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We present the first-of-its-kind coupling of a continuum full-f gyrokinetic turbulence model with a 6D continuum model for kinetic neutrals, carried out using the Gkeyll code. Our objective is to improve the first-principles understanding of the role of neutrals in plasma fueling, detachment, and their interaction with edge plasma profiles and turbulence statistics. Our model includes only atomic hydrogen and incorporates electron-impact ionization, charge exchange, and wall recycling. These features have been successfully verified with analytical predictions and benchmarked with the DEGAS2 Monte Carlo neutral code. We carry out simulations for a scrape-off layer (SOL) with simplified geometry and NSTX parameters. We compare these results to a baseline simulation without neutrals and find that neutral interactions reduce the normalized density fluctuation levels and associated skewness and kurtosis, while increasing auto-correlation times. A flatter density profile is also observed, similar to the SOL density shoulder formation in experimental scenarios with high fueling.

The effect of varying magnetic shear on scrape-off layer turbulence and profiles is studied via electromagnetic gyrokinetic simulations of a helical scrape-off layer model. We develop a model helical geometry with magnetic shear and a corresponding field-aligned coordinate system, which is used for simulations with the Gkeyll code. We find that perpendicular transport is reduced in cases with stronger shear, resulting in higher peak particle and heat fluxes to the endplates. Electromagnetic effects slightly increase transport in strong shear cases., Comment: 11 pages, 9 figures. arXiv admin note: text overlap with arXiv:2112.06880

We demonstrate that cross-field transport in the scrape-off layer (SOL) can be moderately increased by electromagnetic effects in high-beta regimes, resulting in a broader electron heat-flux width on the endplates. This conclusion is taken from full-$f$ electromagnetic gyrokinetic simulations of a helical SOL model that roughly approximates the SOL of the National Spherical Torus Experiment (NSTX). The simulations have been performed with the Gkeyll code, which recently became the first code to demonstrate the capability to simulate electromagnetic gyrokinetic turbulence on open magnetic field lines with sheath boundary conditions. We scan the source rate and thus $\beta$ so that the normalized pressure gradient (the MHD ballooning parameter $\alpha \propto \partial \beta / \partial r \propto \beta / L_p$) is scanned over an experimentally-relevant range, $\alpha = 0.3-1.5$. While there is little change in the pressure gradient scale length $L_p$ near the midplane as beta is increased, a 10% increase in cross-field transport near the midplane results in an increase in the electron heat-flux width $\lambda_q$ and a 25% reduction of the peak electron heat flux to the endplates., Comment: 13 pages, 10 figures

We present an energy-conserving discontinuous Galerkin scheme for the full-$f$ electromagnetic gyrokinetic system in the long-wavelength limit. We use the symplectic formulation and solve directly for $\partial A_\parallel/\partial t$, the inductive component of the parallel electric field, using a generalized Ohm's law derived directly from the gyrokinetic equation. Linear benchmarks are performed to verify the implementation and show that the scheme avoids the Amp\`ere cancellation problem. We perform a nonlinear electromagnetic simulation in a helical open-field-line system as a rough model of the tokamak scrape-off layer using parameters from the National Spherical Torus Experiment (NSTX). This is the first published nonlinear electromagnetic gyrokinetic simulation on open field lines. Comparisons are made to a corresponding electrostatic simulation., Comment: 38 pages, 11 figures

3D2V continuum gyrokinetic simulations of electrostatic plasma turbulence in a straight, open-field-line geometry have been performed using the full-$f$ discontinuous-Galerkin code Gkeyll. These simulations include the basic elements of a fusion-device scrape-off layer: localized sources to model plasma outflow from the core, cross-field turbulent transport, parallel flow along magnetic field lines, and parallel losses at the limiter or divertor with sheath model boundary conditions. The set of sheath boundary conditions used in the model allows currents to flow through the walls. In addition to details of the numerical approach, results from numerical simulations of turbulence in the Large Plasma Device (LAPD), a linear device featuring straight magnetic field lines, are presented., Comment: 22 pages, 7 figures, submitted to J. Plasma Phys

