21 results on '"Krishan K. Verma"'
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2. Slow-release boron fertilizer improves yield and nutritional profile of Beta vulgaris L. grown in Northeast China by increasing boron supply capacity
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Zhenzhen Wu, Xiaoyu Zhao, Jean Wan Hong Yong, Shafaque Sehar, Muhammad Faheem Adil, Muhammad Riaz, Krishan K. Verma, Meiyu Li, Jialu Huo, Songlin Yang, and Baiquan Song
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yield ,quality ,novel fertilizer ,sugar beet ,black soil ,albic soil ,Plant culture ,SB1-1110 - Abstract
The northeastern part of China is a traditional sugar beet cultivation area where the soils are classified generally as the black and albic soil types with low boron (B) availability. Boron fertilizer can increase soil B content and significantly improve crop yield and quality. At present, the effects of slow-release B fertilizer on beet root yield and quality remain unclear. Two sugar beet varieties KWS1197 and KWS0143 were selected as the research materials; and biologically evaluated with three dosage rates of 0, 15, and 30 kg ha-1 in two soil types. Results showed that slow-release B fertilizer (30 kg ha-1) improved sugar beet net photosynthetic rate (13.6%) and transpiration rate (9.8%), as well as enhanced dry matter accumulation and the transfer to underground parts (23.1%) for higher root yield (1.4 to 9.7% in black soil and 3.5-14.2% in albic soil). Specifically, boron fertilizer greatly increased root B accumulation, as evidenced by decreasing amino N and Na contents alongside increasing surose (Pol) content. Slow-release B fertilizer increased white sugar yield by 3.5 to 35.7% in black soil and 5.8 to 20.8% in albic soil. In conclusion, applying slow-release B fertilizer is an effective strategy to increase sugar beet yield and quality in northeast China, with a recommended application rate of 30 kg ha-1. These findings established a baseline for formulating effective and futristic fertilizer for sugar beet.
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- 2024
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3. Unlocking the role of silicon against biotic stress in plants
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Krishan K. Verma, Xiu-Peng Song, Qiang Liang, Hai-Rong Huang, Rajan Bhatt, Lin Xu, Gan-Lin Chen, and Yang-Rui Li
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pathogenic diseases ,disease tolerance efficiency and management ,crop productivity ,plant nutrition ,silicon ,Plant culture ,SB1-1110 - Abstract
The requirement for agricultural crops continues to enhance with the continuous growth of the human population globally. Plant pathogenic diseases outbreaks are enhancing and threatening food security and safety for the vulnerable in different regions worldwide. Silicon (Si) is considered a non-essential element for plant growth. It regulates the biological functions, plant development and productivity, and balance the defense mechanism in response to fungal, bacterial and pest attacks. The optimum crop yield can be achieved by applying Si in agricultural systems through different methods to replace or minimize the use of synthetic fertilizers. This approach can be effective on crop production during limited resources, extreme climates, pests and diseases, and environmental pollution. Silicon can be applied as foliar spray, priming of seeds, soil water irrigation, soil amendment and soilless medium (hydroponic) to enhance plant performance and stress tolerance capacity during stress conditions. This article summarized the effective roles of Si and the ability to perform in agroecosystems for better crop production, food security and safety for sustainable agriculture in the future.
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- 2024
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4. Biochar and its impact on soil profile and plant development
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Lin Xu, Kai-Chao Wu, Zhi-Nian Deng, Cheng-Mei Huang, Krishan K. Verma, Tian Pang, and Hai-Rong Huang
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Agroclimatic variables ,biochar ,plant growth and development ,soil nutrient ,abiotic stress mitigation ,Plant culture ,SB1-1110 ,Plant ecology ,QK900-989 - Abstract
Biochar has the potential to become a more promising carbon source with a broad range of applications in soil agroecosystems. The depletion of soil minerals is a big problem due to soil erosion and leaching of nutrients. Biochar is a soil conditioner used in crop production to improve soil profile, increase fertilizer use efficiency, plant growth and development, carbon sequestration, and reduce greenhouse gas emissions. It is persistent in the environment and retains water, nutrients, and contaminants. It can also be applied in environmental rehabilitation for remediating contaminated soil. Applied biochar significantly enhanced the nutrients in the rhizospheric soil and reduced the bioavailability and uptake of heavy metals. The enhancement of soil nutrient values was the major functional mechanism for enhancing plant protection and production. Overall, the results of this mini-review are significant because they provide the strategies and technological direction for using biochar in sustainable agricultural systems.
