7,861 results
Search Results
2. Engineering the Signal Resolution of a Paper-Based Cell-Free Glutamine Biosensor with Genetic Engineering, Metabolic Engineering, and Process Optimization.
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Free, Tyler J., Talley, Joseph P., Hyer, Chad D., Miller, Catherine J., Griffitts, Joel S., and Bundy, Bradley C.
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GLUTAMINE , *PROCESS optimization , *BIOSENSORS , *OVERALL survival , *SURVIVAL rate , *ENGINEERS , *GENETIC engineering - Abstract
Specialized cancer treatments have the potential to exploit glutamine dependence to increase patient survival rates. Glutamine diagnostics capable of tracking a patient's response to treatment would enable a personalized treatment dosage to optimize the tradeoff between treatment success and dangerous side effects. Current clinical glutamine testing requires sophisticated and expensive lab-based tests, which are not broadly available on a frequent, individualized basis. To address the need for a low-cost, portable glutamine diagnostic, this work engineers a cell-free glutamine biosensor to overcome assay background and signal-to-noise limitations evident in previously reported studies. The findings from this work culminate in the development of a shelf-stable, paper-based, colorimetric glutamine test with a high signal strength and a high signal-to-background ratio for dramatically improved signal resolution. While the engineered glutamine test is important progress towards improving the management of cancer and other health conditions, this work also expands the assay development field of the promising cell-free biosensing platform, which can facilitate the low-cost detection of a broad variety of target molecules with high clinical value. [ABSTRACT FROM AUTHOR]
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- 2024
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3. 3D Semantic Segmentation of Brain Tumor for Overall Survival Prediction
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Agravat, Rupal R., Raval, Mehul S., Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
- Published
- 2021
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4. Brain Tumor Segmentation and Survival Prediction Using Automatic Hard Mining in 3D CNN Architecture
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Anand, Vikas Kumar, Grampurohit, Sanjeev, Aurangabadkar, Pranav, Kori, Avinash, Khened, Mahendra, Bhat, Raghavendra S., Krishnamurthi, Ganapathy, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2021
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5. Overall Survival Prediction for Glioblastoma on Pre-treatment MRI Using Robust Radiomics and Priors
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Suter, Yannick, Knecht, Urspeter, Wiest, Roland, Reyes, Mauricio, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2021
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6. Brain Tumor Segmentation and Survival Prediction
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Agravat, Rupal R., Raval, Mehul S., Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2020
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7. Brain Tumor Synthetic Segmentation in 3D Multimodal MRI Scans
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Hamghalam, Mohammad, Lei, Baiying, Wang, Tianfu, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2020
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8. International Liver Cancer Association (ILCA) White Paper on Biomarker Development for Hepatocellular Carcinoma
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Jorge A. Marrero, Morris Sherman, Yujin Hoshida, Ziding Feng, David J. Pinato, Young-Suk Lim, Amit G. Singal, Nabihah Tayob, Jean-Charles Nault, Valérie Paradis, Anna S. Lok, Sudhir Srivastava, Augusto Villanueva, Josep M. Llovet, and Jo Ann Rinaudo
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Adult ,Male ,Oncology ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Cirrhosis ,medicine.disease_cause ,Risk Assessment ,Article ,White paper ,Predictive Value of Tests ,Internal medicine ,Biomarkers, Tumor ,medicine ,Overall survival ,Humans ,Progression-free survival ,Early Detection of Cancer ,Societies, Medical ,Retrospective Studies ,Hepatitis B virus ,Hepatology ,business.industry ,Liver Neoplasms ,Gastroenterology ,Middle Aged ,medicine.disease ,Research Design ,Case-Control Studies ,Hepatocellular carcinoma ,Biomarker (medicine) ,Female ,Neoplasm Grading ,Liver cancer ,business - Published
- 2021
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9. European Neuroendocrine Tumor Society (ENETS) 2023 guidance paper for digestive neuroendocrine carcinoma.
