369 results on '"Phase dynamics"'
Search Results
2. Exploiting Information in Event-Related Brain Potentials from Average Temporal Waveform, Time–Frequency Representation, and Phase Dynamics
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Guang Ouyang and Changsong Zhou
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EEG ,ERP ,time-frequency analysis ,machine learning ,phase dynamics ,single trials ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Characterizing the brain’s dynamic pattern of response to an input in electroencephalography (EEG) is not a trivial task due to the entanglement of the complex spontaneous brain activity. In this context, the brain’s response can be defined as (1) the additional neural activity components generated after the input or (2) the changes in the ongoing spontaneous activities induced by the input. Moreover, the response can be manifested in multiple features. Three commonly studied examples of features are (1) transient temporal waveform, (2) time–frequency representation, and (3) phase dynamics. The most extensively used method of average event-related potentials (ERPs) captures the first one, while the latter two and other more complex features are attracting increasing attention. However, there has not been much work providing a systematic illustration and guidance for how to effectively exploit multifaceted features in neural cognitive research. Based on a visual oddball ERPs dataset with 200 participants, this work demonstrates how the information from the above-mentioned features are complementary to each other and how they can be integrated based on stereotypical neural-network-based machine learning approaches to better exploit neural dynamic information in basic and applied cognitive research.
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- 2023
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3. Phase Dynamics of the Dysthe Equation and the Bifurcation of Plane Waves
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Ratliff, D. J.
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- 2020
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4. Spatial Effects of Phase Dynamics on Oscillators Close to Bifurcation
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Yihan Wang and Jinjie Zhu
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phase dynamics ,saddle-node homoclinic bifurcation ,synchronization ,Mathematics ,QA1-939 - Abstract
The phase reduction approach has manifested its efficacy in investigating synchronization behaviors in limit-cycle oscillators. However, spatial distributions of the phase value on the limit cycle may lead to illusions of synchronizations for oscillators close to bifurcations. In this paper, we compared the phase sensitivity function in the spatial domain and time domain for oscillators close to saddle-node homoclinic (SNH) bifurcation, also known as saddle-node bifurcation on an invariant circle. It was found that the phase sensitivity function in the spatial domain can show the phase accumulation feature on the limit cycle, which can be ignored in the phase sensitivity function in the time domain. As an example, the synchronization distributions of uncoupled SNH oscillators driven by common and independent noises were investigated, where the space-dependent coupling function was considered on common noise. These results shed some light on the phase dynamics of oscillators close to bifurcations.
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- 2023
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5. Functional Contributions of Strong and Weak Cellular Oscillators to Synchrony and Light-shifted Phase Dynamics.
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Roberts, Logan, Leise, Tanya L, Welsh, David K, and Holmes, Todd C
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Brain ,Neurons ,Animals ,Mammals ,Drosophila ,Luminescent Measurements ,Biological Clocks ,Circadian Rhythm ,Light ,Darkness ,Models ,Theoretical ,Computer Systems ,Cryptochromes ,bioluminescence ,circadian ,light ,model simulations ,neural circuits ,phase dynamics ,Neurosciences ,Sleep Research ,1.1 Normal biological development and functioning ,Underpinning research ,Physiology ,Medical Physiology ,Neurology & Neurosurgery - Abstract
Light is the primary signal that calibrates circadian neural circuits and thus coordinates daily physiological and behavioral rhythms with solar entrainment cues. Drosophila and mammalian circadian circuits consist of diverse populations of cellular oscillators that exhibit a wide range of dynamic light responses, periods, phases, and degrees of synchrony. How heterogeneous circadian circuits can generate robust physiological rhythms while remaining flexible enough to respond to synchronizing stimuli has long remained enigmatic. Cryptochrome is a short-wavelength photoreceptor that is endogenously expressed in approximately half of Drosophila circadian neurons. In a previous study, physiological light response was measured using real-time bioluminescence recordings in Drosophila whole-brain explants, which remain intrinsically light-sensitive. Here we apply analysis of real-time bioluminescence experimental data to show detailed dynamic ensemble representations of whole circadian circuit light entrainment at single neuron resolution. Organotypic whole-brain explants were either maintained in constant darkness (DD) for 6 days or exposed to a phase-advancing light pulse on the second day. We find that stronger circadian oscillators support robust overall circuit rhythmicity in DD, whereas weaker oscillators can be pushed toward transient desynchrony and damped amplitude to facilitate a new state of phase-shifted network synchrony. Additionally, we use mathematical modeling to examine how a network composed of distinct oscillator types can give rise to complex dynamic signatures in DD conditions and in response to simulated light pulses. Simulations suggest that complementary coupling mechanisms and a combination of strong and weak oscillators may enable a robust yet flexible circadian network that promotes both synchrony and entrainment. A more complete understanding of how the properties of oscillators and their signaling mechanisms facilitate their distinct roles in light entrainment may allow us to direct and augment the circadian system to speed recovery from jet lag, shift work, and seasonal affective disorder.
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- 2016
6. Geospatial investigation on transitional (quiescence to surge initiation) phase dynamics of Monacobreen tidewater glacier, Svalbard
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Debangshu Banerjee, Vaibhav Garg, and Praveen K. Thakur
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Atmospheric Science ,geography ,geography.geographical_feature_category ,Flow (psychology) ,Tidewater glacier cycle ,Aerospace Engineering ,Astronomy and Astrophysics ,Glacier ,Geodesy ,Geophysics ,Phase dynamics ,Space and Planetary Science ,Equilibrium line altitude ,Percolation ,General Earth and Planetary Sciences ,Surge ,Geology ,Tidewater - Abstract
The change in the phase, from quiescence to surge, may perturb the glacier’s dynamical behavior. To understand these changes through geospatial technique, the fastest moving tidewater Monacobreen Glacier, Svalbard, was studied for the year 2016–2019. It was elucidated that the surge had initiated during 2017–2018 before it the glacier was in quiescence since 2001. Initially, the glacier radar zones, namely percolation refreeze, lower percolation, and clean ice, were identified using the multi-temporal SAR data. These zones were utilized to delineate the equilibrium line altitude, and it was found that it is continuously moving down during surging, unlike the quiescence phase. The accumulation area ratio was always more than 0.67 throughout the analysis. The seasonal change in glacier surface velocity for both the phases was estimated, adapting the most appropriate Offset Tracking approach using the SAR data. The mean velocity over the main trunk was found to vary from 0.5 to 4 m/day. Thereafter, Glen's flow law equation was used to estimate the ice-thickness and found that the glacier has an average thickness range of 216–326 m in quiescence and 136–244 m during the surging. The analysis depicted that the basal shear stresses are increasing with surging, and the viscosity is decreasing. It can be said that the transition of the glacier from quiescent to surging phase has entirely changed its dynamic behavior and characteristics. Further, in the absence of field observations, the geospatial technique may provide reasonable estimates of the glacier’s physical and dynamical parameters.