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- 2024
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5. Regulatory mechanisms of plant rhizobacteria on plants to the adaptation of adverse agroclimatic variables
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Krishan K. Verma, Abhishek Joshi, Xiu-Peng Song, Qiang Liang, Lin Xu, Hai-rong Huang, Kai-Chao Wu, Chandra Shekhar Seth, Jaya Arora, and Yang-Rui Li
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adverse agroclimatic conditions ,physiological and omic aspects ,plant responses ,plant hormones ,agricultural sustainability ,rhizobacteria ,Plant culture ,SB1-1110 - Abstract
The mutualistic plant rhizobacteria which improve plant development and productivity are known as plant growth-promoting rhizobacteria (PGPR). It is more significant due to their ability to help the plants in different ways. The main physiological responses, such as malondialdehyde, membrane stability index, relative leaf water content, photosynthetic leaf gas exchange, chlorophyll fluorescence efficiency of photosystem-II, and photosynthetic pigments are observed in plants during unfavorable environmental conditions. Plant rhizobacteria are one of the more crucial chemical messengers that mediate plant development in response to stressed conditions. The interaction of plant rhizobacteria with essential plant nutrition can enhance the agricultural sustainability of various plant genotypes or cultivars. Rhizobacterial inoculated plants induce biochemical variations resulting in increased stress resistance efficiency, defined as induced systemic resistance. Omic strategies revealed plant rhizobacteria inoculation caused the upregulation of stress-responsive genes—numerous recent approaches have been developed to protect plants from unfavorable environmental threats. The plant microbes and compounds they secrete constitute valuable biostimulants and play significant roles in regulating plant stress mechanisms. The present review summarized the recent developments in the functional characteristics and action mechanisms of plant rhizobacteria in sustaining the development and production of plants under unfavorable environmental conditions, with special attention on plant rhizobacteria-mediated physiological and molecular responses associated with stress-induced responses.
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- 2024
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6. Synergistic interactions of nanoparticles and plant growth promoting rhizobacteria enhancing soil-plant systems: a multigenerational perspective
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Krishan K. Verma, Abhishek Joshi, Xiu-Peng Song, Shraddha Singh, Aradhna Kumari, Jaya Arora, Santosh Kumar Singh, Manoj Kumar Solanki, Chandra Shekhar Seth, and Yang-Rui Li
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agro-ecological responses ,food security ,plant-microbiome ,soil amendment ,NPs ,PGPR ,Plant culture ,SB1-1110 - Abstract
Sustainable food security and safety are major concerns on a global scale, especially in developed nations. Adverse agroclimatic conditions affect the largest agricultural-producing areas, which reduces the production of crops. Achieving sustainable food safety is challenging because of several factors, such as soil flooding/waterlogging, ultraviolet (UV) rays, acidic/sodic soil, hazardous ions, low and high temperatures, and nutritional imbalances. Plant growth-promoting rhizobacteria (PGPR) are widely employed in in-vitro conditions because they are widely recognized as a more environmentally and sustainably friendly approach to increasing crop yield in contaminated and fertile soil. Conversely, the use of nanoparticles (NPs) as an amendment in the soil has recently been proposed as an economical way to enhance the texture of the soil and improving agricultural yields. Nowadays, various research experiments have combined or individually applied with the PGPR and NPs for balancing soil elements and crop yield in response to control and adverse situations, with the expectation that both additives might perform well together. According to several research findings, interactive applications significantly increase sustainable crop yields more than PGPR or NPs alone. The present review summarized the functional and mechanistic basis of the interactive role of PGPR and NPs. However, this article focused on the potential of the research direction to realize the possible interaction of PGPR and NPs at a large scale in the upcoming years.
