1. Geospatial Dynamics of SARS-CoV-2 Variants during the Fifth Wave of COVID-19 in Punjab, Pakistan.
- Author
-
Beig, Muhammad Mubashar, Ali, Muhammad Asad, Javed, Hasnain, Yaqub, Tahir, Mehmood, Asim Khalid, Nawaz, Muhammad, Raza, Sohail, Ashraf, Muhammad Adnan, Shabbir, Muhammad Abu Bakr, Mukhtar, Nadia, Najeeb, Muhammad Imran, Aziz, Waqar, Mehmood, Adnan, Raza, Hamza, Masud, Awais, Basharat, Rida, and Anjum, Aftab Ahmad
- Subjects
SARS-CoV-2 ,COVID-19 ,EPIDEMIOLOGY ,NASOPHARYNX microbiology ,GENETIC mutation - Abstract
Background: The study was conducted in the various districts of Punjab, Pakistan, to ascertain the incidence and epidemiology of SARS-CoV-2 variants circulating in the population during the fifth wave of COVID-19. Method: A total of 9603 nasopharyngeal swab samples of suspected patients were collected from the different districts of Punjab from December 2021 to April 2022. In the BSL-3 facility, an auto-extractor (Uni-medica) was used to extract the RNA genome. Viral detection and quantification were performed using real-time reverse transcriptase PCR. Multiplex PCR was used to target different mutations of the spike protein in order to identify SARS-CoV-2 variants. Results: 711 samples were found to be positive from a total of 9603. The Omicron variant of concern (VOC) was the predominant lineage of SARS-CoV-2 circulating at the time of sampling. Ninety-one percent proportion of COVID-19 was caused by the Omicron, followed by the wild variant (3.80%) and Delta (68.11%). Men were found to have a greater Omicron prevalence (47.96%) than women (42.05%). Furthermore, compared to older individuals (32.07%) and younger kids (10.55%), adults had the higher percentage of Omicron (47.39%). Conclusion: This study brought attention to the Omicron variant's circulation in Punjab Province, Pakistan, during the COVID-19 fifth wave. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF