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Historians have convincingly shown the close ties U.S. physicists had with the military during the Cold War and have raised the question of whether this alliance affected the content of physics. Some have asserted that it distorted physics, shifting attention from fundamental problems to devices. Yet the papers of physicists in quantum electronics and quantum optics, fields that have been exemplary for those who hold the distortion thesis, show that the same scientists who worked on military devices simultaneously pursued fundamental and foundational topics. This essay examines one such physicist, Marlan O. Scully, with attention to both his extensive foundational studies and the way in which his applied and basic researches played off each other.