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- 2024
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7. Nano-microplastic and agro-ecosystems: a mini-review
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Krishan K. Verma, Xiu-Peng Song, Lin Xu, Hai-Rong Huang, Qiang Liang, Chandra Shekhar Seth, and Yang-Rui Li
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degradation of plastic ,response of plants ,envirotoxicology ,soil contamination ,micro(nano)plastics ,pollution ,Plant culture ,SB1-1110 - Abstract
Plastics’ unavoidable and rampant usage causes their trash to be extensively dispersed in the atmosphere and land due to its numerous characteristics. Because of extensive plastic usage and increased manufacturing, there is insufficient recycling and a large accumulation of microplastics (MPs) in the environment. In addition to their wide availability in the soil and atmosphere, micro- and nanoplastics are becoming contaminants worldwide. Agro-ecosystem functioning and plant development are being negatively impacted in several ways by the contamination of the environment and farmland soils with MPs (
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- 2023
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8. Comparative transcriptome analysis of two sugarcane varieties in response to diazotrophic plant growth promoting endophyte Enterobacter roggenkampii ED5
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Dao-Jun Guo, Dong-Ping Li, Rajesh Kumar Singh, Pratiksha Singh, Krishan K. Verma, Anjney Sharma, Ying Qin, Qaisar Khan, Xiu-Peng Song, Mukesh K. Malviya, Yong-Xiu Xing, and Yang-Rui Li
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enterobacter roggenkampii ed5 ,endophyte ,n-fixation ,pgpb ,sugarcane ,transcriptome analysis ,Plant culture ,SB1-1110 ,Plant ecology ,QK900-989 - Abstract
Diazotrophic plant growth-promoting endophytic (DPGPEB) bacterium plays an important role in plant growth and development. However, the molecular mechanism of the interaction between DPGPEB and sugarcane is still less known. In this study, we used the RNA sequencing technology to compare the transcriptome of two sugarcane varieties GT11and B8 inoculated with Enterobacter roggenkampii ED5. The results showed that a total of 1905 differentially expressed genes (DEGs) were obtained in the ED5 inoculated plants as compared to the control for variety GT11, of which 812 were down-regulated and 1093 were up-regulated, respectively. Whereas, for variety B8, 6214 DEGs were detected in the ED5 inoculated plants as compared to the control, of which 1587 and 4627 of down-regulated and up-regulated, respectively. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses showed the DEGs were associated with starch and sucrose, nitrogen metabolism, biosynthesis of phenylpropanoid, phytohormone signal transduction, MAPK signaling pathway, secondary metabolic pathway, cell wall biogenesis, and photosynthesis. Additionally, the results of RNA-seq data were validated with qRT-PCR. In summary, these results provide valuable information about the transcriptomic changes of the two sugarcane varieties in response to E. roggenkampii ED5 for understanding the molecular mechanisms of sugarcane-bacteria interactions.
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- 2022
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9. Influence of nanosilicon on drought tolerance in plants: An overview
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Krishan K. Verma, Xiu-Peng Song, Munna Singh, Hai-Rong Huang, Rajan Bhatt, Lin Xu, Vinod Kumar, and Yang-Rui Li
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antioxidants ,reactive oxygen species ,water scarcity ,nanosilicon ,stress resistance efficiency ,plants ,Plant culture ,SB1-1110 - Abstract
Insufficient availability of water is a major global challenge that plants face and that can cause substantial losses in plant productivity and quality, followed by complete crop failure. Thus, it becomes imperative to improve crop cultivation/production in unsuitable agricultural fields and integrate modern agri-techniques and nanoparticles (NPs)-based approaches to extend appropriate aid to plants to handle adverse environmental variables. Nowadays, NPs are commonly used with biological systems because of their specific physicochemical characteristics, viz., size/dimension, density, and surface properties. The foliar/soil application of nanosilicon (nSi) has been shown to have a positive impact on plants through the regulation of physiological and biochemical responses and the synthesis of specific metabolites. Reactive oxygen species (ROS) are produced in plants in response to drought/water scarcity, which may enhance the ability for adaptation in plants/crops to withstand adverse surroundings. The functions of ROS influenced by nSi and water stress have been assessed widely. However, detailed information about their association with plants and stress is yet to be explored. Our review presents an update on recent developments regarding nSi and water stress in combination with ROS accumulation for sustainable agriculture and an eco-friendly environment.
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- 2022
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10. Nanosilicon: An approach for abiotic stress mitigation and sustainable agriculture
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Krishan K. Verma, Yuan Zeng, Xiu-Peng Song, Munna Singh, Kai-Chao Wu, Vishnu D. Rajput, and Yang-Rui Li
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leaf gas exchange ,enzymatic and non-enzymatic activities ,abiotic stress ,nano-silica ,stress relief ,environmental health ,Plant culture ,SB1-1110 - Abstract
Abiotic stresses cause extensive yield loss in various crops globally. Over the past few decades, the application of silicon nanoparticles (nSi) has emerged as an abiotic stress mitigator. The initial responses of plants are exemplified by the biogenesis of reactive oxygen species (ROS) to sustain cellular/organellar integrity, ensuring in vivo operation of metabolic functions by regulating physiological and biochemical pathways during stress conditions. Plants have evolved various antioxidative systems to balance/maintain the process of homeostasis via enzymatic and non-enzymatic activities that repair any losses. In an adverse environment, supplementation of Si mitigates the stress condition and improves the growth and development of plants. Its ameliorative effects are correlated with enhanced antioxidant enzymes activities, maintaining the equilibrium between ROS generation and reduction. However, a limited number of studies cover the role of nSi in abiotic stress conditions. This review addresses the accumulation and/or uptake of nSi in several crops, as well as its mode of action, which are linked with improved plant growth and tolerance capabilities, contributing to sustainable agriculture.