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Sorbye, Halfdan, Grande, Enrique, Pavel, Marianne, Tesselaar, Margot, Fazio, Nicola, Reed, Nicholas Simon, Knigge, Ulrich, Christ, Emanuel, Ambrosini, Valentina, Couvelard, Anne, and Tiensuu Janson, Eva
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NEUROENDOCRINE tumors , *PROGNOSIS , *THERAPEUTICS , *OVERALL survival , *SURVIVAL rate , *MERKEL cell carcinoma , *IMMUNOTHERAPY - Abstract
This ENETS guidance paper, developed by a multidisciplinary working group, provides up‐to‐date and practical advice on the diagnosis and management of digestive neuroendocrine carcinoma, based on recent developments and study results. These recommendations aim to pave the road for more standardized care for our patients resulting in improved outcomes. Prognosis is generally poor for digestive NEC, most are advanced at diagnosis and median survival in metastatic disease is 11–12 months. Surgery can be of benefit for localized disease after extensive preoperative imaging. Carboplatin in combination with etoposide is recommended as first‐line treatment for metastatic disease. Irinotecan with fluoropyrimidines has the best evidence as second‐line treatment. Immunotherapy plays a minor role in biomarker‐unselected patients. Molecular profiling if available is encouraged to identify new targets. More prospective clinical trials are highly needed to fulfil the unmet needs in this field, especially on new predictive and prognostic biomarkers and to improve survival of patients with advanced disease. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Efficient Data Mining Analysis of Genomics and Clinical Data for Pharmacogenomics Applications
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Agapito, Giuseppe, Guzzi, Pietro Hiram, Cannataro, Mario, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Petrosino, Alfredo, editor, Loia, Vincenzo, editor, and Pedrycz, Witold, editor
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- 2017
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11. Seminal Papers in Urology: Darolutamide and survival in metastatic, hormone-sensitive prostate cancer.
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Oh, Claris and O'Callaghan, Michael
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PROSTATE cancer ,ANDROGEN deprivation therapy ,OVERALL survival ,METASTASIS ,UROLOGY - Abstract
The ARASENS trial recruited 1306 men with metastatic hormone sensitive prostate cancer. It investigated the effect of androgen deprivation therapy (ADT) and systemic therapy docetaxel in combination with a third novel drug – daralutamide, compared with placebo on overall survival. Triple therapy with ADT, docetaxel and darolutamide resulted in improved overall survival rates as compared with ADT, docetaxel and placebo (HR 0.68; 95% CI, 0.57–0.80; p < 0.001). The side effect profile for both treatments was similar. This randomised, double blinded, placebo controlled study, was assessed to have a low risk of bias using the Cochrane Risk of Bias 2 tool. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Impact of gross-total resection versus other extent of resections for the overall survival of anaplastic astrocytoma. A systematic literature review.
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Chaulagain, Dipak, Smolanka, Volodymyr, Smolanka, Andriy, and Munakomi, Sunil
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OVERALL survival ,ASTROCYTOMAS ,CONFERENCE papers ,ELECTRONIC information resource searching ,ANAPLASTIC thyroid cancer ,BIOPSY - Abstract
Aim: We aim to assess the overall survival (OS) in patients with Anaplastic Astrocytoma (AA) undergoing gross total resection (GTR) as compared to partial resection (PR) subtotal resection (STR), or biopsy. Methods: This systematic review followed Preferred Reporting Items for Systematic Review and Meta-analyses (PRISMA) guidelines. An electronic search from PubMed/Medline was conducted from their inception to 26th April 2022. We included AA patients undergoing any surgical intervention resulting in GTR, PR, STR or biopsy. We did not include letters, case reports, abstracts, conference papers, reviews, and studies where full text was unavailable. We included only those