We are developing a new continuum gyrokinetic code, Gkeyll, for use in edge plasma simulations, and here present initial simulations of turbulence on open field lines with model sheath boundary conditions. The code implements an energy conserving discontinuous Galerkin scheme, applicable to a general class of Hamiltonian equations. Several applications to test problems have been done, including a calculation of the parallel heat-flux on divertor plates resulting from an ELM crash in JET, for a 1x/1v SOL scenario explored previously, where the ELM is modeled as a time-dependent intense upstream source. Here we present initial simulations of turbulence on open field lines in the LAPD linear plasma device. We have also done simulations in a helical open-field-line geometry. While various simplifications have been made at present, this still includes some of the key physics of SOL turbulence, such as bad-curvature drive for instabilities and rapid parallel losses with sheath boundary conditions. This is useful for demonstrating the overall feasibility of this approach and for initial physics studies of SOL turbulence. We developed a novel version of DG that uses Maxwellian-weighted basis functions while still preserving exact particle and energy conservation. The Maxwellian-weighted DG method achieves the same error with 4 times less computational cost in 1v, or 16 times lower cost in the 2 velocity dimensions of gyrokinetics (assuming memory bandwidth is the limiting factor)., Comment: Paper accepted for 26th IAEA Fusion Energy Conference (2016, Kyoto, Japan) proceedings

A scaling theory of long-wavelength electrostatic turbulence in a magnetised, weakly collisional plasma (e.g., ITG turbulence) is proposed, with account taken both of the nonlinear advection of the perturbed particle distribution by fluctuating ExB flows and of its phase mixing, which is caused by the streaming of the particles along the mean magnetic field and, in a linear problem, would lead to Landau damping. It is found that it is possible to construct a consistent theory in which very little free energy leaks into high velocity moments of the distribution function, rendering the turbulent cascade in the energetically relevant part of the wave-number space essentially fluid-like. The velocity-space spectra of free energy expressed in terms of Hermite-moment orders are steep power laws and so the free-energy content of the phase space does not diverge at infinitesimal collisionality (while it does for a linear problem); collisional heating due to long-wavelength perturbations vanishes in this limit (also in contrast with the linear problem, in which it occurs at the finite rate equal to the Landau-damping rate). The ability of the free energy to stay in the low velocity moments of the distribution function is facilitated by the "anti-phase-mixing" effect, whose presence in the nonlinear system is due to the stochastic version of the plasma echo (the advecting velocity couples the phase-mixing and anti-phase-mixing perturbations). The partitioning of the wave-number space between the (energetically dominant) region where this is the case and the region where linear phase mixing wins its competition with nonlinear advection is governed by the "critical balance" between linear and nonlinear timescales (which for high Hermite moments splits into two thresholds, one demarcating the wave-number region where phase mixing predominates, the other where plasma echo does)., Comment: 45 pages (single-column), 3 figures, replaced with version published in JPP

Nonlinear energy transfer and dissipation in Alfv\'en wave turbulence are analyzed in the first gyrokinetic simulation spanning all scales from the tail of the MHD range to the electron gyroradius scale. For typical solar wind parameters at 1 AU, about 30% of the nonlinear energy transfer close to the electron gyroradius scale is mediated by modes in the tail of the MHD cascade. Collisional dissipation occurs across the entire kinetic range $k_\perp\rho_i\gtrsim 1$. Both mechanisms thus act on multiple coupled scales, which have to be retained for a comprehensive picture of the dissipation range in Alfv\'enic turbulence., Comment: Made several improvements to figures and text suggested by referees

