBIVORES - Abstract
Abstract: Different plant feeders, including insects and parasitic nematodes, can influence each other by triggering systemic changes in their shared host plants. In most cases, however, the underlying mechanisms are unclear, and the consequences for plant fitness are not well understood. We studied the interaction between leaf feeding Manduca sexta caterpillars and root parasitic nematodes in Nicotiana attenuata. Simulated M. sexta attack increased the abundance of root parasitic nematodes in the field and facilitated Meloidogyne incognita reproduction in the glasshouse. Intact jasmonate biosynthesis was found to be required for both effects. Flower counts revealed that the jasmonate‐dependent facilitation of nematode infestation following simulated leaf attack reduces the plant's reproductive potential to a greater degree than would be expected from the additive effects of the individual stresses. This work reveals that jasmonates mediate the interaction between a leaf herbivore and root parasitic nematodes and illustrates how plant‐mediated interactions can alter plant's reproductive potential. The selection pressure resulting from the demonstrated fitness effects is likely to influence the evolution of plant defense traits in nature. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
41. Anatomical Alterations in Plant Tissues Induced by Plant-Parasitic Nematodes.
- Author
-
Palomares-Rius, Juan E., Escobar, Carolina, Cabrera, Javier, Vovlas, Alessio, and Castillo, Pablo
- Subjects
PLANT nematodes ,PARASITISM ,CYTOPLASM - Abstract
Plant-parasitic nematodes (PPNs) interact with plants in different ways, for example, through subtle feeding behavior, migrating destructively through infected tissues, or acting as virus-vectors for nepoviruses. They are all obligate biotrophic parasites as they derive their nutrients from living cells which they modify using pharyngeal gland secretions prior to food ingestion. Some of them can also shield themselves against plant defenses to sustain a relatively long lasting interaction while feeding. This paper is centered on cell types or organs that are newly induced in plants during PPN parasitism, including recent approaches to their study based onmolecular biology combined with cell biology-histopathology. This issue has already been reviewed extensively for major PPNs (i.e., root-knot or cyst nematodes), but not for other genera (viz. Nacobbus aberrans, Rotylenchulus spp.). PPNs have evolved with plants and this co-evolution process has allowed the induction of new types of plant cells necessary for their parasitism. There are four basic types of feeding cells: (i) non-hypertrophied nurse cells; (ii) single giant cells; (iii) syncytia; and (iv) coenocytes. Variations in the structure of these cells within each group are also present between some genera depending on the nematode species viz. Meloidogyne or Rotylenchulus. This variability of feeding sites may be related in some way to PPN life style (migratory ectoparasites, sedentary ectoparasites, migratory ecto-endoparasites, migratory endoparasites, or sedentary endoparasites). Apart from their co-evolution with plants, the response of plant cells and roots are closely related to feeding behavior, the anatomy of the nematode (mainly stylet size, which could reach different types of cells in the plant), and the secretory fluids produced in the pharyngeal glands. These secretory fluids are injected through the stylet into perforated cells where they modify plant cytoplasm prior to food removal. Some species do not produce specialized feeding sites (viz. Ditylenchus, Subanguina), but may develop a specialized modification of the root system (e.g., unspecialized root galls or a profusion of roots). This review introduces new data on cell types and plant organs stimulated by PPNs using sources varying from traditional histopathology to new holistic methodologies. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
42. Oilseed radish/black oat subsidiary crops can help regulate plant-parasitic nematodes under non-inversion tillage in an organic wheat-potato rotation.
- Author
-
SCHMIDT, Jan H., FINCKH, Maria R., and HALLMANN, Johannes
- Subjects
SOIL conservation ,PEST control ,PLANT nematodes ,TILLAGE ,SUSTAINABILITY - Abstract
Soil conservation is one of the major challenges for agriculture in the 21st century. For this reason, non-inversion tillage systems including subsidiary crops have become popular over the last three decades in Europe. However, the adoption of new agricultural practices may change the diversity and abundance of certain pests and diseases. For example, plant-parasitic nematodes that are major threats towards cultivated plants may be promoted if good hosts, such as certain subsidiary crops and weeds, occur more frequently. The indigenous plant-parasitic nematode fauna under organic farming systems is already adapted to diverse crop rotations and usually dominated by nematodes with broad host ranges. These may be further enhanced in organic farming systems if noninversion tillage is introduced, which generally increases the abundance and biomass of certain weeds. We evaluated the early effects of non-inversion tillage and subsidiary crops in an organic wheat-potato rotation on plant-parasitic nematodes in two field experiments in two successive years. The total densities of plant-parasitic nematodes increased from an initial 1260 nematodes (100 ml soil)
-1 at the start of the experiment to 1850 and 1700 nematodes (100 ml soil)-1 after wheat under non-inversion and conventional tillage, respectively. Plant-parasitic nematode densities then decreased on average to 1100 and 560 nematodes (100 ml soil)-1 after subsidiary crops and potatoes, respectively. Parasitic nematode densities tended to be higher under non-inversion than conventional tillage, except where oilseed radish and black oats had been used as cover crops. For the latter, no differences between tillage treatments occurred. In the second experiment, about 1700 free-living nematodes (100 ml soil)-1 were found under conventional tillage without mulch while under reduced tillage with mulch their numbers were significantly higher at 3100 nematodes (100 ml soil)-1 . We conclude that an appropriate choice of subsidiary crops can be an important management factor for the long term sustainability of non-inversion tillage systems. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
43. Monoxenic Rearing of Ditylenchus weischeri and D. dipsaci and Microplot Examination of the Host Suitability of Yellow Pea to D. weischeri.