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- 2022
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7. Bayesian Estimation of Phase Dynamics Based on Partially Sampled Spikes Generated by Realistic Model Neurons
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Kento Suzuki, Toshio Aoyagi, and Katsunori Kitano
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coupled oscillators ,phase dynamics ,multi-neuronal spikes ,Bayesian estimation ,connectivity inference ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
A dynamic system showing stable rhythmic activity can be represented by the dynamics of phase oscillators. This would provide a useful mathematical framework through which one can understand the system's dynamic properties. A recent study proposed a Bayesian approach capable of extracting the underlying phase dynamics directly from time-series data of a system showing rhythmic activity. Here we extended this method to spike data that otherwise provide only limited phase information. To determine how this method performs with spike data, we applied it to simulated spike data generated by a realistic neuronal network model. We then compared the estimated dynamics obtained based on the spike data with the dynamics theoretically derived from the model. The method successfully extracted the modeled phase dynamics, particularly the interaction function, when the amount of available data was sufficiently large. Furthermore, the method was able to infer synaptic connections based on the estimated interaction function. Thus, the method was found to be applicable to spike data and practical for understanding the dynamic properties of rhythmic neural systems.
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- 2018
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8. Genuine nonlinearity and its connection to the modified Korteweg–de Vries equation in phase dynamics
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Daniel James Ratliff
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Conservation law ,F300 ,Applied Mathematics ,Connection (vector bundle) ,General Physics and Astronomy ,Statistical and Nonlinear Physics ,Context (language use) ,Classification of discontinuities ,Nonlinear system ,Classical mechanics ,Phase dynamics ,Modulation (music) ,Korteweg–de Vries equation ,Mathematical Physics ,Mathematics - Abstract
The study of hyperbolic waves involves various notions which help characterise how these structures evolve. One important facet is the notion of genuine nonlinearity, namely the ability for shocks and rarefactions to form instead of contact discontinuities. In the context of the Whitham modulation equations, this paper demonstrate that a loss of genuine nonlinearity leads to the appearance of a dispersive set of dynamics in the form of the modified Korteweg de-Vries equation governing the evolution of the waves instead. Its form is universal in the sense that its coefficients can be written entirely using linear properties of the underlying waves such as the conservation laws and linear dispersion relation. This insight is applied to two systems of physical interest, one an optical model and the other a stratified hydrodynamics experiment, to demonstrate how it can be used to provide insight into how waves in these systems evolve when genuine nonlinearity is lost.
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- 2021
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9. Study of Phase Dynamics in Moderately Damped Josephson Junctions
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Massarotti, D., Longobardi, L., Stornaiuolo, D., Galletti, L., Rotoli, G., Kawakami, A., Pepe, G. P., and Tafuri, F.
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- 2013
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10. In situ energy-dispersive X-ray diffraction of local phase dynamics during solvothermal growth of Cu4O3
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Jai Sharma, Haiyan Chen, Zhelong Jiang, John S. Okasinski, and Daniel P. Shoemaker
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In situ ,Diffraction ,Materials science ,Solvothermal synthesis ,Analytical chemistry ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,0104 chemical sciences ,Laboratory oven ,Phase dynamics ,Phase conversion ,Energy-dispersive X-ray diffraction ,0210 nano-technology - Abstract
Using in situ methods to characterize the state of a system during reactions is critical to understanding and improving solvothermal syntheses. This work demonstrates the use of in situ energy-dispersive X-ray diffraction (EDXRD) to investigate the local dynamics during solvothermal formation of Cu4O3 using a general-purpose full-sized laboratory oven. This allows for direct comparison of in situ data with laboratory-based reactions. Using in situ EDXRD, changes in the local amounts of Cu4O3, Cu2O and CuO within approximately 100 × 100 × 700 µm gauge volumes during solvothermal Cu4O3 formation were recorded. Fast conversion between Cu2O and CuO was observed in the solvothermal environment, whereas Cu4O3 was found to be chemically stable against disturbances once formed. The observed differences in local dynamics give further support to the differences in formation mechanisms between Cu4O3 and Cu2O/CuO proposed here.
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- 2021
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11. Modeling of gain and phase dynamics in quantum dot amplifiers
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Moreno, Pablo, Rossetti, Marco, Deveaud-Plédran, Benoît, and Fiore, Andrea
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- 2008
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12. The effect of anterior cruciate ligament recontruction on lower extremity relative phase dynamics during walking and running
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Kurz, Max J., Stergiou, Nicholas, Buzzi, Ugo H., and Georgoulis, Anastasios D.
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- 2005
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13. High-performance binder-free Li-ion batteries using dynamically transformed niobium oxide nanochannel electrodes
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Kim, Yeonjin, Yoo, JeongEun, and Lee, Kiyoung
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- 2025
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14. Slow-paced inspiration regularizes alpha phase dynamics in the human brain
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Shen-Mou Hsu, Chih-Hsin Tseng, Chang-Wei Hsieh, and Chao-Hsien Hsieh
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Adult ,Cerebral Cortex ,Male ,Physiology ,Computer science ,General Neuroscience ,Emotional functions ,Magnetoencephalography ,Alpha (ethology) ,Cognition ,Human brain ,Alpha Rhythm ,Young Adult ,medicine.anatomical_structure ,Respiratory Rate ,Phase dynamics ,Breathing ,medicine ,Humans ,Female ,Neuroscience - Abstract
The phase of low-frequency, rhythmic cortical activity is essential for organizing brain processes because it provides a recurrent temporal frame for information coding. However, the low-frequency cortical phase exhibits great flexibility in response to external influences. Given that brain rhythms have been found to track respiratory inputs, we hypothesized that slow breathing, commonly associated with mental regulation, could reorganize the relationship between these two rhythmic systems through the adjustment of the cortical phase to such a slow train of inputs. Based on simultaneous magnetoencephalography and respiratory measurements, we report that while participants performed paced breathing, slow relative to normal breathing modulated cortical phase activity in the alpha range across widespread brain areas. Such modulation effects were specifically locked to the middle of the inspiration stage and exhibited a well-structured pattern. At the single-subject level, the phase angles underlying the effects became more likely to be diametrically opposed across breaths, indicating unique and consistent phase adjustment to slow inspiratory inputs. Neither cardiac fluctuations nor breathing-unrelated task effects could account for the findings. We suggest that slow-paced inspiration could organize the cortical phase in a regularized phase pattern, revealing a rhythmic but dynamic neural network integrated with different neurophysiological systems through volitional control. NEW & NOTEWORTHY Breathing is more complicated than a simple gas exchange, as it is integrated with numerous cognitive and emotional functions. Controlled slow breathing has often been used to regulate mental processes. This magnetoencephalography study demonstrates that slow-paced relative to normal-paced inspiration could organize the timing of alpha rhythmic activities across breathing cycles in a structured manner over widespread brain areas. Our results reveal how a volitionally controlled change in respiratory behavior could systematically modulate cortical activity.
