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A greater appreciation of biotic responses to environmental changes is warranted in small, shallow lakes because of the high number of these habitats, and their unique contributions to regional biodiversity. Furthermore, recent water chemistry monitoring data show that shallow lakes in Ontario are sensitive and have responded significantly to environmental stressors such as acid deposition and lake water calcium decline. Here, we use paleoecological techniques to examine cladoceran assemblages in modern and pre-industrial sediments of 30 shallow lakes to determine the key environmental gradients that influence present-day assemblages, and to assess how assemblage structure has changed since pre-industrial times (pre-1850s). Redundancy analysis of present-day cladoceran assemblages and key environmental variables identified lake surface area and Secchi depth as significant predictors of assemblage composition. In our data set, Secchi depth was not correlated to water clarity but rather to macrophyte cover, suggesting that cladoceran assemblages were highly influenced by habitat structure. In contrast to nearby, deeper lakes, where pelagic cladoceran taxa have changed significantly in relative abundance over time, cladoceran assemblages in present-day and pre-industrial sediments of shallow lakes did not differ significantly in composition. While the specific reasons for this muted response are unknown, we hypothesize that: (1) littoral taxa may be less sensitive to low Ca concentrations, or ecological thresholds have not yet been crossed or are lower for littoral taxa; (2) calcium availability may vary spatially within shallow lakes, and this is not captured in a single measure of water chemistry from the centre of the lake; and/or (3) habitat structure is more important than water chemistry as a predictor of assemblage composition in these study lakes, and this has not changed significantly over time.

Understanding the long-term controls on cladoceran size structure has important implications for aquatic ecosystems. Although there has been considerable interest in zooplankton size trends for Canadian Shield lakes, data are not available for zooplankton size structure prior to the period of anthropogenic disturbances. Here, we present pre- and post-impact size data for the common pelagic cladocerans Bosmina and Daphnia for 44 well-studied Shield lakes in south-central Ontario (Canada). We show that Daphnia were larger and that the length of Bosmina body appendages (mucrones and antennules) was longer in pre-industrial times than they are today. The reduction in Bosmina appendage length we observed may suggest a reduction in copepod predation pressure since pre-industrial times. Reduced maximum body size in Daphnia is a predicted response to a warming climate in north temperate lakes; however, we suggest that alternate explanations, specifically acidification and subsequent recovery following emission reductions, should also be explored as the primary drivers of Daphnia size changes in this lake set. Overall, our results highlight the importance of pre-impact data for understanding the long-term controls on cladoceran body size from pre-1850 to present.

Fossil cladoceran remains preserved in surface sediment samples from 44 oligotrophic lakes in south-central Ontario were examined to evaluate the relationships between species assemblages and measured environmental variables. Differences in cladoceran assemblages were related to physical and chemical variables using multivariate techniques. Redundancy Analysis (RDA) identified five environmental variables as significantly influencing assemblage composition: sulphate (SO42−), calcium (Ca2+), pH, maximum lake depth (Zmax) and dissolved organic carbon (DOC). There was a distinct separation of lakes and taxa along the ion gradient based on SO4, Ca and pH. Additionally, cladoceran communities in coloured, shallow lakes had relatively higher abundances of littoral chydorid species and the pelagic taxa Holopedium spp., and the Daphnia pulex complex. Deep, clear lakes had relatively higher abundances of other pelagic taxa. Predation by fish (measured as presence–absence) and Chaoborus (measured as density) were less significant than some of the physico-chemical variables in influencing cladoceran assemblage structure. However, this could be due to the limited resolution of the predation data that was available at the time of this study. The distribution of cladocerans in the surface sediment, and their relation to these important environmental variables, suggests that there is considerable potential for the use of sedimentary cladoceran remains as environmental indicators in south-central Ontario lakes.

Calcium concentrations are now commonly declining in softwater boreal lakes. Although the mechanisms leading to these declines are generally well known, the consequences for the aquatic biota have not yet been reported. By examining crustacean zooplankton remains preserved in lake sediment cores, we document near extirpations of calcium-rich Daphnia species, which are keystone herbivores in pelagic food webs, concurrent with declining lake-water calcium. A large proportion (62%, 47 to 81% by region) of the Canadian Shield lakes we examined has a calcium concentration approaching or below the threshold at which laboratory Daphnia populations suffer reduced survival and fecundity. The ecological impacts of environmental calcium loss are likely to be both widespread and pronounced.

