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Most studies aiming to explore the response of algae and zooplankton trophic interactions to climate variability have only been focused on unidirectional and very short‐term trends in temperature changes. As a result, the non‐stationary aspect of climate change (warming and cooling periods, frequencies) remains completely unstudied.We studied elemental and stable isotope composition of sedimentary organic matter, photosynthetic pigments, and carbon stable isotope composition of Cladocera resting eggs in a sediment record covering the last c. 2,600 years. We examined how past climate change acting at different timescales affected algal biomass and community composition, and carbon assimilation by zooplankton in a boreal lake.Our study revealed major effects of both long‐term climate trends and shorter‐term fluctuations on algae–zooplankton interactions in a boreal lake. We found the main climate trends, in particular the Little Ice Age, induced algal biomass and community composition changes and drastic changes in carbon assimilation by zooplankton. Interestingly, we found that temperature fluctuations could also contribute to regulating algae–zooplankton interactions. Specifically, we observed drastic changes in sedimentary markers and stable isotope composition of zooplankton remains during the most recent period, suggesting a strong influence of ongoing anthropogenic change on algae–zooplankton interactions.Our study confirms previous findings showing close long‐term linkage between the temporal dynamics of zooplankton diet and planktonic algae, and that both climate trends and short‐term fluctuations are key in regulating consumer–resource trophic interactions.Novel approaches that combine high temporal resolution paleolimnological reconstructions and contemporary monitoring studies are needed to better understand climate change effects on algae–zooplankton interactions and lake food webs. [ABSTRACT FROM AUTHOR]

We applied a multi-proxy palaeolimnological approach to provide insights into the natural variability and human-mediated trends of two interconnected temperate large shallow lakes, Peipsi and Võrtsjärv, during the twentieth century. The history of the lakes was assessed on the basis of age-related changes in the sediment main constituents (water, organic matter and carbonate), sub-fossil pigments, diatom assemblages and organic matter dissolved in pore water. The temporal changes in the palaeodata indicate an increase of the in-lake biological production in both lakes from about the 1960s, suggesting enhanced nutrient inputs. In subsequent decades, the gradual increase of autochthonous organic matter becomes more obvious, indicating progressive eutrophication of the lakes. Palaeolimnological indicators from the sediment record of Lake Peipsi indicate a slight recession of the lake's eutrophication in the 1990s but not for Lake Võrtsjärv. The results of the study also suggest that after the lakes became eutrophied, the climatically induced water-level fluctuations ceased to be the main driver determining the abundance of phytoplankton. Responses of the lakes to human-induced impacts are better recorded in the sediments of Lake Peipsi than in those of Lake Võrtsjärv, which is shallower of the two and where the wave-induced resuspension of deposits markedly smooths or erases the signals of environmental changes. The results of the investigation expand the knowledge on how large shallow lakes respond to human-mediated and natural perturbations, including those in the lake catchment areas and the capability of the lakes to store the chronology and sequence of these changes. [ABSTRACT FROM AUTHOR]

Understanding the long-term dynamics of ecological communities on the centuries-to-millennia scale is important for explaining the emergence of present-day biodiversity patterns and for predicting possible future scenarios. Fossil pigments and ancient DNA present in various sedimentary deposits can be analysed to study long-term changes in ecological communities. We analysed recent compilations of data, including fossil pigments, microfossils, and molecular inventories from the sedimentary archives, to understand the impact of gradual versus abrupt climate changes on the ecosystem status of a regional model lake over the last ∼14.5 kyr. Such long and complete paleo-archives are scarce in North-Eastern Europe. The study site lies in a sensitive area, both climatically and in respect to vegetation. Namely the maritime-continentality line runs west to east in the central Baltic area to NE Europe and its south-north transect lies within the gradual decay of the nemoral forest into a boreal environment. Therefore, the selected location is an ideal sampling point to decipher long term environmental changes in the temperate climate zone. The main objective of the present study was to find out external factors influencing phototroph dynamics at temperate Lake Lielais Svētiņu over the post-glacial period (∼14.5 kyr). We were able to model climate change together with vegetation change and the appearance of anthropogenic forcing, either as a gradual change or as abrupt events that influenced the phototrophs, which are keystone groups within the lacustrine ecosystem. Most interestingly, the gradual increase of species richness of phototrophs was linked to similar increase in fungal parasites of the same group – phototrophs. Abrupt climate change in the Late Glacial period caused abrupt events in the ecosystem but equally abrupt events were caused by gradual changes during the stable period of the Holocene Thermal Maximum (HTM). In addition, we highlight the increased frequency and degree of perturbation in pristine lakes due to low impact human activity over a larger region. Both observations demonstrate an impaired relationship between gradual external drivers and ecosystem response and apply to future scenarios of climate warming and increased human impact in north-eastern Europe. • Gradual climate change leads to natural eutrophication or oligotrophication processes depending on whether the climate is warming or cooling. • A threshold-like response of the phototroph community occurs when climate, lake ontogeny or human influence disrupts the in-lake community. • Low impact disruption can lead to increased microbial biodiversity in aquatic ecosystems, most prominently in fungal parasites of phototrophs, which could lead to future non-linear changes in lake ecological status. [ABSTRACT FROM AUTHOR]