An electrostatic gyrokinetic-based model is applied to simulate parallel plasma transport in the scrape-off layer to a divertor plate. The authors focus on a test problem that has been studied previously, using parameters chosen to model a heat pulse driven by an edge-localized mode (ELM) in JET. Previous work has used direct particle-in-cell equations with full dynamics, or Vlasov or fluid equations with only parallel dynamics. With the use of the gyrokinetic quasineutrality equation and logical sheath boundary conditions, spatial and temporal resolution requirements are no longer set by the electron Debye length and plasma frequency, respectively. This test problem also helps illustrate some of the physics contained in the Hamiltonian form of the gyrokinetic equations and some of the numerical challenges in developing an edge gyrokinetic code., Comment: 10 pages, 4 figures

The Large Eddy Simulation (LES) approach - solving numerically the large scales of a turbulent system and accounting for the small-scale influence through a model - is applied to nonlinear gyrokinetic systems that are driven by a number of different microinstabilities. Comparisons between modeled, lower resolution, and higher resolution simulations are performed for an experimental measurable quantity, the electron density fluctuation spectrum. Moreover, the validation and applicability of LES is demonstrated through a series of diagnostics based on the free energetics of the system., Comment: 14 pages, 9 figures

A unique method of driving Alfvenic turbulence via an oscillating Langevin antenna is presented. This method of driving is motivated by a desire to inject energy into a finite domain numerical simulation in a manner that models the nonlinear transfer of energy from fluctuations in the turbulent cascade at scales larger than the simulation domain.. The oscillating Langevin antenna is shown to capture the essential features of the larger scale turbulence and efficiently couple to the plasma, generating steady-state turbulence within one characteristic turnaround time. The antenna is also sufficiently flexible to explore both strong and weak regimes of Alfvenic plasma turbulence., Comment: 33 pages, 10 figures, accepted for publication in Computer Physics Communications

One metric for comparing confinement properties of different magnetic fusion energy configurations is the linear critical gradient of drift wave modes. The critical gradient scale length determines the ratio of the core to pedestal temperature when a plasma is limited to marginal stability in the plasma core. The gyrokinetic turbulence code GS2 was used to calculate critical temperature gradients for the linear, collisionless ion temperature gradient (ITG) mode in the National Compact Stellarator Experiment (NCSX) and a prototypical shaped tokamak, based on the profiles of a JET H-mode shot and the stronger shaping of ARIES-AT. While a concern was that the narrow cross section of NCSX at some toroidal locations would result in steep gradients that drive instabilities more easily, it is found that other stabilizing effects of the stellarator configuration offset this so that the normalized critical gradients for NCSX are competitive with or even better than for the tokamak. For the adiabatic ITG mode, NCSX and the tokamak had similar critical gradients, though beyond marginal stability, NCSX had larger growth rates. However, for the kinetic ITG mode, NCSX had a higher critical gradient and lower growth rates until a/L_T is approximately 1.5 times a/L_{T,crit}, when it surpassed the tokamak's. A discussion of the results presented with respect to a/L_T vs. R/L_T is included., Comment: Accepted to Physics of Plasmas. 8 pages, 16 figures

The gyrokinetic turbulence code GS2 was used to investigate the effects of plasma beta on linear, collisionless ion temperature gradient (ITG) modes and trapped electron modes (TEM) in National Compact Stellarator Experiment (NCSX) geometry. Plasma beta affects stability in two ways: through the equilibrium and through magnetic fluctuations. The first was studied here by comparing ITG and TEM stability in two NCSX equilibria of differing beta values, revealing that the high beta equilibrium was marginally more stable than the low beta equilibrium in the adiabatic-electron ITG mode case. However, the high beta case had a lower kinetic-electron ITG mode critical gradient. Electrostatic and electromagnetic ITG and TEM mode growth rate dependencies on temperature gradient and density gradient were qualitatively similar. The second beta effect is demonstrated via electromagnetic ITG growth rates' dependency on GS2's beta input parameter. A linear benchmark with gyrokinetic codes GENE and GKV-X is also presented., Comment: Submitted to Physics of Plasmas. 9 pages, 27 figures