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- 2020
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15. Functional optoretinography: concurrent OCT monitoring of intrinsic signal amplitude and phase dynamics in human photoreceptors
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Guangying Ma, Tae-Hoon Kim, Taeyoon Son, and Xincheng Yao
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Physics ,0303 health sciences ,Retinal pigment epithelium ,genetic structures ,medicine.diagnostic_test ,Stimulus (physiology) ,01 natural sciences ,Signal ,Photoreceptor outer segment ,eye diseases ,Atomic and Molecular Physics, and Optics ,010309 optics ,03 medical and health sciences ,Amplitude ,medicine.anatomical_structure ,Phase dynamics ,Optical coherence tomography ,0103 physical sciences ,medicine ,sense organs ,Neuroscience ,030304 developmental biology ,Biotechnology ,Visual phototransduction - Abstract
Intrinsic optical signal (IOS) imaging promises a noninvasive method for objective assessment of retinal function. This study demonstrates concurrent optical coherence tomography (OCT) of amplitude-IOS and phase-IOS changes in human photoreceptors. A new procedure for differential-phase-mapping (DPM) is validated to enable depth-resolved phase-IOS imaging. Dynamic OCT revealed rapid amplitude-IOS and phase-IOS changes, which occur almost right away after the stimulus onset. These IOS changes were predominantly observed within the photoreceptor outer segment (OS), particularly two boundaries connecting to the inner segment and retinal pigment epithelium. The comparative analysis supports that both amplitude-IOS and phase-IOS attribute to transient OS morphological change associated with phototransduction activation in retinal photoreceptors. A simulation modeling is proposed to discuss the relationship between the photoreceptor OS length and phase-IOS changes.
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- 2021
16. Phase Dynamics Based and Spectral Charateristics of Directional Couplings in Ensemble of Three Oscillators
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Boris P. Bezruchko, Elena Navrotskaya, and Dmitry A. Smirnov
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Coupling ,Work (thermodynamics) ,Spectral approach ,Phase dynamics ,Series (mathematics) ,Computer science ,Spectrum (functional analysis) ,Structure (category theory) ,Sensitivity (control systems) ,Statistical physics - Abstract
The problem of directional coupling detection in ensembles of temporally evolving systems from observed time series is important in diverse fields. A small ensemble of three oscillators is a model of large ensembles which carry important features such as the distinction between direct and indirect influences and, therefore, allows the study of the methods for coupling detection in respect of their ability to distinguish between such influences and, hence, correctly identify directional couplings and provide their appropriate quantitative description. This work considers an ensemble of three exemplary oscillators as a test system to improve the coupling estimation method based on phase dynamics modeling and compare it to the spectral approach called Granger – Geweke spectrum. Possibilities of false conclusions about the structure of couplings are analyzed, sensitivity of both methods and interpretations of coupling characteristics are discussed.
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- 2020
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17. Phase dynamics of delay-coupled quasi-cycles with application to brain rhythms
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André Longtin and Arthur S. Powanwe
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Physics ,Coupling (electronics) ,0303 health sciences ,03 medical and health sciences ,0302 clinical medicine ,Rhythm ,Quantitative Biology::Neurons and Cognition ,Artificial neural network ,Phase dynamics ,Noise intensity ,Topology ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
The authors show that neural networks exhibiting noise-induced rhythms, also known as quasi-cycle oscillations, can synchronize through out-of-phase locking depending on the noise intensity and the size of the coupling delay
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- 2020
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18. The Role of the Solvent in the Condensed-Phase Dynamics and Identity of Chemical Bonds: The Case of the Sodium Dimer Cation in THF
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Benjamin J. Schwartz and Devon. R. Widmer
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010304 chemical physics ,Sodium ,media_common.quotation_subject ,Dimer ,chemistry.chemical_element ,Electronic structure ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Solvent ,Crystallography ,chemistry.chemical_compound ,chemistry ,Phase dynamics ,Chemical bond ,Identity (philosophy) ,0103 physical sciences ,Materials Chemistry ,Molecule ,Physical and Theoretical Chemistry ,media_common - Abstract
When a solute molecule is placed in solution, is it acceptable to presume that its electronic structure is essentially the same as that in the gas phase? In this paper, we address this question from a simulation perspective for the case of the sodium dimer cation (Na
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- 2020
19. Population of Small Mammals in the Vicinity of the Torey Lakes (Southeast Transbaikalia) during the Dry Climatic Phase: Dynamics and Connection with Precipitation
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Yu. A. Bazhenov
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0106 biological sciences ,0301 basic medicine ,geography ,education.field_of_study ,geography.geographical_feature_category ,030102 biochemistry & molecular biology ,Ecology ,010604 marine biology & hydrobiology ,Fauna ,Population ,01 natural sciences ,03 medical and health sciences ,Common species ,Phase dynamics ,parasitic diseases ,Spring (hydrology) ,Period (geology) ,Precipitation ,education ,Dry climate ,General Environmental Science - Abstract
The population and number dynamics of small mammals in the vicinity of the Torey lakes (Southeast Transbaikalia, Russia) were characterized between 2008 and 2017. The monitoring was carried out against the backdrop of the complete drying out of these largest lakes in the region. The stability of the fauna of small mammals was revealed over an 80-year period, although the structure of communities has changed significantly as a result of changes in moistening of the territory. Xerophilous species of mammals had an advantage in the period of studies in the dry climate phase. Correlation analysis showed a possible link between the population dynamics of some common species of small mammals with the precipitation amount of the current and previous years or with the precipitation amount of some spring (in one case, winter) months.
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- 2019
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20. Phase dynamics, structural, and magnetic properties of a Mn2.6Ga1−Sn alloy series
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Christian G. F. Blum, D. Hettmann, Wolfgang Löser, and Sabine Wurmehl
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010302 applied physics ,Materials science ,Condensed matter physics ,Annealing (metallurgy) ,Mechanical Engineering ,Alloy ,Metals and Alloys ,02 engineering and technology ,engineering.material ,021001 nanoscience & nanotechnology ,01 natural sciences ,Phase formation ,Magnetic anisotropy ,Tetragonal crystal system ,Phase dynamics ,Mechanics of Materials ,Metastability ,0103 physical sciences ,Materials Chemistry ,engineering ,Orthorhombic crystal system ,0210 nano-technology - Abstract
Although Mn-Ga alloys are discussed as novel permanent magnetic materials, there are several drawbacks, including the high price of Ga and the yet too small saturation magnetization to name a few. We used several guidelines to motivate the replacement of Ga by Sn to tackle these issues and explored the phase formation, structural and magnetic properties of a Mn 2.6 Ga 1− x Sn x alloy series. The structure of Sn-rich samples is dominated by the corresponding hexagonal and orthorhombic phases, while the structure of Ga-rich samples shows additional contributions from the tetragonal DO 22 structure. However, formation of the tetragonal phase happens only upon an appropriate annealing procedure. In contrast to the discussion in the literature, our experiments do not hint on the tetragonal DO 22 structure being metastable, but rather indicate the DO 22 structure being an equilibrium phase. In general, the experimentally found phase fractions impact on the magnetic properties and hard magnetic properties are downgraded very rapidly even if only a small amount of Ga is substituted by Sn. This indicates that the DO 22 phase found only in the Ga-rich samples is indeed the one which is most relevant for realization of high magnetic anisotropy.
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- 2018
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21. Phase Dynamics of Metal Fragmentation during Megaplastic (Severe) Deformation
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Dar`ia Serhiivna Troshchenko, Alexei V. Khomenko, and L. S. Metlov
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010302 applied physics ,Lyapunov function ,Phase transition ,Materials science ,Internal energy ,Metals and Alloys ,Thermodynamics ,01 natural sciences ,Metal ,symbols.namesake ,Fragmentation (mass spectrometry) ,Phase dynamics ,visual_art ,0103 physical sciences ,symbols ,visual_art.visual_art_medium ,Grain boundary ,010306 general physics ,Stationary state - Abstract
The fragmentation of metals during megaplastic (severe) deformation is described in terms of a two-defect model. The process kinetics has been studied qualitatively. A general expression for the Lyapunov indices, which determine the stability of limiting (stationary) structures, is derived. Critical conditions for controlling parameters are found, and the diagrams that determine the stability of stationary states are constructed.