Zooplankton communities in Boreal Shield lakes of south-central Ontario, Canada, have become increasingly exposed to the effects of multiple anthropogenic stressors, such as declines in calcium (Ca) and total phosphorus (TP) concentrations, shifts in predation regimes, and climate warming. The paleolimnological approach provides an effective means of examining cladoceran zooplankton communities prior to the onset of these major environmental stressors and assessing how the increasing impacts of these stressors have affected zooplankton community composition. We examined the chitinized remains of cladocerans from recent and pre-industrial (pre- ~1850s) sediments in 42 oligotrophic lakes from south-central Ontario and compared these assemblages using ANOSIM and SIMPER. Differences in cladoceran assemblages since pre-industrial times were related to five environmental variables that significantly influence cladoceran community composition in surface sediments. These included measured physical (depth), chemical [Ca, pH, sulphate, dissolved organic carbon (DOC)], and biological (fish community biomass) limnological variables. Two changes were recorded in the cladoceran species assemblages of the study lakes. The first was a significant increase in the ratio of pelagic species compared to littoral species over time in most lakes which we cannot attribute to any measured environmental variable with certainty but it likely represents a multiple stressor effect. The second was changes in relative abundances of daphniid cladocerans in several lakes since pre-industrial times, which we attribute to the interactive effects of several environmental stressors, including: differences in Ca availability within our lakes, resulting in decreased abundances of daphniids over time in lakes with lower Ca levels; long-term increases in DOC concentrations, which may provide refuge for daphniids from visual predators; and long-term declines in TP concentrations which may contribute to the dominance of species that are more efficient grazers, such as daphniids. Overall, this study provides field-based evidence that the modern-day cladoceran communities in south-central Ontario lakes are different than they were prior to human settlement in the region, and therefore these paleolimnological data provide a long-term, historical component to contemporary cladoceran datasets and an extended perspective on how multiple environmental stressors have impacted aquatic organisms from Boreal Shield lakes.

Daphnia and Bosmina fragments were identified and measured in the surface sediments of 42 lakes in the Muskoka-Haliburton region of Ontario, Canada, in an attempt to identify environmental factors that may influence cladoceran body size. Specifically, pecten length on Daphnia post-abdominal claws, antennule length on Bosmina headshields, and carapace and mucro lengths of Bosmina carapaces were measured. These measurements were then compared to limnological variables previously identified as possibly influencing cladoceran size, including dissolved organic carbon (DOC), total phosphorus (TP), pH, calcium (Ca), Chaoborus density, and fish presence/absence. Cladoceran size displayed a linear relationship to TP, with larger Bosmina and Daphnia present in lakes with lower nutrient levels. We suspect that, as larger individuals are more efficient grazers, they may competitively exclude smaller individuals when nutrients are limiting in these lakes. Bosmina mucro length and cladoceran community size structure displayed a step response to DOC, with mean size significantly smaller when DOC concentrations were higher than 5.89 mg L-1. Daphnia pecten length displayed a negative linear relationship to DOC above a concentration of 4.90 mg l-1. Reduced predation pressure from gape-limited macroinvertebrate predators, such as Chaoborus, may have influenced these relationships. DOC was also highly correlated to TP in these lakes, and size trends might be responding to the TP gradient rather than the DOC gradient. Mean cladoceran body size in acidic lakes (pH < 6.0) was significantly smaller than mean body size in circumneutral lakes (pH > 6.0). There was no relationship between size structure and Ca concentrations, attributed to a narrow Ca gradient in these lakes. Predation effects were examined using limited Chaoborus density and fish presence/absence data. Although there were no significant relationships between cladoceran size and Chaoborus density, some significant relationships between size variables and fish predation were identified. The sensitivity of size variables to certain environmental gradients suggests that size structure has the potential to be an effective paleolimnological tool.