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Plastid DNA sequences have been widely used by systematists for reconstructing plant phylogenies. The utility of any DNA region for phylogenetic analysis is determined by ease of amplification and sequencing, confidence of assessment in phylogenetic character alignment, and by variability across broad taxon sampling. Often, a compromise must be made between using relatively highly conserved coding regions or highly variable introns and intergenic spacers. Analyses of a combination of these types of DNA regions yield phylogenetic structure at various levels of a tree (i.e., along the spine and at the tips of the branches). Here, we demonstrate the phylogenetic utility of a heretofore unused portion of a plastid protein-coding gene, hypothetical chloroplast open reading frame 1 ( ycf1), in orchids. All portions of ycf1 examined are highly variable, yet alignable across Orchidaceae, and are phylogenetically informative at the level of species. In Orchidaceae, ycf1 is more variable than matK both in total number of parsimony informative characters and in percent variability. The nrITS region is more variable than ycf1, but is more difficult to align. Although we only demonstrate the phylogenetic utility of ycf1 in orchids, it is likely to be similarly useful among other plant taxa. [ABSTRACT FROM AUTHOR]

Subtribe Oncidiinae comprises a vegetatively heterogeneous assemblage of species that has persistently been incapable of organization. Anatomy was considered to be a possible means to resolve the perplexity of relationships amongst the constituent taxa. The consistent occurrence of a foliar hypodermis, homogeneous mesophyll, conical silica bodies in stegmata, and ubiquitous fibre bundles in leaves provides a matrix for linking the taxa, as do the parenchymatous pith and O-thickened endodermal cell walls in roots. However, the strict consensus of the 40 genera studied was completely unresolved, suggesting that vegetative characters alone are insufficient to assess the relationships amongst these taxa, a conclusion also reached for the remainder of Maxillarieae. © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society, 2006, 152, 91–107. [ABSTRACT FROM AUTHOR]

The vegetative anatomy and morphology of 142 species of the angraecoid orchids (Angraecinae + Aerangidinae) and 18 species of Aeridinae were examined using light and scanning electron microscopy. Leafless members of Vandeae were of particular interest because of their unique growth habit. Leafy and leafless members of Angraecinae and Aerangidinae were examined and compared with specimens of Aeridinae. Vandeae were homogeneous in both leaf and root anatomy. A foliar hypodermis and fibre bundles were generally absent. Stegmata with spherical silica bodies were found associated with sclerenchyma and restricted to leaves in almost all specimens examined. Distinct inner tangential wall thickenings of the endovelamen occurred in several vandaceous genera. Exodermal proliferations and aeration units commonly occurred in both leafy and leafless Vandeae. Cladistic analyses of Angraecinae and Aerangidinae with members of Aeridinae and Polystachyinae as outgroups using 26 structural characters resulted in 20 000+ equally parsimonious trees. Vandeae formed the only well-supported clade in bootstrap analyses and were characterized by having a monopodial growth habit, spherical stegmata, loss of mucilage, and loss of tilosomes. © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society, 2006, 151, 165–218. [ABSTRACT FROM AUTHOR]