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- 2022
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11. Transcriptomic responses of Saccharum spontaneum roots in response to polyethylene glycol – 6000 stimulated drought stress
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Kai-Chao Wu, Cheng-Mei Huang, Krishan K. Verma, Zhi-Nian Deng, Hai-Rong Huang, Tian Pang, Hui-Qing Cao, Hai-Bin Luo, Sheng-Li Jiang, and Lin Xu
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gene ,transcriptome ,signal transduction ,drought stress ,Saccharum spontaneum ,Plant culture ,SB1-1110 - Abstract
Drought is the abiotic factor that adversely affects plant growth, development survival, and crop productivity, posing a substantial threat to sustainable agriculture worldwide, especially in warm and dry areas. However, the extent of damage depends upon the crop growth stage, severity and frequency of the stress. In general, the reproductive growth phase is more sensitive to stresses causing a substantial loss in crop productivity. Saccharum spontaneum (L.) is the most variable wild relative of sugarcane with potential for use in sugarcane crop improvement programs. In the present study addresses the transcriptomic analysis of drought stress imposed by polyethylene glycol-6000 (PED-6000; w/v- 25%) on the root tip tissues of S. spontaneum GX83-10. The analysis of microarrays of drought-stressed roots was performed at 0 (CK), 2 (T2), 4 (T4), 8 (T8) and 24 h (T24). The analyzed data were compared with the gene function annotations of four major databases, such as Nr, KOG/COG, Swiss-Prot, and KEGG, and a total of 62,988 single-gene information was obtained. The differently expressed genes of 56237 (T4), 59319 (T8), and 58583 (T24), among which CK obtained the most significant number of expressed genes (35920) as compared to T24, with a total of 53683 trend genes. Gene ontology (GO) and KEGG analysis were performed on the 6 important trends, and a total of 598 significant GO IDs and 42 significantly enriched metabolic pathways. Furthermore, these findings also aid in the selection of novel genes and promoters that can be used to potentially produce crop plants with enhanced stress resistance efficiency for sustainable agriculture.
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- 2022
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12. The Biosynthesis, Mechanism of Action, and Physiological Functions of Melatonin in Horticultural Plants: A Review
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Aradhna Kumari, Santosh Kumar Singh, Bhupendra Mathpal, Krishan K. Verma, Vinod Kumar Garg, Malini Bhattacharyya, and Rajan Bhatt
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melatonin ,biosynthesis ,physiological roles ,interaction with phytohormones ,horticultural crops ,Plant culture ,SB1-1110 - Abstract
Melatonin, a hormone known for its role in regulating sleep–wake cycles in mammals, has been found to have diverse functions in horticultural plants. In recent years, research has revealed the involvement of melatonin in various physiological processes in plants, like regulation of growth and development, stress tolerance, and antioxidant defense. Melatonin can augment seed germination, roots, shoot growth, and biomass accumulation in horticultural crops. It also performs a vital role in regulating vegetative and reproductive growth stages, floral transition, and leaf senescence. Melatonin improves stress tolerance in crops by regulating root architecture, nutrient uptake, and ion transport. Additionally, melatonin works like a broad-spectrum antioxidant by scavenging reactive oxygen species and enhancing antioxidant activity. The mechanism of action of melatonin in horticultural plants involves gene expressions, hormone signaling pathways, and antioxidant defense pathways. Melatonin also interacts with other plant growth regulators (PGRs), comprising auxins, cytokinins, and abscisic acid to coordinate various physiological processes in plants. Melatonin has evolved as a versatile chemical entity with diverse functions in horticultural plants, and its potential applications in crop production and stress management are increasingly being explored. This review aims to provide a comprehensive insight into the present state of knowledge about melatonin and its role in horticulturally important plants and identify avenues for further research and practical applications. Further study must be conducted to fully elucidate the mechanisms of melatonin action in crops and to outline effective strategies for its practical use in horticultural practices.