The nonlinear gyrokinetic code GS2 has been extended to treat non-axisymmetric stellarator geometry. Electromagnetic perturbations and multiple trapped particle regions are allowed. Here, linear, collisionless, electrostatic simulations of the quasi-axisymmetric, three-field period National Compact Stellarator Experiment (NCSX) design QAS3-C82 have been successfully benchmarked against the eigenvalue code FULL. Quantitatively, the linear stability calculations of GS2 and FULL agree to within ~10%., Comment: Submitted to Physics of Plasmas. 9 pages, 14 figures

The first nonlinear gyrokinetic simulations of electron internal transport barriers (e-ITBs) in the National Spherical Torus Experiment show that reversed magnetic shear can suppress thermal transport by increasing the nonlinear critical gradient for electron-temperature-gradient-driven turbulence to three times its linear critical value. An interesting feature of this turbulence is nonlinearly driven off-midplane radial streamers. This work reinforces the experimental observation that magnetic shear is likely an effective way of triggering and sustaining e-ITBs in magnetic fusion devices., Comment: 4 pages, 5 figures

Direct coupling between a transport solver and local, nonlinear gyrokinetic calculations using the multiscale gyrokinetic code TRINITY [M. Barnes, Ph.D. thesis, arxiv:0901.2868] is described. The coupling of the microscopic and macroscopic physics is done within the framework of multiscale gyrokinetic theory, of which we present the assumptions and key results. An assumption of scale separation in space and time allows for the simulation of turbulence in small regions of the space-time grid, which are embedded in a coarse grid on which the transport equations are implicitly evolved. This leads to a reduction in computational expense of several orders of magnitude, making first-principles simulations of the full fusion device volume over the confinement time feasible on current computing resources. Numerical results from TRINITY simulations are presented and compared with experimental data from JET and ASDEX Upgrade plasmas., Comment: 12 pages, 13 figures, invited paper for 2009 APS-DPP meeting, submitted to Phys. Plasmas

A set of key properties for an ideal dissipation scheme in gyrokinetic simulations is proposed, and implementation of a model collision operator satisfying these properties is described. This operator is based on the exact linearized test-particle collision operator, with approximations to the field-particle terms that preserve conservation laws and an H-Theorem. It includes energy diffusion, pitch-angle scattering, and finite Larmor radius effects corresponding to classical (real-space) diffusion. The numerical implementation in the continuum gyrokinetic code GS2 is fully implicit and guarantees exact satisfaction of conservation properties. Numerical results are presented showing that the correct physics is captured over the entire range of collisionalities, from the collisionless to the strongly collisional regimes, without recourse to artificial dissipation., Comment: 13 pages, 8 figures, submitted to Physics of Plasmas; typos fixed

This paper describes a conceptual framework for understanding kinetic plasma turbulence as a generalized form of energy cascade in phase space. It is emphasized that conversion of turbulent energy into thermodynamic heat is only achievable in the presence of some (however small) degree of collisionality. The smallness of the collision rate is compensated by the emergence of small-scale structure in the velocity space. For gyrokinetic turbulence, a nonlinear perpendicular phase mixing mechanism is identified and described as a turbulent cascade of entropy fluctuations simultaneously occurring at spatial scales smaller than the ion gyroscale and in velocity space. Scaling relations for the resulting fluctuation spectra are derived. An estimate for the collisional cutoff is provided. The importance of adequately modeling and resolving collisions in gyrokinetic simulations is biefly discussed, as well as the relevance of these results to understanding the dissipation-range turbulence in the solar wind and the electrostatic microturbulence in fusion plasmas., Comment: iop revtex style, 14 pages, 1 figure; submitted to PPCF; invited talk for EPS Conference on Plasma Physics, Crete, June 2008; Replaced to match published version