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- 2018
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22. Estimation of Delay Times in Coupling Between Autonomic Regulatory Loops of Human Heart Rate and Blood Flow Using Phase Dynamics Analysis
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Tatyana A. Galushko, Mikhail D. Prokhorov, Vladimir S. Khorev, Anatoly S. Karavaev, Elena E. Lapsheva, and Anton R. Kiselev
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0301 basic medicine ,Physics ,Human heart ,Blood flow ,Autonomic regulation ,Coupling (electronics) ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Phase dynamics ,Control theory ,Cardiology and Cardiovascular Medicine ,030217 neurology & neurosurgery ,Delay time - Abstract
Objective:We assessed the delay times in the interaction between the autonomic regulatory loop of Heart Rate Variability (HRV) and autonomic regulatory loop of photoplethysmographic waveform variability (PPGV), showing low-frequency oscillations.Material and Methods:In eight healthy subjects aged 25–30 years (3 male, 5 female), we studied at rest (in a supine position) the simultaneously recorded two-hour signals of RR intervals (RRIs) chain and finger photoplethysmogram (PPG). To extract the low-frequency components of RRIs and PPG signal, associated with the low-frequency oscillations in HRV and PPGV with a frequency of about 0.1 Hz, we filtered RRIs and PPG with a bandpass 0.05-0.15 Hz filter. We used a method for the detection of coupling between oscillatory systems, based on the construction of predictive models of instantaneous phase dynamics, for the estimation of delay times in the interaction between the studied regulatory loops.Results:Averaged value of delay time in coupling from the regulatory loop of HRV to the loop of PPGV was 0.9±0.4 seconds (mean ± standard error of the means) and averaged value of delay time in coupling from PPGV to HRV was 4.1±1.1 seconds.Conclusion:Analysis of two-hour experimental time series of healthy subjects revealed the presence of delay times in the interaction between regulatory loops of HRV and PPGV. Estimated delay time in coupling regulatory loops from HRV to PPGV was about one second or even less, while the delay time in coupling from PPGV to HRV was about several seconds. The difference in delay times is explained by the fact that PPGV to HRV response is mediated through the autonomic nervous system (baroreflex), while the HRV to PPGV response is mediated mechanically via cardiac output.
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- 2017
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23. Simulation of Asymptotic Amplitude-Phase Dynamics for AFM Resonant Modes
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Sergey Belikov and Sergei Magonov
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Physics ,0209 industrial biotechnology ,Interaction forces ,Atomic force microscopy ,Mathematical properties ,02 engineering and technology ,021001 nanoscience & nanotechnology ,020901 industrial engineering & automation ,Amplitude ,Phase dynamics ,Simple (abstract algebra) ,Control system ,Statistical physics ,0210 nano-technology - Abstract
Asymptotic AFM amplitude-phase dynamics is a powerful modeling tool for the development of AFM control systems and applications. We explain the model and demonstrate simple practical examples that can be easily programmed and analyzed using simulation tools such as Control and Simulation Loop (National Instruments) or Simulink (Mathworks). We first introduce asymptotic AFM models, then formulate their mathematical properties relevant to AFM, and provide examples of simulation for Hertz and Lennard-Jones tip-sample interaction forces. Material of this paper can be used to study and practice AFM dynamics in simulation, as well as for design of AFM model-based control modes and applications.
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- 2019
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24. Nonlinear phase dynamics of ideal kink mode in the presence of shear flow
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Zhibin Guo and Yi Zhang
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Physics ,Nonlinear system ,Richardson number ,Ideal (set theory) ,Phase dynamics ,Mode (statistics) ,Mechanics ,Condensed Matter Physics ,Shear flow - Abstract
We investigate nonlinear phase dynamics of an ideal kink mode, induced by E × B flow. Here the phase is the cross phase (θ c) between perturbed stream function of velocity ( ϕ ˜ ) and magnetic field ( ψ ˜ ), i.e. θ c = θ ϕ − θ ψ . A dimensionless parameter, analogous to the Richardson number, R i = 16 γ kink 2 / ω ˆ E 2 (γ kink: the normalized growth rate of the pure kink mode; ω ˆ E : normalized E × B shearing rate) is defined to measure the competition between phase pinning by the current density and phase detuning by the flow shear. When R i > 1, θ c is locked to a fixed value, corresponding to the conventional eigenmode solution. When R i ≤ 1, θ c enters a phase slipping or oscillating state, corresponding to a nonmodal solution. The nonlinear phase dynamics method provides a more intuitive explanation of the complex dynamical behavior of the kink mode in the presence of E × B shear flow.
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- 2021
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25. Exact solutions of the equations of two-phase dynamics. Collapse of gas and particles in space
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A. V. Panov
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Partial differential equation ,Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,02 engineering and technology ,Invariant (physics) ,01 natural sciences ,Industrial and Manufacturing Engineering ,020303 mechanical engineering & transports ,Exact solutions in general relativity ,0203 mechanical engineering ,Phase dynamics ,0101 mathematics ,Mathematics - Abstract
Under consideration is the system of partial differential equations describing the dynamics of a two-phase medium. Exact partially invariant solutions of rank 1 and defect 1 of this system are obtained with respect to some four-dimensional subalgebras. The phenomenon of collapse (an instantaneous source) in a two-phase medium is described.
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- 2017
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26. Estimation of the time delay of coupling between oscillators from time realizations of oscillation phases for different properties of phase dynamics
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E. V. Sidak, Dmitry A. Smirnov, and Boris P. Bezruchko
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Van der Pol oscillator ,Radiation ,Oscillation ,Maximum likelihood ,Interval estimation ,Condensed Matter Physics ,01 natural sciences ,010305 fluids & plasmas ,Electronic, Optical and Magnetic Materials ,Nonlinear system ,Amplitude ,Phase dynamics ,Control theory ,Chaotic systems ,0103 physical sciences ,Statistical physics ,Electrical and Electronic Engineering ,010306 general physics ,Mathematics - Abstract
The problem of interval estimation of the time delay of the coupling between oscillatory systems from observed time series is considered. It is shown that the known asymptotic estimates based on the empirical model in the form of a system of first-order phase oscillators and the maximum likelihood formalism can lead to false inferences of the value of the time delay in two typical situations: 1) nonlinear low-dimensional systems whose phases are well-determined but, as a result of significant amplitude fluctuations, the phase approximation is insufficient for describing the dynamics and 2) systems whose phases are defined not quite well because of too large amplitude fluctuations. A method for empirical diagnostics of problematic situations and its modification (coarse estimation) providing a low probability of false inferences in these situation are proposed. The efficiency of the diagnostic criterion and coarse estimation suggested is demonstrated on reference systems with different dynamic properties (linear stochastic oscillators, van der Pol oscillators, and Ressler and Lorenz chaotic systems).