articles which were published in English. Results: Five cohorts were used in this study. Two studies assessed OS in GTR, PR/STR and biopsy, while one study compared GTR and STR/biopsy. Another study was used to compare OS between GTR and local excision/STR, and another was used to assess the complications/benefits of these surgeries. Three studies showed a significant increase in OS in patients who underwent GTR compared to the other interventions, while one study showed a non-significant effect on OS (p= 0.249). Conclusion: Our study concluded a significant increase in OS when patients with AA had GTR instead of STR, PR or biopsy. Although these surgeries might carry some disadvantages, GTR allows a more positive effect on neurological status. Still, more studies need to be conducted to assess the efficiency of these surgeries. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Ovarian cancer clinical trial endpoints: Society of Gynecologic Oncology white paper
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Robert L. Coleman, Mark F. Brady, Mark H. Einstein, Bradley J. Monk, Robert S. Mannel, Deborah K. Armstrong, Thomas J. Herzog, Jeannine A. Villella, Ronald D. Alvarez, J. Tate Thigpen, and Sharee Umpierre
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Oncology ,endocrine system ,medicine.medical_specialty ,genetic structures ,endocrine system diseases ,Endpoint Determination ,Gynecologic oncology ,Medical Oncology ,Article ,Disease-Free Survival ,White paper ,Internal medicine ,Biomarkers, Tumor ,Clinical endpoint ,Overall survival ,Humans ,Medicine ,Progression-free survival ,Drug Approval ,Societies, Medical ,Ovarian Neoplasms ,Clinical Trials as Topic ,business.industry ,Obstetrics and Gynecology ,medicine.disease ,female genital diseases and pregnancy complications ,Clinical trial ,Research Design ,Quality of Life ,Female ,business ,Ovarian cancer - Abstract
To explore the value of multiple clinical endpoints in the unique setting of ovarian cancer.A clinical trial workgroup was established by the Society of Gynecologic Oncology to develop a consensus statement via multiple conference calls, meetings and white paper drafts.Clinical trial endpoints have profound effects on late phase clinical trial design, result interpretation, drug development, and regulatory approval of therapeutics. Selection of the optimal clinical trial endpoint is particularly provocative in ovarian cancer where long overall survival (OS) is observed. The lack of new regulatory approvals and the lack of harmony between regulatory bodies globally for ovarian cancer therapeutics are of concern. The advantages and disadvantages of the numerous endpoints available are herein discussed within the unique context of ovarian cancer where both crossover and post-progression therapies potentially uncouple surrogacy between progression-free survival (PFS) and OS, the two most widely supported and utilized endpoints. The roles of patient reported outcomes (PRO) and health related quality of life (HRQoL) are discussed, but even these widely supported parameters are affected by the unique characteristics of ovarian cancer where a significant percentage of patients may be asymptomatic. Original data regarding the endpoint preferences of ovarian cancer advocates is presented.Endpoint selection in ovarian cancer clinical trials should reflect the impact on disease burden and unique characteristics of the treatment cohort while reflecting true patient benefit. Both OS and PFS have led to regulatory approvals and are clinically important. OS remains the most objective and accepted endpoint because it is least vulnerable to bias; however, the feasibility of OS in ovarian cancer is compromised by the requirement for large trial size, prolonged time-line for final analysis, and potential for unintended loss of treatment effect from active post-progression therapies. A large magnitude of effect in PFS improvement should establish benefit, and further communication with regulatory authorities to clarify acceptable endpoints should be undertaken.
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- 2014
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14. Therapeutic outcome of differentiated thyroid carcinoma.
