Kaisa Nieminen, Maija Tenkanen, Juan Alonso-Serra, Teemu H. Teeri, Laura Ragni, Jarkko Salojärvi, Ana Campilho, Sitaram Rajaraman, Pezhman Safdari, Mari Lehtonen, Juha Immanen, Riikka‐Marjaana Räsänen, Jari Yli-Kauhaluoma, Sara J. Fraser-Miller, Olga Blokhina, Tiina J. Kauppila, Omid Safronov, Kurt V. Fagerstedt, Kean-Jin Lim, Raisa Haavikko, Ykä Helariutta, Jaakko Kangasjärvi, Clare J. Strachan, Sun-Li Chong, Institute of Biotechnology, Viikki Plant Science Centre (ViPS), Plant-Fungal Interactions Group, Plant ROS-Signalling, Bioinformatics for Molecular Biology and Genomics (BMBG), Department of Agricultural Sciences, Organismal and Evolutionary Biology Research Programme, External Funding, Department of Food and Nutrition, Oxygen stress tolerance and lignin biosynthesis group, Plant Biology, Division of Pharmaceutical Chemistry and Technology, Yrjö Helariutta / Principal Investigator, Faculty of Biological and Environmental Sciences, VERIFIN, Drug Research Program, Tiina Kauppila / Principal Investigator, Research Centre for Ecological Change, Pharmaceutical Design and Discovery group, Jari Yli-Kauhaluoma / Principal Investigator, Teemu Teeri / Principal Investigator, Plant Production Sciences, Asteraceae developmental biology and secondary metabolism, Formulation and industrial pharmacy, Clare Strachan / Research Group, Pharmaceutical Spectroscopy and Imaging, School of Biological Sciences, and Singapore Centre for Environmental Life Sciences and Engineering (SCELSE)
Tree bark is a highly specialized array of tissues that plays important roles in plant protection and development. Bark tissues develop from two lateral meristems; the phellogen (cork cambium) produces the outermost stem-environment barrier called the periderm, while the vascular cambium contributes with phloem tissues. Although bark is diverse in terms of tissues, functions and species, it remains understudied at higher resolution. We dissected the stem of silver birch (Betula pendula) into eight major tissue types, and characterized these by a combined transcriptomics and metabolomics approach. We further analyzed the varying bark types within the Betulaceae family. The two meristems had a distinct contribution to the stem transcriptomic landscape. Furthermore, inter- and intraspecies analyses illustrated the unique molecular profile of the phellem. We identified multiple tissue-specific metabolic pathways, such as the mevalonate/betulin biosynthesis pathway, that displayed differential evolution within the Betulaceae. A detailed analysis of suberin and betulin biosynthesis pathways identified a set of underlying regulators and highlighted the important role of local, small-scale gene duplication events in the evolution of metabolic pathways. This work reveals the transcriptome and metabolic diversity among bark tissues and provides insights to its development and evolution, as well as its biotechnological applications. Published version