- Author
-
HAJIHASSANI, ABOLFAZL, TENUTA, MARIO, and GULDEN, ROBERT H.
- Subjects
DITYLENCHUS ,PEAS ,VERTICILLIUM dahliae ,PLANT nematodes ,PISUM - Abstract
Ditylenchus weischeri was recently reported in the provinces of Manitoba and Saskatchewan, Canada. Populations of D. weischeri from creeping thistle (Cirsium arvense L.) in Manitoba and D. dipsaci from garlic (Allium cepa L.) in Ontario were examined for their potential to grow on callused carrot (Daucus carota subsp. sativus) disks, alfalfa (Medicago sativa L.) and creeping thistle callus tissues, and pure cultures of eight fungal species, Botrytis cinerea, Fusarium solani, Rhizoctonia solani, Verticillium dahliae, Sclerotinia sclerotiorum, Cladosporium cucumerinum, Colletotrichum gloeosporioides, and Chaetomium spp. Ditylenchus weischeri and D. dipsaci could not be reared on any of the fungal isolates nor in the callus tissues of creeping thistle. In contrast to D. weischeri, D. dipsaci was successfully reared on the alfalfa callus tissue. On the callused carrot disks, with no media, an increase of 54 and 244 times the initial density of 80 nematodes was obtained for D. weischeri and D. dipsaci, respectively. Monoxenic rearing was performed using callused carrot disks to provide sufficient D. weischeri inoculum for the microplot study. The effect of D. weischeri on yellow pea varieties Agassiz and Bronco was determined in a microplot trial using initial densities of 0, 100, 200, 400, 800, 1600, and 3200 nematodes/plant. While it had no impact on pea grain yield, D. weischeri slightly reduced plant height, aboveground biomass, and pod length at the population densities of 1600 and 3200 nematodes/plant. The final population densities at harvest were not significantly different from the initial densities indicating the pea varieties were poor hosts to D. weischeri. The results of the present study indicate that D. weischeri is unlikely to be a pest of yellow pea for weather conditions of the Canadian Prairies. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
44. Morphological and molecular characteristics of foliar nematode attacking silver birch (Betula pendula Roth) in Poland.
- Author
-
CHAŁAŃSKA, A., BOGUMIŁ, A., WINISZEWSKA, G., KOWALEWSKA, K., and MALEWSKI, T.
- Subjects
EUROPEAN white birch ,ANEMONES ,PLANT nematodes ,PLANT morphology ,NUCLEOTIDE sequencing - Abstract
Aphelenchoides fragariae (Ritzema Bos, 1890) Christie, 1932 was isolated from leaves of silver birch (Betula pendula Roth) seedlings proving that the source of infection was anemones plants. This is the fi rst report to our best knowledge showing that the source of nematode infection of a woody plant could be a perennial plant. A. fragariae was identifi ed by morphometric and molecular analyses. Morphological diagnosis based on the bending shape of the tail of males and pronounced apex and rostrum proved to be the most accurate reliable characteristic. On the opposite, the high variability of the mucron shape in female tails made the identifi cation by microscopic analyses diffi cult. Identifi cation of the species was confi rmed by analysis of 28S rDNA sequences. The morphometric data of adults extracted from silver birch was compared with that of nematodes isolated from Anemone hupehensis (Lemoine) Lemoine. Males body length varied highly in samples collected from both host plant species. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
45. COMPARATIVE HISTOLOGY OF FEEDING SITES INDUCED BY CACTODERA ROSAE, GLOBODERA MEXICANA, AND MELOIDODERA ASTONEI (NEMATODA: HETERODERIDAE).