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Alqambar, Mohammed H., Alsaeed, Jamal, Alwosabie, Abdulaziz, Alkaldi, Njoud, alsaud, Amal Abu, Alsaffar, Zainab, Aldossary, Bashayer, Emsaad, Gadeer, Alradwan, Sahar, Amin, Omar, Alenezy, Mansour, Saradi, Mais, and Kalifa, Fatima
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THYROID cancer ,MORTALITY risk factors ,KAPLAN-Meier estimator ,LYMPHATIC metastasis ,ELECTRONIC paper ,OVERALL survival - Abstract
Introduction: The majority of patients with Differentiated Thyroid Cancer (DTC) diagnosis have long-term survival, a considerable number may have a persistent or recurrent illness, and some may ultimately succumb to their thyroid cancer. The present study aimed to determine the disease-specific mortality and to identify the risk factors for recurrence. Material and Methods: This cohort research was conducted in the King Fahad Specialist Hospital in Dammam, Saudi Arabia. The electronic and paper files of all patients with a DTC diagnosis were reviewed. All 460 eligible individuals were risk-stratified using the 2015 American Thyroid Association. The Kaplan-Meier estimator was used to assess the Overall Survival (OS). Results: Out of 460 patients 369 (80.8%) were female. The median age 43.2 years (20 years-85 years). Patients were risk stratified using tumour node and metastasis (TNM) staging as well as American Thyroid Association (ATA) guidelines, based on that 270 (58.6%) patients were low risk, 146 (31.7%) patients intermediate risk and 44 (9.6%) patients fell in the high-risk category. The four patients who died were classified as high risk from the beginning with the following statistically significant risk factors for mortality, the median age of 66 years (p-value= 0.005), N1b lymph nodes metastasis (p-value 0.05) and unstimulated thyroglobulin level >5 (p-value 0.003). Conclusions: Differentiated thyroid cancer is common, the vast majority are low risk, and with the current strategy of management, the prognosis is excellent. Age > 55 years, presence of distant metastasis, and unstimulated thyroglobulin of >5 were considered factors that negatively influenced the survival. [ABSTRACT FROM AUTHOR]
- Published
- 2023
15. How is overall survival assessed in randomised clinical trials in cancer and are subsequent treatment lines considered? A systematic review.
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Royle, Kara-Louise, Meads, David, Visser-Rogers, Jennifer K., White, Ian R., and Cairns, David A.
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OVERALL survival ,CLINICAL trials ,RANDOMIZED controlled trials - Abstract
Background: Overall survival is the "gold standard" endpoint in cancer clinical trials. It plays a key role in determining the clinical- and cost-effectiveness of a new intervention and whether it is recommended for use in standard of care. The assessment of overall survival usually requires trial participants to be followed up for a long period of time. In this time, they may stop receiving the trial intervention and receive subsequent anti-cancer treatments, which also aim to extend survival, during trial follow-up. This can potentially change the interpretation of overall survival in the context of the clinical trial. This review aimed to determine how overall survival has been assessed in cancer clinical trials and whether subsequent anti-cancer treatments are considered. Methods: Two searches were conducted using MEDLINE within OVID© on the 9th of November 2021. The first sought to identify papers publishing overall survival results from randomised controlled trials in eight reputable journals and the second to identify papers mentioning or considering subsequent treatments. Papers published since 2010 were included if presenting or discussing overall survival in the context of treating cancer. Results: One hundred and thirty-four papers were included. The majority of these were presenting clinical trial results (98, 73%). Of these, 45 (46%) reported overall survival as a (co-) primary endpoint. A lower proportion of papers including overall survival as a (co-) primary endpoint compared to a secondary endpoint were published in recent years. The primary analysis of overall survival varied across the papers. Fifty-nine (60%) mentioned subsequent treatments. Seven papers performed additional analysis, primarily when patients in the control arm received the experimental treatment during trial follow-up (treatment switching). Discussion: Overall survival has steadily moved from being the primary to a secondary endpoint. However, it is still of interest with papers presenting overall survival results with the caveat of subsequent treatments, but little or no investigation into their effect. This review shows that there is a methodological gap for what researchers should do when trial participants receive anti-cancer treatment during trial follow-up. Future research will identify the stakeholder opinions, on how this methodological gap should be addressed. [ABSTRACT FROM AUTHOR]
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- 2023
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16. Chemoradiation of locally advanced biliary cancer: A PRISMA‐compliant systematic review.
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Bisello, Silvia, Malizia, Claudio, Mammini, Filippo, Galietta, Erika, Medici, Federica, Mattiucci, Gian Carlo, Cellini, Francesco, Palloni, Andrea, Tagliaferri, Luca, Macchia, Gabriella, Deodato, Francesco, Cilla, Savino, Brandi, Giovanni, Arcelli, Alessandra, and Morganti, Alessio G.