An efficient, iterative semi-implicit (SI) numerical method for the time integration of stiff wave systems is presented. Physics-based assumptions are used to derive a convergent iterative formulation of the SI scheme which enables the monitoring and control of the error introduced by the SI operator. This iteration essentially turns a semi-implicit method into a fully implicit method. Accuracy, rather than stability, determines the timestep. The scheme is second-order accurate and shown to be equivalent to a simple preconditioning method. We show how the diffusion operators can be handled so as to yield the property of robust damping, i.e., dissipating the solution at all values of the parameter $\mathcal D\dt$, where $\mathcal D$ is a diffusion operator and $\dt$ the timestep. The overall scheme remains second-order accurate even if the advection and diffusion operators do not commute. In the limit of no physical dissipation, and for a linear test wave problem, the method is shown to be symplectic. The method is tested on the problem of Kinetic Alfv\'en wave mediated magnetic reconnection. A Fourier (pseudo-spectral) representation is used. A 2-field gyrofluid model is used and an efficacious k-space SI operator for this problem is demonstrated. CPU speed-up factors over a CFL-limited explicit algorithm ranging from $\sim20$ to several hundreds are obtained, while accurately capturing the results of an explicit integration. Possible extension of these results to a real-space (grid) discretization is discussed., Comment: Submitted to the Journal of Computational Physics. Clarifications and caveats in response to referees, numerical demonstration of convergence rate, generalized symplectic proof

We present a theoretical framework for plasma turbulence in astrophysical plasmas (solar wind, interstellar medium, galaxy clusters, accretion disks). The key assumptions are that the turbulence is anisotropic with respect to the mean magnetic field and frequencies are low compared to the ion cyclotron frequency. The energy injected at the outer scale scale has to be converted into heat, which ultimately cannot be done without collisions. A KINETIC CASCADE develops that brings the energy to collisional scales both in space and velocity. Its nature depends on the physics of plasma fluctuations. In each of the physically distinct scale ranges, the kinetic problem is systematically reduced to a more tractable set of equations. In the "inertial range" above the ion gyroscale, the kinetic cascade splits into a cascade of Alfvenic fluctuations, which are governed by the RMHD equations at both the collisional and collisionless scales, and a passive cascade of compressive fluctuations, which obey a linear kinetic equation along the moving field lines associated with the Alfvenic component. In the "dissipation range" between the ion and electron gyroscales, there are again two cascades: the kinetic-Alfven-wave (KAW) cascade governed by two fluid-like Electron RMHD equations and a passive phase-space cascade of ion entropy fluctuations. The latter cascade brings the energy of the inertial-range fluctuations that was damped by collisionless wave-particle interaction at the ion gyroscale to collisional scales in the phase space and leads to ion heating. The KAW energy is similarly damped at the electron gyroscale and converted into electron heat. Kolmogorov-style scaling relations are derived for these cascades. Astrophysical and space-physical applications are discussed in detail., Comment: aastex using emulateapj, 65 pages, 10 figures; replaced to match published version

We show that under very general conditions, cluster plasmas threaded by weak magnetic fields are subject to very fast growing plasma instabilities driven by the anisotropy of the plasma pressure (viscous stress) with respect to the local direction of the magnetic field. Such an anisotropy will naturally arise in any weakly magnetized plasma that has low collisionality and is subject to stirring. The magnetic field must be sufficiently weak for the instabilities to occur, viz., beta>Re^{1/2}. The instabilities are captured by the extended MHD model with Braginskii viscosity. However, their growth rates are proportional to the wavenumber down to the ion gyroscale, so MHD equations with Braginskii viscosity are not well posed and a fully kinetic treatment is necessary. The instabilities can lead to magnetic fields in clusters being amplified from seed strength of ~10^{-18} G to dynamically important strengths of ~10 microG on cosmologically trivial time scales (~10^8 yr). The fields produced during the amplification stage are at scales much smaller than observed. Predicting the saturated field scale and structure will require a kinetic theory of magnetized cluster turbulence., Comment: aastex with emulateapj5; 4 pages; minor corrections to match final published version