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- 2023
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13. Physio-morphological and biochemical mechanism of nitrogen use efficiency in sugarcane (Saccharum spp.) genotypes under different growth stages and nitrogen levels
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Muhammad Anas, Krishan K. Verma, Muhammad Riaz, Li Qiang, Fen Liao, Yang Liu, and Yang-Rui Li
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nitrogen ,morphology ,enzyme activities ,polynomial regression and pca ,Plant culture ,SB1-1110 ,Plant ecology ,QK900-989 - Abstract
Nitrogen is crucial for sugarcane crop to get economical sugar and biofuel throughout the world, and low nitrogen use efficiency is the main issue of sugarcane because of high nitrogen losses. In this experiment, physio-morphological, growth, and biochemical traits were observed for sugarcane genotypes (nitrogen inefficient-GT11 and efficient GXASF180-1-11) under 0.05 and 5 mMN levels at 5, 7, and 9 leaf stages. GXASF180-1-11 attained 46–58% and 16–23% more plant height and biomass than GT11, while photosynthesis and internal nitrogen use efficiency (iNUE) were 16 and 8% more at F2 fertilizer level, respectively. Highest key enzymes activity was showed in leaf whereas polynomial regression ranged between 0.53 and 0.98, 0.69 and 0.99 for iNUE and nitrogen use index. Principal component analysis explained 91.23–93.53% total variance across the stages. These results suggested that low nitrogen application rate with efficient germplasm may have the potential to improve iNUE for further cultivar development.
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- 2021
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14. Comparative analysis of protein and differential responses of defense-related gene and enzyme activity reveals the long-term molecular responses of sugarcane inoculated with Sporisorium scitamineum
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Pratiksha Singh, Rajesh Kumar Singh, Qi-Qi Song, Hai-Bi Li, Dao-Jun Guo, Mukesh K. Malviya, Krishan K. Verma, Xiu-Peng Song, Prakash Lakshmanan, Li-Tao Yang, and Yang-Rui Li
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biotic stress ,defense-related enzymes ,gene expression ,proteomics ,sporisorium scitamineum ,sugarcane ,Plant culture ,SB1-1110 ,Plant ecology ,QK900-989 - Abstract
Smut, the most important sugarcane fungal disease in China, is caused by Sporisorium scitamineum. Smut infection causes severe cane and sugar yield loss. Whole-plant resistance response is characterized by the expression of a large number of pathogenesis-related proteins and genes. Here, proteomic analysis by isobaric tag for relative and absolute quantification was conducted to identify differentially expressed proteins of two sugarcane varieties with contrasting resistance to smut, i.e. Yacheng71-374 (smut-susceptible) and GT29 (smut-resistant) following S. scitamineum infection. A total of 125 and 290 proteins were found differentially expressed after whip appearance in Yacheng71-374 and GT29 sugarcane varieties. Increased up-regulation of peroxidase and catalase and proteins involved in photosynthesis, calcium signaling, abscisic acid biosynthesis, and protein metabolism, were observed in GT29 as compared to Yacheng71-374, suggesting their potential involvement in smut defense mechanism(s) in sugarcane. The expression level of five important defense-related enzymes i.e. chitinase, glucanase, catalase, superoxide dismutase, and phenylalanine ammonia-lyase was analyzed by RT-qPCR. The expression of these enzymes was found enhanced considerably in GT29 as compared to Yacheng71-374 for up to six months following pathogen infection. These results provide new molecular insights into long-term responses of sugarcane to smut infection, a much over-looked aspect of sugarcane smut disease.
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- 2021
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15. Nanofertilizer Possibilities for Healthy Soil, Water, and Food in Future: An Overview
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Krishan K. Verma, Xiu-Peng Song, Abhishek Joshi, Vishnu D. Rajput, Munna Singh, Anjney Sharma, Rajesh Kumar Singh, Dong-Mei Li, Jaya Arora, Tatiana Minkina, and Yang-Rui Li
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abiotic stress ,bioavailability ,environment ,growth-production ,nanoparticles ,plant nutrition ,Plant culture ,SB1-1110 - Abstract
Conventional fertilizers and pesticides are not sustainable for multiple reasons, including high delivery and usage inefficiency, considerable energy, and water inputs with adverse impact on the agroecosystem. Achieving and maintaining optimal food security is a global task that initiates agricultural approaches to be revolutionized effectively on time, as adversities in climate change, population growth, and loss of arable land may increase. Recent approaches based on nanotechnology may improve in vivo nutrient delivery to ensure the distribution of nutrients precisely, as nanoengineered particles may improve crop growth and productivity. The underlying mechanistic processes are yet to be unlayered because in coming years, the major task may be to develop novel and efficient nutrient uses in agriculture with nutrient use efficiency (NUE) to acquire optimal crop yield with ecological biodiversity, sustainable agricultural production, and agricultural socio-economy. This study highlights the potential of nanofertilizers in agricultural crops for improved plant performance productivity in case subjected to abiotic stress conditions.