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- 2017
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27. Anomalous Phase Dynamics of Driven Graphene Josephson Junctions
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Sandesh S. Kalantre, Fan Yu, Francois Amet, Ming-Tso Wei, Kenji Watanabe, Takashi Taniguchi, James R. Williams, and M. Hernandez-Rivera
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Josephson effect ,Physics ,Condensed matter physics ,Condensed Matter - Mesoscale and Nanoscale Physics ,Graphene ,Chaotic ,FOS: Physical sciences ,Nonlinear Sciences - Chaotic Dynamics ,Bridge (interpersonal) ,law.invention ,Nonlinear system ,Phase dynamics ,law ,Condensed Matter::Superconductivity ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,Chaotic Dynamics (nlin.CD) ,Quantum - Abstract
Josephson junctions with weak-links of exotic materials allow the elucidation of the Josephson effect in previously unexplored regimes. Further, such devices offer a direct probe of novel material properties, for example in the search for Majorana fermions. In this work, we report on DC and AC Josephson effect of high-mobility, hexagonal boron nitride (h-BN) encapsulated graphene Josephson junctions. On the application of RF radiation, we measure phase-locked Shapiro steps. An unexpected bistability between $\pm 1$ steps is observed with switching times on the order of seconds. A critical scaling of a bistable state is measured directly from the switching time, allowing for direct comparison to numerical simulations. We show such intermittent chaotic behavior is a consequence of the nonlinear dynamics of the junction and has a sensitive dependence on the current-phase relation. This work draws connections between nonlinear phenomena in dynamical systems and their implications for ongoing condensed matter experiments exploring topology and exotic physics.
- Published
- 2019
28. Impact of Synchronization Phase Dynamics on DQ Impedance Measurement
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Hong Gong, Dongsheng Yang, and Xiongfei Wang
- Subjects
010302 applied physics ,Physics ,Focused Impedance Measurement ,impedance measurement ,020208 electrical & electronic engineering ,Mathematical analysis ,Coordinate system ,Perturbation (astronomy) ,02 engineering and technology ,Phase synchronization ,Physics::Classical Physics ,01 natural sciences ,Small-signal model ,Phase-locked loop ,Phase dynamics ,dq-frame ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,Physics::Accelerator Physics ,synchronization phase ,Electrical impedance ,impedance transformation - Abstract
Small-signal stability assessment of the three-phase system can be performed using the measured impedances of the load and source. To obtain the dc steady-state operation point, the impedances are measured in the rotating $\boldsymbol{dq}$ -frame, and the phase angle is needed for the coordinate transformation used in both the perturbation injection and the impedance calculation. However, the phase estimation may introduce additional dynamics, affecting the accuracy of impedance measurement. This paper investigates the impact of phase synchronization dynamics on the measured impedance results. It is revealed that the phase variations in the perturbation injection has little effect on the measured impedance, while the phase dynamics introduced in the impedance calculation may have a significant impact. Based on impedance transformation, a new impedance calculation method is proposed, which can reduce the errors caused by the phase dynamics. Finally, the simulation and experiment results verify the accuracy of the analytical results and the effectiveness of the proposed method.
- Published
- 2018
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29. Two-Phase Dynamics of DNA Supercoiling Based on DNA Polymer Physics Model
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Xinliang Xu, Jin Yu, and Biao Wan
- Subjects
chemistry.chemical_compound ,Phase dynamics ,Chemistry ,Biophysics ,Polymer physics ,DNA supercoil ,DNA - Published
- 2021
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- View/download PDF
30. Entrainment Control of Phase Dynamics
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Wei Qiao, John T. Wen, and A. Agung Julius
- Subjects
0301 basic medicine ,0209 industrial biotechnology ,Engineering ,business.industry ,Phase (waves) ,02 engineering and technology ,Optimal control ,Computer Science Applications ,03 medical and health sciences ,Light intensity ,030104 developmental biology ,020901 industrial engineering & automation ,Phase dynamics ,Control and Systems Engineering ,Control theory ,Limit cycle ,Boundary value problem ,Electrical and Electronic Engineering ,Entrainment (chronobiology) ,business ,Phase response curve - Abstract
First order phase reduced model is a good approximation of the dynamics of forced nonlinear oscillators near its limit cycle. The phase evolution is determined by the unforced frequency, the forcing term, and the phase response curve (PRC). Such models arise in biological oscillations such as in circadian rhythm, neural signaling, heart beat, etc. This technical note focuses on the phase regulation of the circadian rhythm using light intensity as the input. Though the model is simple, the circle topology of the state space needs to be carefully addressed. The most common entrainment method is to use a periodic input, such as in our daily light-dark cycle. We obtain the complete stable entrainment condition based on the entraiment input and the PRC. Motivated by the jet-lag problem, we also consider the minimum time entrainment control to achieve a specified phase shift. Application of the Pontryagin Minimum Principle leads to an efficient solution strategy for the optimal control, without solving the two-point boundary value problem. The optimal control may be further represented as a feedback control law based on the current and desired phases. Our analysis allows the answer to questions such as: When traveling from New York to Paris, is it faster to use light to shift the phase forward by 6 hours or delay the phase by 18 hours? The answer is somewhat counter-intuitive—delaying by 18 hours requires less time. The general answer depends on the light intensity level and the shape of the PRC. PRCs for human and Drosophila from the literature are used to illustrate the results.
- Published
- 2017
- Full Text
- View/download PDF
31. Exploiting Information in Event-Related Brain Potentials from Average Temporal Waveform, Time–Frequency Representation, and Phase Dynamics.
- Author
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Ouyang, Guang and Zhou, Changsong
- Subjects
EVOKED potentials (Electrophysiology) ,MACHINE learning - Abstract
Characterizing the brain's dynamic pattern of response to an input in electroencephalography (EEG) is not a trivial task due to the entanglement of the complex spontaneous brain activity. In this context, the brain's response can be defined as (1) the additional neural activity components generated after the input or (2) the changes in the ongoing spontaneous activities induced by the input. Moreover, the response can be manifested in multiple features. Three commonly studied examples of features are (1) transient temporal waveform, (2) time–frequency representation, and (3) phase dynamics. The most extensively used method of average event-related potentials (ERPs) captures the first one, while the latter two and other more complex features are attracting increasing attention. However, there has not been much work providing a systematic illustration and guidance for how to effectively exploit multifaceted features in neural cognitive research. Based on a visual oddball ERPs dataset with 200 participants, this work demonstrates how the information from the above-mentioned features are complementary to each other and how they can be integrated based on stereotypical neural-network-based machine learning approaches to better exploit neural dynamic information in basic and applied cognitive research. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
32. Two-Phase Dynamics and Hysteresis in the PEM Fuel Cell Catalyst Layer with the Lattice-Boltzmann Method
- Author
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Navneet Goswami, Partha P. Mukherjee, Thomas F. Fuller, and Jonathan B. Grunewald
- Subjects
Materials science ,Renewable Energy, Sustainability and the Environment ,Lattice Boltzmann methods ,Thermodynamics ,Proton exchange membrane fuel cell ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Catalysis ,Hysteresis ,Phase dynamics ,13. Climate action ,Materials Chemistry ,Electrochemistry ,0210 nano-technology ,Layer (electronics) - Abstract
In this work, a Lattice-Boltzmann-Method (LBM) model for simulating hysteresis in a proton exchange membrane (PEMFC) electrode is presented. One of the main challenges hindering study of the cathode catalyst layer (CCL) in PEMFCs is the lack of understanding of two-phase transport and how it affects electrochemical performance. Researchers have typically used high level approximations that oversimplify the microstructure of the CCL—these are known as macrohomogenous models. However, as the field has progressed, the flaws in these idealizations are being revealed, especially in areas of improving our understanding of flooding as well as catalyst layer hysteresis. Previously, the microstructure details needed to build an accurate mesoscale model have eluded researchers; however, with advances in tomography and focused-ion-beam scanning-electron-microscopy (FIB-SEM), creating these representations has become possible. Using LBM with these representations, the difficult problem of catalyst layer capillary hysteresis can be examined. In two-phase capillary hysteresis, both the equilibrium saturation position as well as absolute value depends on the wetting history. Based on the models, it is ascertained that at lower capillary numbers, the liquid begins to undergo capillary fingering – only above a capillary pressure of 5 MPa, a regime change into stable displacement is observed. As capillary fingering does not lead to uniform removal of liquid, the prediction is that because high capillary pressures are needed to change to the regime of stable displacement, wicking will not be an effective means of water removal. Figure 1
- Published
- 2020
- Full Text
- View/download PDF
33. Phase Dynamics and Macroscopic Quantum Tunneling
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Davide Massarotti, Francesco Tafuri, Massarotti, D., and Tafuri, F.