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BILIARY tract cancer ,GALLBLADDER cancer ,OVERALL survival ,CRIME & the press ,RADIOISOTOPE brachytherapy - Abstract
Introduction: Biliary tract cancers (BTC) are rare and aggressive neoplasms. The current management of locally advanced or unresectable BTC is primarily based on chemotherapy (CHT) alone, linked to a median overall survival (OS) of approximately 12 months. However, international guidelines still consider concurrent chemoradiation (CRT) as an alternative treatment option. This study aims to review the current evidence on "modern" CRT for primary or recurrent unresectable BTC. Materials and Methods: A comprehensive search was conducted on PubMed, Scopus, and Cochrane Library to identify relevant papers. Prospective or retrospective trials reporting outcomes after concurrent CRT of unresectable non‐metastatic, primary, or recurrent BTC were included. Only English‐written papers published between January 2010 and June 2022 were considered. Results: Seventeen papers, comprising a total of 1961 patients, were included in the analysis. Among them, 11 papers focused solely on patients with primary unresectable BTC, while two papers included patients with isolated local recurrences and four papers encompassed both settings. In terms of tumor location, 12 papers included patients with intrahepatic, extrahepatic, and hilar BTC, as well as gallbladder cancer. The median CRT dose delivered was 50.4 Gy (range: 45.0–72.6 Gy) using conventional fractionation. Concurrent CHT primarily consisted of 5‐Fluorouracil or Gemcitabine. The pooled rates of 1‐year progression‐free survival (PFS) and OS were 40.9% and 56.2%, respectively. The median 1‐ and 2‐year OS rates were 63.1% and 29.4%, respectively. Grade ≥3 acute gastrointestinal toxicity ranged from 5.6% to 22.2% (median: 10.9%), while grade ≥3 hematological toxicity ranged from 1.6% to 50.0% (median: 21.7%). Conclusion: Concurrent CRT is a viable alternative to standard CHT in patients with locally advanced BTC, offering comparable OS and PFS rates, along with an acceptable toxicity profile. However, prospective trials are needed to validate and further explore these findings. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Beyond hazard ratios: appropriate statistical methods for quantifying the clinical effectiveness of immune-oncology therapies – the example of the Netherlands.
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Corro Ramos, Isaac, Qendri, Venetia, and Al, Maiwenn
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SURVIVAL rate ,PROGRESSION-free survival ,LOG-rank test ,OVERALL survival ,DRUG efficacy - Abstract
Background: The Dutch Committee for the Evaluation of Oncological Drugs evaluates the effectiveness of new oncological treatments. The committee compares survival endpoints to the so-called PASKWIL-2023 criteria for palliative treatments, which define if treatment effects are considered clinically relevant. A positive recommendation depends on whether the median overall survival (OS) is below or above 12 months in the comparator arm. If the former applies, an OS benefit of at least 12 weeks, and a hazard ratio (HR) smaller than 0.7 are required. If the latter applies, an OS or progression free survival (PFS) benefit of at least 16 weeks, and an HR smaller than 0.7 are required. Nonetheless, the median survival time may not be reached and the proportional hazards (PH) assumption, quantified by the HR, is likely violated for immuno-oncology (IO) therapies, deeming these criteria inappropriate. Methods: We conducted a systematic literature review to identify statistical methods used to represent the clinical effectiveness of IO therapies based on trial data. We searched MEDLINE and EMBASE databases from inception to August 31, 2022, limited to English papers. Methodological studies, randomized controlled trials, and discussion papers recognising key issues of survival data analysis of IO therapies were eligible for inclusion. Results: A total of 1,035 unique references were identified. After full paper screening, 17 publications were included in the review. Additionally, 43 papers were identified through 'snowballing'. We conclude that the current PASKWIL-2023 criteria are methodologically incorrect under non-PH. In that case, single summary statistics fail to capture the treatment effect and any measure should be interpreted in combination with the Kaplan-Meier curves. We recommend 'parameter-free' measures, such as the difference in restricted mean survival time, avoiding assumptions on the underlying survival. Conclusions: The HR is commonly used to assess treatment effectiveness, without investigating the validity of the PH assumption. This happens with the application of the PASKWIL-2023 criteria for palliative oncology treatments, which can only be valid under a PH setting. Under non-PH, alternative treatment effect measures are suggested. We propose a step-by-step approach supporting the choice of the most appropriate methods to quantify treatment effectiveness that can be used to redefine the PASKWIL-2023 criteria, or similar criteria in other clinical areas. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Are Current Worldwide Studies Going to Answer the Important Questions Remaining in Adjuvant Chemotherapy of Breast Cancer?