- Author
-
Hernandez, Y. Gómez, del Prado Vera, I. Cid, Jiménez, P. Yáñez, and Esteva, A. García
- Subjects
GLOBODERA ,ROOT-knot nematodes ,PLANT nematodes ,HETERODERIDAE ,PHLOEM - Abstract
Copyright of Nematropica is the property of Organization of Nematologists of Tropical America and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2017
46. First report of, and additional information on, Meloidogyne konaensis (Nematoda: Meloidogyninae) parasitising various crops in Brazil.
- Author
-
MONTEIRO, Jessica M. S., CARES, Juvenil E., GOMES, Ana Cristina M. M., CORREA, Valdir R., MATTOS, Vanessa S., SANTOS, Marcilene F. A., ALMEIDA, Maria Ritta A., SANTOS, Carmem D. G., CASTAGNONE-SERENO, Philippe, and CARNEIRO, Regina M. D. G.
- Subjects
PLANT isozymes ,ISOENZYMES ,PLANT parasites ,PLANT nematodes ,ELECTROPHORESIS - Abstract
In a survey for Meloidogyne spp. in different crops from 11 regions in Ceará State, Brazil, using esterase isozyme electrophoresis as a specific identification method, four atypical populations were characterised from cabbage, papaya, noni and canapum plants, all of which showed an esterase profile different from those previously detected in Brazil. Morphological studies showed typical characteristics of Meloidogyne konaensis. Perineal patterns of females were variable, similar to M. arenaria and M. incognita, stylet length 14-20 Qm. In females, the knobs gradually merged with the shaft and the dorsal pharyngeal gland orifice (DGO) ranged from 4 to 7 Qm. Although males are not frequently found, the stylet morphology provides the most useful source of diagnostic character for the species, having 6-12 large projections protruding from the shaft. The esterase pattern K3 is unique and species-specific with three major bands Rm 1.0, 1.17, 1.27 and a secondary band Rm 1.10. Some confusion about the true identity of this species was clarified in this study, including differentiation from M. paranaensis. A species-specific SCAR marker developed for M. paranaensis was tested and no amplification products were observed. In Neighbour-Joining analyses of ITS and D2-D3 rRNA sequences, M. konaensis from Brazil appeared clearly separated from M. paranaensis. Pathological tests indicated that coffee is not a host of M. konaensis as previously reported in the original description of this species. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
47. Characterisation of amphimictic and parthenogenetic populations of Pratylenchus bolivianus Corbett, 1983 (Nematoda: Pratylenchidae) and their phylogenetic relationships with closely related species.
- Author
-
TROCCOLI, Alberto, SUBBOTIN, Sergei A., CHITAMBAR, John J., JANSSEN, Toon, WAEYENBERGE, Lieven, STANLEY, Jason D., DUNCAN, Larry W., AGUDELO, Paula, MÚNERA URIBE, Gladis E., FRANCO, Javier, and INSERRA, Renato N.
- Subjects
PRATYLENCHUS ,RIBOSOMAL RNA genetics ,MORPHOMETRICS ,CAPE gooseberry ,PLANT nematodes ,POLYMERASE chain reaction - Abstract
Amphimictic populations of root-lesion nematodes with numerous males and females having three lip annuli, a functional spermatheca and non-areolated lateral field occur on sword fern (Nephrolepis exaltata) in Florida. Identified for decades as Pratylenchus penetrans, they appeared to be a morphologically separated species on the basis of a longer stylet (17.8-18.3 µm) than P. penetrans (15-17 µm) and different lip pattern in enface view (rectangular vs dumb-bell in P. penetrans). Morphologically similar amphimictic root-lesion nematodes have also been detected on flax lily in Costa Rica. Subsequent morphological observations indicated that these amphimictic root-lesion nematodes from fern and flax lily are closely related to the parthenogenetic species P. bolivianus, which has areolated lateral fields. In spite of the reproductive and morphological dissimilarities between these populations, their separation into different species was not supported by the results of molecular analyses of their DNA sequences. The populations used in these analyses included those that are amphimictic from Florida and Costa Rica and others that are parthenogenetic from the type locality in Bolivia, and geographically distant localities in Chile, China, Colombia and Europe. Phylogenetic analyses of the ITS and D2-D3 expansion segments of the 28S rRNA gene indicated that they belong to the same species, P. bolivianus, which consists of two morphotypes, P. bolivianus (am) amphimictic and P. bolivianus (pm) parthenogenetic, herein described and illustrated. Contradictory results were obtained by the analyses using a portion of the hsp90 gene. The phylogenetic study, which included sequences of other root-lesion nematodes, a topotype and geographical distant populations of P. zeae, revealed that P. bolivianus and P. zeae formed highly supported clades in the majority consensus trees. PCR with species-specific primers for rapid diagnostics of P. bolivianus and P. zeae were developed and tested. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
48. Morphological and molecular characterisation of one new and several known species of the reniform nematode, Rotylenchulus Linford & Oliveira, 1940 (Hoplolaimidae: Rotylenchulinae), and a phylogeny of the genus.