Cluster plasmas are magnetised already at very low magnetic field strength. Low collisionality implies that conservation of the first adiabatic invariant results in an anisotropic viscous stress (Braginskii viscosity) or, equivalently, anisotropic plasma pressure. This triggers firehose and mirror instabilities, which have growth rates proportional to the wavenumber down to scales of the order of ion Larmor radius. This means that MHD equations with Braginskii viscosity are not well posed and fully kinetic description is necessary. In this paper, we review the basic picture of small-scale dynamo in the cluster plasma and attempt to reconcile it with the existence of plasma instabilities at collisionless scales., Comment: latex, 6 pages, 1 figure; Proceedings of "Magnetized Plasma in Galaxy Evolution", Sep. 27th-Oct. 1st 2004, Jagiellonian University, Krakow, Poland, Eds. K. T. Chyzy, R.-J. Dettmar, K. Otmianowska-Mazur and M. Soida

We consider the problem of incompressible, forced, nonhelical, homogeneous and isotropic MHD turbulence with no mean magnetic field and large magnetic Prandtl number. This type of MHD turbulence is the end state of the turbulent dynamo, which generates folded fields with small-scale direction reversals. We propose a model in which saturation is achieved as a result of the velocity statistics becoming anisotropic with respect to the local direction of the magnetic folds. The model combines the effects of weakened stretching and quasi-two-dimensional mixing and produces magnetic-energy spectra in remarkable agreement with numerical results at least in the case of a one-scale flow. We conjecture that the statistics seen in numerical simulations could be explained as a superposition of these folded fields and Alfv\'en-like waves that propagate along the folds., Comment: revtex, 4 pages, 2 figures; minor changes to match published version

Recent tokamak experiments employing off-axis, non-inductive current drive have found that a large central current hole can be produced. The current density is measured to be approximately zero in this region, though in principle there was sufficient current drive power for the central current density to have gone significantly negative. Recent papers have used a large aspect-ratio expansion to show that normal MHD equilibria (with axisymmetric nested flux surfaces, non-singular fields, and monotonic peaked pressure profiles) can not exist with negative central current. We extend that proof here to arbitrary aspect ratio, using a variant of the virial theorem to derive a relatively simple integral constraint on the equilibrium. However, this constraint does not, by itself, exclude equilibria with non-nested flux surfaces, or equilibria with singular fields and/or hollow pressure profiles that may be spontaneously generated., Comment: 5 pages, 3 figures. Submitted to Physics of Plasmas, Feb. 14, 2003. Revised Feb. 24, 2003. Vers. 2: revised May 29 to clarify points raised by referee, add references to recent work. July 18, accepted for publication

The growth and saturation of magnetic field in conducting turbulent media with large magnetic Prandtl numbers are investigated. This regime is very common in low-density hot astrophysical plasmas. During the early (kinematic) stage, weak magnetic fluctuations grow exponentially and concentrate at the resistive scale, which lies far below the hydrodynamic viscous scale. The evolution becomes nonlinear when the magnetic energy is comparable to the kinetic energy of the viscous-scale eddies. A physical picture of the ensuing nonlinear evolution of the MHD dynamo is proposed. Phenomenological considerations are supplemented with a simple Fokker--Planck model of the nonlinear evolution of the magnetic-energy spectrum. It is found that, while the shift of the bulk of the magnetic energy from the subviscous scales to the velocity scales may be possible, it occurs very slowly -- at the resistive, rather than dynamical, time scale (for galaxies, this means that generation of large-scale magnetic fields cannot be explained by this mechanism). The role of Alfvenic motions and the implications for the fully developed isotropic MHD turbulence are discussed., Comment: IOP latex, 19 pages, 6 figures; final published version