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Brunner, K. W., Herfarth, Ch., editor, Senn, H. J., editor, Baum, M., editor, von Essen, C., editor, Diehl, V., editor, Hitzig, W., editor, Rajewsky, M. F., editor, Thomas, C., editor, and Senn, Hans-Jörg, editor
- Published
- 1984
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19. Paper or plastic? BCR-ABL1 quantitation and mutation detection from dried blood spots
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Jerald P. Radich, Olga Sala Torra, Amy L. Paguirigan, Lan Beppu, Rashmi Kumar, Susan Branford, Cecilia C. S. Yeung, Jordan L. Smith, Ted Gooley, Linda Welden, Jasmina Georgievski, Karisma Gupta, Torra, Olga Sala, Beppu, Lan, Smith, Jordan L, Welden, Linda, Georgievski, Jasmina, Gupta, Karisma, Kumar, Rashmi, Yeung, Cecilia CS, Paguirigan, Amy, Gooley, Ted A, Branford, Susan, and Radich, Jerald P
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0301 basic medicine ,Immunology ,Fusion Proteins, bcr-abl ,Letters to Blood ,Bioinformatics ,Biochemistry ,03 medical and health sciences ,Bcr abl1 ,0302 clinical medicine ,hemic and lymphatic diseases ,Leukemia, Myelogenous, Chronic, BCR-ABL Positive ,Overall survival ,Medicine ,Humans ,Mutation detection ,Dried blood ,business.industry ,Myeloid leukemia ,Cell Biology ,Hematology ,DNA ,030104 developmental biology ,030220 oncology & carcinogenesis ,Mutation ,Cancer research ,RNA ,Dried Blood Spot Testing ,mutation ,business ,blood spot specimen ,Tyrosine kinase - Abstract
To the editor: Tyrosine kinase inhibitors (TKIs) have dramatically changed the natural history of chronic myeloid leukemia (CML), with 10-year overall survival surpassing 80% for patients treated in chronic phase. Unfortunately, most of the world’s CML patients reside in low-resource areas, where
- Published
- 2016
20. Safety and efficacy of endoscopic mucosal resection for the treatment of early gastric cancer: A systematic study and meta-analysis.
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Vyas, Manoj Rameshachandra, Upadhye, Vijay, and R., Renuka Jyothi
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ENDOSCOPIC surgery ,STOMACH cancer ,SURGICAL complications ,OVERALL survival ,GASTRECTOMY - Abstract
Objective: Both gastrectomy and Endoscopic Resection (ER) are recognized as curative procedures for early-stage stomach cancer. Through this systematic review, we aimed to assess patient security, both early gastric cancer survivorship overall and disease-free cancer between ER and gastrectomy therapies. Materials and methods: The databases PubMed, Embase and Cochrane Library were used to perform a literature search. This meta-analysis includes studies that contrasted early gastric cancer treated with ER and gastrectomy. Before March 2019, we looked for clinical trials. We conducted a systematic analysis using Stata 12.0 software. Results: In this comprehensive review, nine papers were analysed. ER, therapy was linked to fewer surgical complications (OR=0.47, 95% CI 0.34- 0.65) and a shorter hospital stay (WMD=8.53, 95% CI 11.56 to 5.49). ER is carried out safely, reducing hospitalization and after-surgery issues instead of a gastroplasty. Recurrence rates were more significant with ER therapy than gastrectomy (HR=3.56, 95% CI 1.86-6.84), primarily for only ER therapy, resulting in the development of metachronous gastric cancers. However, ER may once more be used to effectively treat most metachronous stomach cancers and adverse effects on early-stage gastric cancer patients' overall survival. ER and gastrectomy, overall survival rate remained constant (HR=0.84, 95% CI 0.63-1.13). Conclusion: Early gastric cancer curative treatment is acceptable with an ER or a gastrectomy. ER is superior to early gastric cancer treatment with gastrectomy patients that meet the requirements of ER therapy. However, overall survival rates are comparable, there are fewer postoperative problems, and the period of stay is shorter. [ABSTRACT FROM AUTHOR]
- Published
- 2024
21. Evaluation of the diagnostic and prognostic clinical values of circulating tumor DNA and cell-free DNA in pancreatic malignancies: a comprehensive meta-analysis.