- Author
-
VAN DEN BERG, Esther, PALOMARES-RIUS, Juan E., VOVLAS, Nicola, TIEDT, Louwrens R., CASTILLO, Pablo, and SUBBOTIN, Sergei A.
- Subjects
ROTYLENCHULUS ,HOPLOLAIMIDAE ,ENDOPARASITES ,WOODY plants ,PLANT nematodes ,PLANT parasites - Abstract
The reniform nematodes of the genus Rotylenchulus are semi-endoparasites of numerous herbaceous and woody plant roots and are mainly distributed in tropical and subtropical regions. In this study, we provide morphological and molecular characterisation of six out of ten presently known valid species of Rotylenchulus: R. clavicaudatus, R. leptus, R. macrodoratus, R. macrosoma, R. renifonnis and R. sacchari from South Africa, USA, Italy and Spain. Rotylenchulus parvus was only studied morphologically. A new species, R. macrosomoides sp. n., isolated from soil and roots of sugarcane in South Africa, is described. The phylogeny of Rotylenchulus, as inferred from the analyses of D2-D3 of 28S rRNA, ITS rRNA, coxI mtDNA and hsp90 gene sequences, is presented. The study revealed that R. reniformis and R. macrosoma have a sister relationship, but that relationships between other Rotylenchulus species remain unresolved. The phylogenetic analysis also confirmed the hypothesis that this genus originated from the Afrotropical zoogeographical region. Our study revealed that R. reniformis and R. macrosomoides sp. n. have two distinct rRNA gene types and R. macrosoma have three rRNA gene types in their genomes. PCR with species-specific primers was developed for rapid diagnostics of R. reniformis. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
49. 18S rRNA and COI haplotype diversity of Trichodorus obtusus from turfgrass in South Carolina.
- Author
-
SHAVER, Bradly R., MARCHANT, Sergio, MARTIN, S. Bruce, and AGUDELO, Paula
- Subjects
TRICHODORUS ,TURFGRASS research ,PLANT nematodes ,PLANT parasites ,MITOCHONDRIAL DNA - Abstract
The stubby-root nematode, Trichodorus obtusus, was recently identified on zoysiagrass in South Carolina, USA. In Florida, T. obtusus causes more damage than other stubby-root nematodes encountered in turfgrass. The objective of this study was to use morphological analysis, mitochondrial DNA (COI: cytochrome oxidase 1) and nuclear (18S rRNA) sequence data to study the genetic structure and haplotype diversity of populations recovered from turfgrasses in South Carolina. Numerous morphological differences were observed among populations. Three 18S haplotypes were shared among South Carolina and Florida populations, and six mitochondrial haplotypes were identified in South Carolina samples. Of the six COI haplotypes, four haplotypes were restricted to one population from St Augustinegrass. The lowest haplotype diversity was found in samples from zoysiagrass. Sequences of the COI mtDNA gene of T. obtusus were published in GenBank and represent the first mtDNA sequences for the genus Trichodorus. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
50. Development and validation of SSR markers for the plant-parasitic nematode Subanguina moxae using genome assembly of Illumina pair-end reads.
- Author
-
Tomoaki TAKEUCHI, Madoka YAMAGUCHI, Ryusei TANAKA, Mehmet DAYI, Nobuo OGURA, and Taisei KIKUCHI
- Subjects
PLANT nematodes ,NEMATODE-plant relationships ,SHORT tandem repeat analysis ,MICROBIAL genomes ,GENETIC polymorphisms - Abstract
Subanguina moxae, belonging to the subfamily Anguininae, is an obligate parasite of Artemisia plants, which are widely used as cooking herbs and in traditional medicine in East Asia. Because the nematode is distributed throughout East Russia and East Asia, there is concern about the potential for significant damage to commercial farming; however, details about its biology remain unclear. To investigate the genetic diversity of S. moxae, we developed 2243 simple sequence repeat (SSR) markers using Illumina short reads of the genomic DNA.We validated 100 randomly selected markers indicating their robustness and examined polymorphisms among nematode populations sampled from four different locations in Japan. These SSR markers will be a useful tool for understanding the population structure and transmission patterns of this parasitic nematode. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
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