- Subjects
Physics ,Coupling (physics) ,Phase dynamics ,Quantum mechanics ,Metastability ,Quantum system ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Quantum ,Quantum tunnelling - Abstract
We will review concepts, theory and experimental results on whether and in which conditions a quantum system, governed by a single macroscopic degree of freedom interacting with its environment, can tunnel out of a metastable state. The macroscopic quantum tunneling (MQT) experiments discussed in this chapter demonstrate that \(\varphi \) is indeed a quantum variable. Differently from the tunneling of a microscopic entity, coupling to the environment plays a major role in the macroscopic analog, and can be so strong that the motion in the classically accessible region is highly damped.
- Published
- 2019
34. SCALING ANALYSIS OF THE A-PHASE DYNAMICS DURING SLEEP
- Author
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Hernán González-Aguilar, Martin O. Mendez, J. S. Murguía, Alfonso Alba, V. E. Arce-Guevara, and Elvia R. Palacios-Hernandez
- Subjects
Work (thermodynamics) ,Computer science ,Applied Mathematics ,0206 medical engineering ,Process (computing) ,Wavelet transform ,02 engineering and technology ,020601 biomedical engineering ,01 natural sciences ,010305 fluids & plasmas ,Wavelet ,Phase dynamics ,Modeling and Simulation ,0103 physical sciences ,Detrended fluctuation analysis ,Geometry and Topology ,Sleep (system call) ,Statistical physics ,Scaling - Abstract
In this work, the scaling behavior of the sleep process is evaluated by using detrended fluctuation analysis based on wavelets. The analysis is carried out from arrivals of short and recurrent cortical events called A-phases, which in turn build up the Cyclic Alternating Pattern phenomenon, and are classified in three types: A1, A2 and A3. In this study, 61 sleep recordings corresponding to healthy, nocturnal frontal lobe epilepsy patients and sleep-state misperception subjects, were analyzed. From the A-phase annotations, the onsets were extracted and a binary sequence with one second resolution was generated. An item in the sequence has a value of one if an A-phase onset occurs in the corresponding window, and a value of zero otherwise. In addition, we consider other different temporal resolutions from 2[Formula: see text]s to 256[Formula: see text]s. Furthermore, the same analysis was carried out for sequences obtained from the different types of A-phases and their combinations. The results of the numerical analysis showed a relationship between the time resolutions and the scaling exponents; specifically, for higher time resolutions a white noise behavior is observed, whereas for lower time resolutions a behavior towards to [Formula: see text]-noise is exhibited. Statistical differences among groups were observed by applying various wavelet functions from the Daubechies family and choosing the appropriate sequence of A-phase onsets. This scaling analysis allows the characterization of the free-scale dynamic of the sleep process that is specific for each sleep condition. The scaling exponent could be useful as a diagnosis parameter in clinics when sleep macrostructure does not offer enough information.
- Published
- 2020
- Full Text
- View/download PDF
35. Introduction to Condensed-Phase Dynamics
- Author
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Niels Engholm Henriksen and Flemming Yssing Hansen
- Subjects
Physics ,Phase dynamics ,Chemical physics ,Physics::Chemical Physics - Abstract
This chapter discusses chemical reactions in solution; first, how solvents modify the potential energy surface of the reacting molecules and second, the role of diffusion. As a first approximation, solvent effects are described by models where the solvent is represented by a dielectric continuum, focusing on the Onsager reaction-field model for solvation of polar molecules. The reactants of bimolecular reactions are brought into contact by diffusion, and the interplay between diffusion and chemical reaction that determines the overall reaction rate is described. The solution to Fick’s second law of diffusion, including a term describing bimolecular reaction, is discussed. The limits of diffusion control and activation control, respectively, are identified. It concludes with a stochastic description of diffusion and chemical reaction based on the Fokker–Planck equation, which includes the diffusion of particles interacting via a potential U(r).
- Published
- 2018
- Full Text
- View/download PDF
36. Author Correction: Vertex coloring of graphs via phase dynamics of coupled oscillatory networks
- Author
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Abhinav Parihar, Matthew Jerry, Nikhil Shukla, Arijit Raychowdhury, and Suman Datta
- Subjects
Combinatorics ,Vertex (graph theory) ,Multidisciplinary ,Phase dynamics ,lcsh:R ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,lcsh:Medicine ,lcsh:Q ,lcsh:Science ,Author Correction ,Mathematics - Abstract
While Boolean logic has been the backbone of digital information processing, there exist classes of computationally hard problems wherein this paradigm is fundamentally inefficient. Vertex coloring of graphs, belonging to the class of combinatorial optimization, represents one such problem. It is well studied for its applications in data sciences, life sciences, social sciences and technology, and hence, motivates alternate, more efficient non-Boolean pathways towards its solution. Here we demonstrate a coupled relaxation oscillator based dynamical system that exploits insulator-metal transition in Vanadium Dioxide (VO
- Published
- 2018
37. Estimation of Characteristics of Delayed Coupling Between Stochastic Oscillators from the Observed Phase Dynamics
- Author
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Boris P. Bezruchko, Dmitry A. Smirnov, and E. V. Sidak
- Subjects
Physics ,Quantum optics ,Nuclear and High Energy Physics ,Series (mathematics) ,Astronomy and Astrophysics ,Statistical and Nonlinear Physics ,Allowance (engineering) ,Physics::Geophysics ,Electronic, Optical and Magnetic Materials ,Coupling (physics) ,El Niño Southern Oscillation ,Phase dynamics ,North Atlantic oscillation ,Chaotic oscillators ,Statistical physics ,Electrical and Electronic Engineering ,Physics::Atmospheric and Oceanic Physics - Abstract
A method for estimating the characteristics of the delayed coupling between the oscillatory systems, which is based on the empirical simulation of the phase dynamics with allowance for the phase-noise correlatedness, is proposed. The method efficiency is illustrated FOR the standard stochastic and chaotic oscillators in numerical experiments. Using this method for analyzing climatic time series, we confirm the presence of the delayed influence of the El Nino Southern oscillation on the North Atlantic Oscillation.