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Arayici, Mehmet Emin, İnal, Abdullah, Basbinar, Yasemin, and Olgun, Nur
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CIRCULATING tumor DNA ,CELL-free DNA ,PANCREATIC tumors ,PROGNOSIS ,OVERALL survival - Abstract
Background: The diagnostic and prognostic clinical value of circulating tumor DNA (ctDNA) and cell-free DNA (cfDNA) in pancreatic malignancies are unclear. Herein, we aimed to perform a meta-analysis to evaluate ctDNA and cfDNA as potential diagnostic and prognostic biomarkers. Methods: PRISMA reporting guidelines were followed closely for conducting the current meta-analysis. The PubMed/Medline, Scopus, and Web of Science (WoS) databases were scanned in detail to identify eligible papers for the study. A quality assessment was performed in accordance with the REMARK criteria. The risk ratios (RRs) of the diagnostic accuracy of ctDNA compared to that of carbohydrate antigen 19.9 (CA 19.9) in all disease stages and the hazard ratios (HRs) of the prognostic role of ctDNA in overall survival (OS) were calculated with 95% confidence intervals (CIs). Results: A total of 18 papers were evaluated to assess the diagnostic accuracy and prognostic value of biomarkers related to pancreatic malignancies. The pooled analysis indicated that CA19.9 provides greater diagnostic accuracy across all disease stages than ctDNA or cfDNA (RR = 0.64, 95% CI: 0.50-0.82, p < 0.001). Additionally, in a secondary analysis focusing on prognosis, patients who were ctDNA-positive were found to have significantly worse OS (HR = 2.00, 95% CI: 1.51-2.66, p < 0.001). Conclusion: The findings of this meta-analysis demonstrated that CA19-9 still has greater diagnostic accuracy across all disease stages than KRAS mutations in ctDNA or cfDNA. Nonetheless, the presence of detectable levels of ctDNA was associated with worse patient outcomes regarding OS. There is a growing need for further research on this topic. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Area-level socioeconomic status is positively correlated with glioblastoma incidence and prognosis in the United States.
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Gorenflo, Maria P., Shen, Alan, Murphy, Erin S., Cullen, Jennifer, and Yu, Jennifer S.
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SOCIOECONOMIC status ,GLIOBLASTOMA multiforme ,PROGNOSIS ,OVERALL survival - Abstract
In the United States, an individual’s access to resources, insurance status, and wealth are critical social determinants that affect both the risk and outcomes of many diseases. One disease for which the correlation with socioeconomic status (SES) is less well-characterized is glioblastoma (GBM), a devastating brain malignancy. The aim of this study was to review the current literature characterizing the relationship between area-level SES and both GBM incidence and prognosis in the United States. A query of multiple databases was performed to identify the existing data on SES and GBM incidence or prognosis. Papers were filtered by relevant terms and topics. A narrative review was then constructed to summarize the current body of knowledge on this topic. We obtained a total of three papers that analyze SES and GBM incidence, which all report a positive correlation between area-level SES and GBM incidence. In addition, we found 14 papers that focus on SES and GBM prognosis, either overall survival or GBM-specific survival. Those studies that analyze data from greater than 1,530 patients report a positive correlation between area-level SES and individual prognosis, while those with smaller study populations report no significant relationship. Our report underlines the strong association between SES and GBM incidence and highlights the need for large study populations to assess SES and GBM prognosis to ideally guide interventions that improve outcomes. Further studies are needed to determine underlying socioeconomic stresses on GBM risk and outcomes to identify opportunities for intervention. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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23. The potential of kaempferol in digestive system tumors: recent advances and mechanistic insights.