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- 2022
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16. Transcriptome Analysis Reveals a Gene Expression Pattern That Contributes to Sugarcane Bud Propagation Induced by Indole-3-Butyric Acid
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Lin Xu, Zhi-Nian Deng, Kai-Chao Wu, Mukesh Kumar Malviya, Manoj Kumar Solanki, Krishan K. Verma, Tian Pang, Yi-Jie Li, Xiao-Yan Liu, Brijendra Kumar Kashyap, Eldessoky S. Dessoky, Wei-Zan Wang, and Hai-Rong Huang
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IBA ,single-bud seed ,sugarcane ,root ,transcriptome ,Plant culture ,SB1-1110 - Abstract
Sugarcane is a cash crop that plays an integral part in the sugar industry. The Sustainable Sugarcane Initiative (SSI) has been adopted globally, ensuring enough and aiming for more yield, helping increase disease-free sugarcane cultivation. Single-bud seeds could be the best approach for sugarcane cultivation. Indole-3-butyric acid (IBA) is a rooting agent utilized significantly in seedling propagation. Greenhouse experiment results discovered the significant growth promotion in sugarcane seedlings and accumulation of plant hormones at 100 ppm IBA. Next, we performed transcriptomic analysis of sugarcane buds using RNA sequencing and compared their gene expression during root development due to affect of IBA (100 ppm). A total of 113,475 unigenes were annotated with an average length of 836 bp (N50 = 1,536). The comparative RNA-seq study between the control (CK) and IBA-treated (T) buds showed significant differentially expressed unigenes (494 upregulated and 2086 downregulated). The IBA influenced major biological processes including metabolic process, the cellular process, and single-organism process. For cellular component category, cell, cell part, organelle, membrane, and organelle part were mainly affected. In addition, catalytic activity and binding were primarily affected in the molecular function categories. Furthermore, the expression of genes related to plant hormones and signaling pathways was analyzed by qRT-PCR, which was consistent with the RNA-seq expression profile. This study provides new insights into the IBA response to the bud sprouting in sugarcane based on RNA sequencing, and generated information could help further research on breeding improvement of sugarcane.
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- 2022
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17. High-Throughput Sequencing-Based Analysis of Rhizosphere and Diazotrophic Bacterial Diversity Among Wild Progenitor and Closely Related Species of Sugarcane (Saccharum spp. Inter-Specific Hybrids)
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Mukesh Kumar Malviya, Chang-Ning Li, Prakash Lakshmanan, Manoj Kumar Solanki, Zhen Wang, Anjali Chandrol Solanki, Qian Nong, Krishan K. Verma, Rajesh Kumar Singh, Pratiksha Singh, Anjney Sharma, Dao-Jun Guo, Eldessoky S. Dessoky, Xiu-Peng Song, and Yang-Rui Li
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rhizosphere soil ,sugarcane ,nifH ,16S rRNA ,diazotroph diversity ,Plant culture ,SB1-1110 - Abstract
Considering the significant role of genetic background in plant-microbe interactions and that most crop rhizospheric microbial research was focused on cultivars, understanding the diversity of root-associated microbiomes in wild progenitors and closely related crossable species may help to breed better cultivars. This study is aimed to fill a critical knowledge gap on rhizosphere and diazotroph bacterial diversity in the wild progenitors of sugarcane, the essential sugar and the second largest bioenergy crop globally. Using a high-throughput sequencing (HTS) platform, we studied the rhizosphere and diazotroph bacterial community of Saccharum officinarum L. cv. Badila (BRS), Saccharum barberi (S. barberi) Jesw. cv Pansahi (PRS), Saccharum robustum [S. robustum; (RRS), Saccharum spontaneum (S. spontaneum); SRS], and Saccharum sinense (S. sinense) Roxb. cv Uba (URS) by sequencing their 16S rRNA and nifH genes. HTS results revealed that a total of 6,202 bacteria-specific operational taxonomic units (OTUs) were identified, that were distributed as 107 bacterial groups. Out of that, 31 rhizobacterial families are commonly spread in all five species. With respect to nifH gene, S. barberi and S. spontaneum recorded the highest and lowest number of OTUs, respectively. These results were validated by quantitative PCR analysis of both genes. A total of 1,099 OTUs were identified for diazotrophs with a core microbiome of 9 families distributed among all the sugarcane species. The core microbiomes were spread across 20 genera. The increased microbial diversity in the rhizosphere was mainly due to soil physiochemical properties. Most of the genera of rhizobacteria and diazotrophs showed a positive correlation, and few genera negatively correlated with the soil properties. The results showed that sizeable rhizospheric diversity exists across progenitors and close relatives. Still, incidentally, the rhizosphere microbial abundance of progenitors of modern sugarcane was at the lower end of the spectrum, indicating the prospect of Saccharum species introgression breeding may further improve nutrient use and disease and stress tolerance of commercial sugarcane. The considerable variation for rhizosphere microbiome seen in Saccharum species also provides a knowledge base and an experimental system for studying the evolution of rhizobacteria-host plant association during crop domestication.