- Published
- 2015
- Full Text
- View/download PDF
38. Investigation of Delay Time in Interaction between the Regulatory Circuits in the Cardiovascular System of Healthy Humans Using Modeling of Phase Dynamics
- Author
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Vladimir A. Shvartz, Vladimir I. Gridnev, Anton R. Kiselev, Elena E. Lapsheva, Anatoly S. Karavaev, Vladimir S. Khorev, Vladimir I. Ponomarenko, and Mikhail D. Prokhorov
- Subjects
Phase dynamics ,Computer science ,Control theory ,General Engineering ,General Physics and Astronomy ,Simulation ,Delay time ,Electronic circuit - Published
- 2016
- Full Text
- View/download PDF
39. Vibrational and condensed phase dynamics: general discussion
- Author
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R. J. Dwayne Miller, Junko Yano, Theo Keane, Lukas Miseikis, Hans Jakob Wörner, Peter M. Weber, Thomas J. Penfold, Oliver Schalk, Oleg Kornilov, Russell S. Minns, Oliver Gessner, Theis I. Sølling, Shaul Mukamel, Michael P. Minitti, Gareth Roberts, Kiyoshi Ueda, Wolfgang Domcke, Christopher J. Milne, Albert Stolow, Martin Centurion, Andrew J. Orr-Ewing, Vasilios G. Stavros, and Daniel M. Neumark
- Subjects
Materials science ,Phase dynamics ,Chemical physics ,Physical and Theoretical Chemistry - Published
- 2016
- Full Text
- View/download PDF
40. Phase Dynamics Modeling Technique for Estimation of Delayed Couplings between Nonlinear Oscillators Accounting for Influence of Amplitudes
- Author
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B. P. Bezruchko, E. V. Sidak, and D. A. Smirnov
- Subjects
Physics ,Nonlinear oscillators ,Amplitude ,Phase dynamics ,General Engineering ,General Physics and Astronomy ,Statistical physics - Published
- 2015
- Full Text
- View/download PDF
41. Phase dynamics modeling of parallel stacks of Josephson junctions
- Author
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I. R. Rahmonov and Yu. M. Shukrinov
- Subjects
Josephson effect ,Physics ,Nuclear and High Energy Physics ,Radiation ,High-temperature superconductivity ,Condensed matter physics ,Base (geometry) ,Nonlinear differential equations ,Atomic and Molecular Physics, and Optics ,law.invention ,Pi Josephson junction ,Phase dynamics ,Stack (abstract data type) ,law ,Radiology, Nuclear Medicine and imaging ,Current (fluid) - Abstract
The phase dynamics of two parallel connected stacks of intrinsic Josephson junctions (JJs) in high temperature superconductors is numerically investigated. The calculations are based on the system of nonlinear differential equations obtained within the CCJJ + DC model, which allows one to determine the general current-voltage characteristic of the system, as well as each individual stack. The processes with increasing and decreasing base currents are studied. The features in the behavior of the current in each stack of the system due to the switching between the states with rotating and oscillating phases are analyzed.
- Published
- 2014
- Full Text
- View/download PDF
42. Phase dynamics of single long Josephson junction in MgB2 superconductor
- Author
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Bal Ram Ghimire, Shanker Pd. Chimouriya, and Ju H. Kim
- Subjects
Physics ,Superconductivity ,Phase dynamics ,Condensed matter physics ,Long Josephson junction - Published
- 2018
- Full Text
- View/download PDF
43. On Some Properties of Cylindrically Transformed Systems With R(π) Symmetry and Phase Dynamics
- Author
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Asesh Roy Chowdhury and Anirban Ray
- Subjects
Classical mechanics ,Phase dynamics ,Quantum mechanics ,Symmetry (physics) ,Mathematics - Published
- 2014
- Full Text
- View/download PDF
44. Phase dynamics of freely swimming foils
- Author
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C. Finkel and Karl D. von Ellenrieder
- Subjects
Physics ,Thesaurus (information retrieval) ,Information retrieval ,Phase dynamics ,Mechanics of Materials ,Mechanical Engineering ,Condensed Matter Physics - Abstract
A two-dimensional D-shaped cylinder and heaving foil were mounted in tandem and used to simulate the main body and tail, respectively, of a natural swimmer. Thrust/drag measurements of the force on the foil and particle image velocimetry measurements of the flow downstream of the swimming system were conducted at a Reynolds number of about $\def \xmlpi #1{}\def \mathsfbi #1{\boldsymbol {\mathsf {#1}}}\let \le =\leqslant \let \leq =\leqslant \let \ge =\geqslant \let \geq =\geqslant \def \Pr {\mathit {Pr}}\def \Fr {\mathit {Fr}}\def \Rey {\mathit {Re}}10^4$ in a water channel with a constant free stream current speed. Two main sets of measurements were conducted: one set with the swimming system locked at a fixed streamwise location in the water channel as the heave frequency of the foil was varied; the other set with the system freely swimming to a desired set-point position from different upstream and downstream locations. When the freely swimming system reached and maintained its set-point position, so that its swimming speed matched that of the current, the oscillation frequency of the heaving foil corresponded to a Strouhal number of 0.36. Phase portraits of the measured thrust/drag forces reveal limit cycle oscillations for all swimming cases studied, which suggests that self-regulation drives the selection of this Strouhal number. No coupling was observed between the vortices shed by the D-shaped cylinder and the self-selected frequency of the heaving foil during free swimming. An examination of the ratio of the phase-locking indices for the input heaving motion of the foil and the coupled fluidic thrust/drag response reveals that it approaches a value of 0.5 over time when the freely swimming system is released from rest and allowed to achieve steady-state cruising. The jet produced by the freely swimming foil was inclined at an angle of approximately $4^\circ $ with respect to the direction of the mean flow.
- Published
- 2014
- Full Text
- View/download PDF
45. Collective phase dynamics of globally coupled oscillators: Noise-induced anti-phase synchronization
- Author
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Kawamura, Yoji
- Subjects
Physics ,Phase reduction ,Noise induced ,Phase (waves) ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,Synchronization ,Condensed Matter Physics ,Phase synchronization ,Noise (electronics) ,Nonlinear Sciences - Adaptation and Self-Organizing Systems ,Classical mechanics ,Phase dynamics ,Collective phase description ,Statistical physics ,Sensitivity (control systems) ,Nonlinear Fokker–Planck equations ,Noise ,Reduction (mathematics) ,Coupled oscillators ,Adaptation and Self-Organizing Systems (nlin.AO) - Abstract
We formulate a theory for the collective phase description of globally coupled noisy limit-cycle oscillators exhibiting macroscopic rhythms. Collective phase equations describing such macroscopic rhythms are derived by means of a two-step phase reduction. The collective phase sensitivity and collective phase coupling functions, which quantitatively characterize the macroscopic rhythms, are illustrated using three representative models of limit-cycle oscillators. As an important result of the theory, we demonstrate noise-induced anti-phase synchronization between macroscopic rhythms by direct numerical simulations of the three models., Comment: 19 pages, 11 figures
- Published
- 2014
- Full Text
- View/download PDF
46. Reconstruction of a random phase dynamics network from observations.
- Author
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Pikovsky, A.
