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Pacific salmon experience prolonged elevation in corticosteroid hormones during important life history events including migration, reproduction, and senescence. These periods of elevated corticosteroids correspond with changes to immunity and energy metabolism; therefore, fish may be particularly vulnerable to mortality at these times. Recent studies found that stress-induced cortisol release associated with microbial community shifts in salmonids, raising the question of how longer-term corticosteroid dynamics that accompany life history transitions affect salmonid microbiomes. In this work, we experimentally evaluated the relationships between gut microbiome composition, chronically elevated corticosteroids, and mortality in juvenile Chinook salmon (Oncorhynchus tshawytscha). We found that treatment with slow-release implants of the corticosteroids cortisol or dexamethasone resulted in changes to the gut microbiome. Morbidity was also associated with microbiome composition, suggesting that the gut microbiome reflects individual differences in susceptibility to opportunistic pathogens. Additionally, we analyzed a small number of samples from adult fish at various stages of senescence. Results from these samples suggest that microbiome composition associated with gut integrity, and that the microbial communities of corticosteroid treated juveniles shift in composition toward those of senescent adults. Overall, findings from this work indicate that the gut microbiome correlates with mortality risk during periods of chronic corticosteroid elevation. [ABSTRACT FROM AUTHOR]

Pacific salmon (Oncorhynchus spp.) rearing in lakes and reservoirs above dams have been known to become heavily infected with an ectoparasitic copepod (Salmincola californiensis). Little is known about the factors that affect the parasite infection prevalence and intensity. However, previous research suggests that the parasite may negatively affect the fitness and survival of the host fish. The effect of water temperature, confinement and the density of the free‐swimming infectious stage of S. californiensis, the copepodid, on infection prevalence and intensity was evaluated by experimentally exposing juvenile Chinook Salmon (O. tshawytscha). Infection rates observed in wild populations were achieved under warm water (15–16°C) and high copepodid density (150–300/L) treatment conditions. Infection prevalence and intensity were also significantly higher in larger fish. During the infection experiment, 4.5% of infected fish died within 54 days with mortality significantly related to copepod infection intensity. The potential for autoinfection was compared to cross‐infection by cohabitation of infected fish with naïve fish. Previously infected fish had significantly greater infection intensity compared with naïve fish, indicating that infected fish can be reinfected and that they may be more susceptible than naïve fish. [ABSTRACT FROM AUTHOR]

Understanding and preserving intraspecific diversity (ISD) is important for species conservation. However, ISD units do not have taxonomic standards and are not universally recognized. The terminology used to describe ISD is varied and often used ambiguously. We compared definitions of terms used to describe ISD with use in recent studies of three fish taxa: sticklebacks (Gasterosteidae), Pacific salmon and trout (Oncorhynchus spp., "PST"), and lampreys (Petromyzontiformes). Life history describes the phenotypic responses of organisms to environments and includes biological parameters that affect population growth or decline. Life‐history pathway(s) are the result of different organismal routes of development that can result in different life histories. These terms can be used to describe recognizable life‐history traits. Life history is generally used in organismal‐ and ecology‐based journals. The terms paired species/species pairs have been used to describe two different phenotypes, whereas in some species and situations a continuum of phenotypes may be expressed. Our review revealed overlapping definitions for race and subspecies, and subspecies and ecotypes. Ecotypes are genotypic adaptations to particular environments, and this term is often used in genetic‐ and evolution‐based journals. "Satellite species" is used for situations in which a parasitic lamprey yields two or more derived, nonparasitic lamprey species. Designatable Units, Evolutionary Significant Units (ESUs), and Distinct Population Segments (DPS) are used by some governments to classify ISD of vertebrate species within distinct and evolutionary significant criteria. In situations where the genetic or life‐history components of ISD are not well understood, a conservative approach would be to call them phenotypes. [ABSTRACT FROM AUTHOR]

After returning to spawning areas, adult Pacific salmonOncorhynchusspp. often die without spawning successfully, which is commonly referred to as prespawn mortality. Prespawn mortality reduces reproductive success and can thereby hamper conservation, restoration, and reintroduction efforts. The primary source of information used to estimate prespawn mortality is collected through carcass surveys, but estimation can be difficult with these data due to imperfect detection and carcasses with unknown spawning status. To facilitate unbiased estimation of prespawn mortality and associated uncertainty, we developed a hidden-process mark–recovery model to estimate prespawn mortality rates from carcass survey data while accounting for imperfect detection and unknown spawning success. We then used the model to estimate prespawn mortality and identify potential associated factors for 3,352 adult spring Chinook SalmonO. tshawytschathat were transported above Foster Dam on the South Santiam River (Willamette River basin, Oregon) from 2009 to 2013. Estimated prespawn mortality was relatively low (≤13%) in most years (interannual mean = 28%) but was especially high (74%) in 2013. Variation in prespawn mortality estimates among outplanted groups of fish within each year was also very high, and some of this variation was explained by a trend toward lower prespawn mortality among fish that were outplanted later in the year. Numerous efforts are being made to monitor and, when possible, minimize prespawn mortality in salmon populations; this model can be used to provide unbiased estimates of spawning success that account for unknown fate and imperfect detection, which are common to carcass survey data. Received April 11, 2016; accepted October 2, 2016Published online January 9, 2017 [ABSTRACT FROM PUBLISHER]