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- 2022
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18. Potential of Suaeda nudiflora and Suaeda fruticosa to Adapt to High Salinity Conditions
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Abhishek Joshi, Vishnu D. Rajput, Krishan K. Verma, Tatiana Minkina, Karen Ghazaryan, and Jaya Arora
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antioxidants ,adaptive mechanism ,halophytes ,phytoremediation ,soil salinity ,Plant culture ,SB1-1110 - Abstract
The deposition of salts in soil seems likely to become a significant barrier for plant development and growth. Halophytes that flourish in naturally saline habitats may sustain extreme salt levels by adopting different acclimatory traits. Insight into such acclimatory features can be useful for devising salt-resilient crops and the reclamation of saline soil. Therefore, salinity-induced responses were studied in two halophytes, i.e., Suaeda nudiflora and Suaeda fruticosa, at a high soil salinity level (ECe 65) to explore their possible tolerance mechanisms in their natural habitat. Samples of different tissues were collected from both Suaeda species for the determination of physio-biochemical attributes, i.e., ionic (Na+, K+, Ca2+, Cl−) content, osmo-protective compounds (proline, soluble sugars, soluble proteins), total phenolic content, and antioxidant components. Heavy metal composition and accumulation in soil and plant samples were also assessed, respectively. Fourier transform infrared spectroscopy (FTIR) analysis was conducted to explore cellular metabolite pools with respect to high salinity. The results showed that both species considerably adjusted the above-mentioned physio-biochemical attributes to resist high salinity, demonstrated by quantitative differences in their above-ground tissues. The FTIR profiles confirmed the plants’ differential responses in terms of variability in lipids, proteins, carbohydrates, and cell wall constituents. The high capacity for Na+ and Cl− accumulation and considerable bioaccumulation factor (BAF) values for metals, mainly Fe and Zn, validate the importance of both Suaeda species as phytodesalination plants and their potential use in the phytoremediation of salt- and metal-polluted soils.
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- 2023
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19. Differential Protein Expression Analysis of Two Sugarcane Varieties in Response to Diazotrophic Plant Growth-Promoting Endophyte Enterobacter roggenkampii ED5
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Dao-Jun Guo, Dong-Ping Li, Rajesh Kumar Singh, Pratiksha Singh, Anjney Sharma, Krishan K. Verma, Ying Qin, Qaisar Khan, Zhen Lu, Mukesh K. Malviya, Xiu-Peng Song, Yong-Xiu Xing, and Yang-Rui Li
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Enterobacter roggenkampii ED5 ,endophyte ,N-fixation ,PGP ,proteome ,sugarcane ,Plant culture ,SB1-1110 - Abstract
Plant endophytic bacteria have many vital roles in plant growth promotion (PGP), such as nitrogen (N) fixation and resistance to biotic and abiotic stresses. In this study, the seedlings of sugarcane varieties B8 (requires a low concentration of nitrogen for growth) and GT11 (requires a high concentration of nitrogen for growth) were inoculated with endophytic diazotroph Enterobacter roggenkampii ED5, which exhibits multiple PGP traits, isolated from sugarcane roots. The results showed that the inoculation with E. roggenkampii ED5 promoted the growth of plant significantly in both sugarcane varieties. 15N detection at 60 days post-inoculation proved that the inoculation with strain ED5 increased the total nitrogen concentration in the leaf and root than control in both sugarcane varieties, which was higher in B8. Biochemical parameters and phytohormones in leaf were analyzed at 30 and 60 days after the inoculation. The results showed that the inoculation with E. roggenkampii ED5 improved the activities of superoxide dismutase (SOD), catalase (CAT), NADH-glutamate dehydrogenase (NADH-GDH), glutamine synthetase (GS), and endo-β-1,4-glucanase, and the contents of proline and indole acetic acid (IAA) in leaf, and it was generally more significant in B8 than in GT11. Tandem Mass Tags (TMT) labeling and liquid chromatography-tandem mass spectrometry (LC-MS/MS) were used to perform comparative proteomic analysis in the sugarcane leaves at 30 days after inoculation with strain ED5. A total of 27,508 proteins were detected, and 378 differentially expressed proteins (DEPs) were found in the treated sugarcane variety B8 (BE) as compared to control (BC), of which 244 were upregulated and 134 were downregulated. In contrast, a total of 177 DEPs were identified in the treated sugarcane variety GT11 (GE) as compared to control (GC), of which 103 were upregulated and 74 were downregulated. The DEPs were associated with nitrogen metabolism, photosynthesis, starch, sucrose metabolism, response to oxidative stress, hydrolase activity, oxidative phosphorylation, glutathione metabolism, phenylpropanoid metabolic process, and response to stresses in Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) database. To the best of our knowledge, this is the first proteomic approach to investigate the molecular basis of the interaction between N-fixing endophytic strain E. roggenkampii ED5 and sugarcane.
