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The oomycete vegetable pathogen Phytophthora capsici has shown remarkable adaptation to fungicides and new hosts. Like other members of this destructive genus, P. capsici has an explosive epidemiology, rapidly producing massive numbers of asexual spores on infected hosts. In addition, P. capsici can remain dormant for years as sexually recombined oospores, making it difficult to produce crops at infested sites, and allowing outcrossing populations to maintain significant genetic variation. Genome sequencing, development of a high-density genetic map, and integrative genomic or genetic characterization of P. capsici field isolates and intercross progeny revealed significant mitotic loss of heterozygosity (LOH) in diverse isolates. LOH was detected in clonally propagated field isolates and sexual progeny, cumulatively affecting >30% of the genome. LOH altered genotypes for more than 11,000 single-nucleotide variant sites and showed a strong association with changes in mating type and pathogenicity. Overall, it appears that LOH may provide a rapid mechanism for fixing alleles and may be an important component of adaptability for P. capsici.

Phytophthora ramorum and Phytophthora sojae are destructive plant pathogens. P. sojae has a narrow host range, whereas P. ramorum has a wide host range. A global proteomics comparison of the vegetative (mycelium) and infective (germinating cyst) life stages of P. sojae and P. ramorum was conducted to identify candidate proteins involved in host range, early infection, and vegetative growth. Sixty-two candidates for early infection, 26 candidates for vegetative growth, and numerous proteins that may be involved in defining host specificity were identified. In addition, common life stage proteomic trends between the organisms were observed. In mycelia, proteins involved in transport and metabolism of amino acids, carbohydrates, and other small molecules were up-regulated. In the germinating cysts, up-regulated proteins associated with lipid transport and metabolism, cytoskeleton, and protein synthesis were observed. It appears that the germinating cyst catabolizes lipid reserves through the beta-oxidation pathway to drive the extensive protein synthesis necessary to produce the germ tube and initiate infection. Once inside the host, the pathogen switches to vegetative growth in which energy is derived from glycolysis and utilized for synthesis of amino acids and other molecules that assist survival in the plant tissue.

Phytophthora capsici is an aggressive pathogen that is distributed worldwide with a broad host range infecting solanaceous, fabaceous, and cueurbitaceous crops. Over the past two decades, increased incidence of Phytophthora blight, particularly in eastern states, has threatened production of many vegetable crops. Cucumis melo L. (honeydew and muskmelon), although especially susceptible to fruit rot, is also highly susceptible to crown rot. Currently, little is known about host resistance to P. capsici in C. melo. To assess crown rot resistance in C. melo seedlings, 308 U.S. PIs, and two commercial cultivars (Athena and Dinero) were grown under greenhouse conditions. Seedlings with three to four true leaves were inoculated with a five-isolate zoospore suspension (1 x 104 zoospores per seedling) at the crown and monitored for 6 weeks. All the susceptible control plants of Athena died within 7 days post-inoculation. The majority of the PIs (281 of 308) were highly susceptible to crown rot and succumbed to the disease rapidly and had less than 20% of the plants survive. Several PIs (PI 181748, PI 182964, and PI 273438) succumbed to crown rot earlier than the susceptible melon cultivars. Eighty-seven PIs selected on the basis of the first screen were re-evaluated and of these PIs, 44 were less susceptible than cultivars Athena and Dinero. Twenty-five of the 87 PIs were evaluated again and of these six PI, greater than 80% of the plants survived in the two evaluations. Disease development was significantly slower on these PIs compared with the susceptible checks. High levels of resistance in S1 plants of P1420180, PI 176936, and PI 176940 were observed, which suggests that development of resistant germplasm for use in breeding programs can be accomplished. Further screening and careful selection within each of these PIs can provide a framework for the development of resistant germplasm for use in breeding programs. [ABSTRACT FROM AUTHOR]