Two experiments were conducted to determine the effects of a mild or severe stressor on the saltwater preference of juvenile spring chinook salmon (Oncorhynchus tshawytscha). To observe the response of fish to an overhead threat, we presented stressed fish with an avian predator model in the second experiment. Experiments were conducted in 757-L tanks containing a stable vertical salinity gradient. Only 69% of fish stressed by being chased for 2 min before saltwater introduction (mild stressor) held in salt water, whereas 95% of unchased control fish preferred the saltwater layer. After the more severe handling and confinement stressor, only 20% of fish entered and remained in salt water compared with 100% of unstressed controls. After the presentation of the avian model, stressed fish holding in fresh water moved into the saltwater layer, but this behavioral response was transient. Fish began returning to fresh water within 10 min, and after 1 h, only 26% of stressed fish remained in the saltwater layer. Stress significantly decreases the saltwater preference of chinook salmon that would otherwise select full-strength salt water and may affect behavior in the estuary. Although smoltification primes these fish for seawater residence, stress apparently induced a conflicting physiological motivation. [ABSTRACT FROM AUTHOR]

Studies on hydromineral balance in fishes frequently employ measurements of electrolytes following euthanasia. We tested the effects of fresh- or salt-water euthanasia baths of tricaine mesylate (MS-222) on plasma magnesium (Mg 2+ ) and sodium (Na + ) ions, cortisol and osmolality in fish exposed to saltwater challenges, and the ion and steroid hormone fluctuations over time following euthanasia in juvenile spring Chinook salmon ( Oncorhynchus tshawytscha ). Salinity of the euthanasia bath affected plasma Mg 2+ and Na + concentrations as well as osmolality, with higher concentrations in fish euthanized in saltwater. Time spent in the bath positively affected plasma Mg 2+ and osmolality, negatively affected cortisol, and had no effect on Na + concentrations. The difference of temporal trends in plasma Mg 2+ and Na + suggests that Mg 2+ may be more sensitive to physiological changes and responds more rapidly than Na + . When electrolytes and cortisol are measured as endpoints after euthanasia, care needs to be taken relative to time after death and the salinity of the euthanasia bath. [ABSTRACT FROM AUTHOR]

In semelparous Pacific salmon, increased cortisol levels accompany sexual maturation and may be related to the rapid senescence and death that occur after spawning. In fish with extremely high cortisol, pre-spawning mortality is more likely. This may be because elevated cortisol is accompanied by energy depletion and reduces the immune capacity of sexually maturing individuals, thus increasing their susceptibility to parasites and pathogens. Several studies have measured cortisol levels in Pacific salmon during the last few weeks prior to spawning, but there is a lack of information regarding longer-term changes in resting and stressed cortisol levels of migrating adult Pacific salmon. A better understanding of the scope of the cortisol response during sexual maturation could contribute to understanding the extremely high pre-spawning mortality experienced by some threatened populations of Pacific salmon. The objective of this study was to determine the scope of the cortisol stress response in spring Chinook salmon as well as the dynamics of resting cortisol during maturation. We conducted a laboratory experiment in which plasma cortisol in adult Chinook salmon was measured before and after application of a standardized stressor applied at monthly intervals during the last three months prior to spawning. We found that resting and stressed cortisol levels increased during the last three months prior to spawning. We also found that sexually maturing Chinook salmon are able to mount a cortisol response to acute stressors when resting levels are elevated during maturation. Additionally, the effects of stress and time on cortisol dynamics differed between males and females as well as between individuals, which has implications for population resilience to anthropogenic stressors in wild populations. [ABSTRACT FROM AUTHOR]

Induced triploidy typically causes sterility in teleost fishes, and has therefore been proposed as a tool to manage genetic risks that farmed and hatchery-produced salmon pose to wild populations. Application of this technology for aquaculture has been challenged by inferior growth, survivorship and, in the case of free-ranging anadromous salmonids, relatively low numbers of adult returns. There is little information on whether or not triploidy affects the physiological development of juvenile salmonids in ways that impair their ability to grow, imprint on natal waters, survive, and return from the ocean as adults. In this study we pressure treated fertilized eggs to produce two cohorts of triploid hatchery steelhead trout (i.e., anadromous Oncorhynchus mykiss). We calculated survivorship through early life stages, and measured gill ATPase and plasma thyroxine (T4) for yearling triploids and their full-sibling diploid controls. We found no clear pattern of difference between diploid and triploid steelhead for the biomarkers of smoltification T4 or ATPase. After a year of freshwater rearing, we transferred 448 tagged treatment and control fish to a saltwater tank, and tracked their growth and survivorship for over 15 months. Diploids outperformed triploids in growth and, by the end of our study, survivorship of diploids (72%) was more than twice that of triploids (35%). Our findings suggest that inferior growth and survivorship of triploids in saltwater seriously challenge the application of this technology for free-ranging steelhead and, by extension, Pacific salmon. Additional research is needed to identify and offset the causal mechanisms underpinning triploid attrition during saltwater rearing. [ABSTRACT FROM AUTHOR]