- Subjects
- *
OSCILLATIONS , *ELECTROCHEMICAL apparatus , *OSCILLATING chemical reactions , *COUPLING constants , *COUPLING schemes - Abstract
We consider networks of coupled phase oscillators of different complexity: Kuramoto–Daido-type networks, generalized Winfree networks, and hypernetworks with triple interactions. For these setups an inverse problem of reconstruction of the network connections and of the coupling function from the observations of the phase dynamics is addressed. We show how a reconstruction based on the minimization of the squared error can be implemented in all these cases. Examples include random networks with full disorder both in the connections and in the coupling functions, as well as networks where the coupling functions are taken from experimental data of electrochemical oscillators. The method can be directly applied to asynchronous dynamics of units, while in the case of synchrony, additional phase resettings are necessary for reconstruction. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
47. Complex network analysis of phase dynamics underlying oil-water two-phase flows
- Author
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Zhong-Ke Gao, Qing Cai, Ningde Jin, Shan-Shan Zhang, and Yu-Xuan Yang
- Subjects
Multivariate statistics ,Multidisciplinary ,Spectral radius ,Complex network ,01 natural sciences ,Article ,010305 fluids & plasmas ,Physics::Fluid Dynamics ,Phase dynamics ,0103 physical sciences ,Entropy (information theory) ,Oil water ,Statistical physics ,010306 general physics ,Complex network analysis ,Simulation ,Clustering coefficient ,Mathematics - Abstract
Characterizing the complicated flow behaviors arising from high water cut and low velocity oil-water flows is an important problem of significant challenge. We design a high-speed cycle motivation conductance sensor and carry out experiments for measuring the local flow information from different oil-in-water flow patterns. We first use multivariate time-frequency analysis to probe the typical features of three flow patterns from the perspective of energy and frequency. Then we infer complex networks from multi-channel measurements in terms of phase lag index, aiming to uncovering the phase dynamics governing the transition and evolution of different oil-in-water flow patterns. In particular, we employ spectral radius and weighted clustering coefficient entropy to characterize the derived unweighted and weighted networks and the results indicate that our approach yields quantitative insights into the phase dynamics underlying the high water cut and low velocity oil-water flows.
- Published
- 2016
48. Phase dynamics of a Josephson junction ladder driven by modulated currents
- Author
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Takaaki Kawaguchi
- Subjects
Josephson effect ,Physics ,Random field ,Computer simulation ,Condensed matter physics ,Energy Engineering and Power Technology ,Condensed Matter Physics ,Classical XY model ,Electronic, Optical and Magnetic Materials ,Magnetic field ,Pi Josephson junction ,Phase dynamics ,Modulation ,Electrical and Electronic Engineering - Abstract
Phase dynamics of disordered Josephson junction ladders (JJLs) driven by external currents which are spatially and temporally modulated is studied using a numerical simulation based on a random field XY model. This model is considered theoretically as an effective model of JJLs with structural disorder in a magnetic field. The spatiotemporal modulation of external currents causes peculiar dynamical effects of phases in the system under certain conditions, such as the directed motion of phases and the mode-locking in the absence of dc currents. We clarify the details of effects of the spatiotemporal modulation on the phase dynamics.
- Published
- 2011
- Full Text
- View/download PDF
49. Reconstruction of a random phase dynamics network from observations
- Author
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Arkady Pikovsky
- Subjects
Physics ,Coupling ,Mean squared error ,Phase (waves) ,Institut für Physik und Astronomie ,General Physics and Astronomy ,FOS: Physical sciences ,Function (mathematics) ,Inverse problem ,Topology ,01 natural sciences ,Nonlinear Sciences - Adaptation and Self-Organizing Systems ,010305 fluids & plasmas ,Phase dynamics ,Asynchronous communication ,0103 physical sciences ,ddc:530 ,Minification ,010306 general physics ,Adaptation and Self-Organizing Systems (nlin.AO) - Abstract
We consider networks of coupled phase oscillators of different complexity: Kuramoto–Daido-type networks, generalized Winfree networks, and hypernetworks with triple interactions. For these setups an inverse problem of reconstruction of the network connections and of the coupling function from the observations of the phase dynamics is addressed. We show how a reconstruction based on the minimization of the squared error can be implemented in all these cases. Examples include random networks with full disorder both in the connections and in the coupling functions, as well as networks where the coupling functions are taken from experimental data of electrochemical oscillators. The method can be directly applied to asynchronous dynamics of units, while in the case of synchrony, additional phase resettings are necessary for reconstruction.
- Published
- 2017
- Full Text
- View/download PDF
50. Functional Contributions of Strong and Weak Cellular Oscillators to Synchrony and Light-shifted Phase Dynamics
- Author
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Roberts, L, Leise, TL, Welsh, DK, and Holmes, TC
- Subjects
Neurons ,Mammals ,Neurology & Neurosurgery ,Light ,Physiology ,1.1 Normal biological development and functioning ,Medical Physiology ,Neurosciences ,Brain ,Darkness ,bioluminescence ,phase dynamics ,Circadian Rhythm ,Cryptochromes ,circadian ,Theoretical ,Biological Clocks ,Models ,Computer Systems ,Luminescent Measurements ,Animals ,Drosophila ,model simulations ,Sleep Research ,neural circuits - Abstract
Light is the primary signal that calibrates circadian neural circuits and thus coordinates daily physiological and behavioral rhythms with solar entrainment cues. Drosophila and mammalian circadian circuits consist of diverse populations of cellular oscillators that exhibit a wide range of dynamic light responses, periods, phases, and degrees of synchrony. How heterogeneous circadian circuits can generate robust physiological rhythms while remaining flexible enough to respond to synchronizing stimuli has long remained enigmatic. Cryptochrome is a short-wavelength photoreceptor that is endogenously expressed in approximately half of Drosophila circadian neurons. In a previous study, physiological light response was measured using real-time bioluminescence recordings in Drosophila whole-brain explants, which remain intrinsically light-sensitive. Here we apply analysis of real-time bioluminescence experimental data to show detailed dynamic ensemble representations of whole circadian circuit light entrainment at single neuron resolution. Organotypic whole-brain explants were either maintained in constant darkness (DD) for 6 days or exposed to a phase-advancing light pulse on the second day. We find that stronger circadian oscillators support robust overall circuit rhythmicity in DD, whereas weaker oscillators can be pushed toward transient desynchrony and damped amplitude to facilitate a new state of phase-shifted network synchrony. Additionally, we use mathematical modeling to examine how a network composed of distinct oscillator types can give rise to complex dynamic signatures in DD conditions and in response to simulated light pulses. Simulations suggest that complementary coupling mechanisms and a combination of strong and weak oscillators may enable a robust yet flexible circadian network that promotes both synchrony and entrainment. A more complete understanding of how the properties of oscillators and their signaling mechanisms facilitate their distinct roles in light entrainment may allow us to direct and augment the circadian system to speed recovery from jet lag, shift work, and seasonal affective disorder.
- Published
- 2016
- Full Text
- View/download PDF
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