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- 2021
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- View/download PDF
20. Physio-morphological and biochemical mechanism of nitrogen use efficiency in sugarcane (Saccharum spp.) genotypes under different growth stages and nitrogen levels
- Author
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Yang Liu, Yang-Rui Li, Muhammad Riaz, Fen Liao, Krishan K. Verma, Muhammad Anas, and Li Qiang
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biology ,Low nitrogen ,chemistry.chemical_element ,Plant culture ,Plant Science ,biology.organism_classification ,Nitrogen ,nitrogen ,SB1-1110 ,Saccharum ,Crop ,chemistry ,Agronomy ,enzyme activities ,Biofuel ,High nitrogen ,morphology ,polynomial regression and pca ,QK900-989 ,Sugar ,Plant ecology ,Ecology, Evolution, Behavior and Systematics ,Biochemical mechanism - Abstract
Nitrogen is crucial for sugarcane crop to get economical sugar and biofuel throughout the world, and low nitrogen use efficiency is the main issue of sugarcane because of high nitrogen losses. In this experiment, physio-morphological, growth, and biochemical traits were observed for sugarcane genotypes (nitrogen inefficient-GT11 and efficient GXASF180-1-11) under 0.05 and 5 mMN levels at 5, 7, and 9 leaf stages. GXASF180-1-11 attained 46–58% and 16–23% more plant height and biomass than GT11, while photosynthesis and internal nitrogen use efficiency (iNUE) were 16 and 8% more at F2 fertilizer level, respectively. Highest key enzymes activity was showed in leaf whereas polynomial regression ranged between 0.53 and 0.98, 0.69 and 0.99 for iNUE and nitrogen use index. Principal component analysis explained 91.23–93.53% total variance across the stages. These results suggested that low nitrogen application rate with efficient germplasm may have the potential to improve iNUE for further cultivar development.
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- 2021
21. Comparative analysis of protein and differential responses of defense-related gene and enzyme activity reveals the long-term molecular responses of sugarcane inoculated with Sporisorium scitamineum
- Author
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Rajesh Kumar Singh, Krishan K. Verma, Li-Tao Yang, Yang-Rui Li, Hai-Bi Li, Dao-Jun Guo, Qi-Qi Song, Mukesh Kumar Malviya, Prakash Lakshmanan, Pratiksha Singh, and Xiu-Peng Song
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0106 biological sciences ,0301 basic medicine ,Plant Science ,01 natural sciences ,SB1-1110 ,Microbiology ,03 medical and health sciences ,biotic stress ,proteomics ,sporisorium scitamineum ,Sporisorium ,sugarcane ,Gene expression ,QK900-989 ,Related gene ,Cane ,Plant ecology ,Ecology, Evolution, Behavior and Systematics ,biology ,Inoculation ,Plant culture ,food and beverages ,Biotic stress ,biology.organism_classification ,Enzyme assay ,030104 developmental biology ,defense-related enzymes ,Smut ,gene expression ,biology.protein ,010606 plant biology & botany - Abstract
Smut, the most important sugarcane fungal disease in China, is caused by Sporisorium scitamineum. Smut infection causes severe cane and sugar yield loss. Whole-plant resistance response is characterized by the expression of a large number of pathogenesis-related proteins and genes. Here, proteomic analysis by isobaric tag for relative and absolute quantification was conducted to identify differentially expressed proteins of two sugarcane varieties with contrasting resistance to smut, i.e. Yacheng71-374 (smut-susceptible) and GT29 (smut-resistant) following S. scitamineum infection. A total of 125 and 290 proteins were found differentially expressed after whip appearance in Yacheng71-374 and GT29 sugarcane varieties. Increased up-regulation of peroxidase and catalase and proteins involved in photosynthesis, calcium signaling, abscisic acid biosynthesis, and protein metabolism, were observed in GT29 as compared to Yacheng71-374, suggesting their potential involvement in smut defense mechanism(s) in sugarcane. The expression level of five important defense-related enzymes i.e. chitinase, glucanase, catalase, superoxide dismutase, and phenylalanine ammonia-lyase was analyzed by RT-qPCR. The expression of these enzymes was found enhanced considerably in GT29 as compared to Yacheng71-374 for up to six months following pathogen infection. These results provide new molecular insights into long-term responses of sugarcane to smut infection, a much over-looked aspect of sugarcane smut disease.
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- 2021
- Full Text
- View/download PDF
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