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Hao, Xunxing, Ding, Meng, Chi, Chenyu, Xu, Xiaodong, Zhang, Xiaoyu, and Hu, Mingzhe
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DIGESTIVE organs ,INHIBITION of cellular proliferation ,OVERALL survival ,FLAVONOIDS ,METASTASIS ,PROPOLIS - Abstract
Digestive system neoplasms are a heterogeneous group of cancers characterized by diverse symptoms, complex diagnosis, and treatment. Prognosis is poor and influenced by multiple factors, making early detection and comprehensive treatment crucial for patient survival. Kaempferol, a flavonoid compound, has attracted attention due to its anti-tumor biological activity, holding promise as a potential drug for treating digestive system neoplasms. Derived from various plants such as cabbage, propolis, and grapefruit, this compound's anti-inflammatory, antioxidant, and other pharmacological effects have been confirmed. Research has found that kaempferol inhibits the occurrence and development of digestive system neoplasms by inducing apoptosis in cancer cells, inhibiting tumor cell proliferation, suppressing tumor metastasis and invasion, and enhancing the effects of other cancer treatment methods. This paper summarizes the role and mechanisms of kaempferol in the study of digestive system neoplasms, providing valuable insights for both scientists and clinical physicians engaged in this field. By detailing the various pathways through which kaempferol exerts its anticancer effects, the paper not only highlights its potential as a therapeutic agent but also opens avenues for further research into its applications. [ABSTRACT FROM AUTHOR]
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- 2024
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24. Electrochemotherapy in the Locoregional Treatment of Metastatic Colorectal Liver Metastases: A Systematic Review.
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Barbieri, Pierluigi, Posa, Alessandro, Lancellotta, Valentina, Madoff, David C., Maresca, Alessandro, Cornacchione, Patrizia, Tagliaferri, Luca, and Iezzi, Roberto
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COLORECTAL liver metastasis ,LIVER cancer ,DISEASE progression ,CANCER-related mortality ,OVERALL survival - Abstract
Background: The global incidence of secondary liver cancer is rising due to multiple risk factors, presenting significant challenges in public health. Similarly, colorectal cancer (CRC) remains a leading cause of cancer-related mortality with the development of frequent liver metastases. Surgical resection of CRC liver metastases is only suitable for a limited subset of patients, necessitating alternative nonsurgical treatments such as electrochemotherapy (ECT); Methods: This review adhered to the S.P.I.D.E.R. framework. Systematic searches of PubMed, Cochrane, and Scopus databases were conducted for studies published between 2003 and 2023, following PRISMA guidelines. Inclusion criteria were full-text clinical studies in English focusing on ECT-treated CRC liver metastases, excluding reviews, editorials, and non-clinical papers. The GRADE approach was utilized to assess evidence quality, considering study limitations, consistency, and other factors; Results: From 38 identified articles, 4 met the inclusion criteria, encompassing 78 patients and 128 treated lesions. The studies demonstrated variability in design and follow-up duration (3–11 months). Complete response (CR) rates ranged from 33.3% to 63.0%, while progression disease (PD) rates were high, ranging from 23.0% to 55.6%. Median overall survival (OS) spanned 11.3 to 29.0 months. No severe ECT-related complications were reported. Conclusions: ECT appears to be a safe and effective modality for the treatment of CRC liver metastases, especially for lesions unsuitable for other ablative techniques. Further prospective and randomized studies are essential to better define the role of ECT in managing CRC liver metastases and to compare its efficacy with other ablative methods. [ABSTRACT FROM AUTHOR]
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- 2024
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25. SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
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Wang, Shuo, Liu, Yuanning, Zhang, Hao, and Liu, Zhen
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GENE expression ,SQUAMOUS cell carcinoma ,SURVIVAL analysis (Biometry) ,FORECASTING ,OVERALL survival - Abstract
Cancer is one of the leading causes of deaths worldwide. Survival analysis and prediction of cancer patients is of great significance for their precision medicine. The robustness and interpretability of the survival prediction models are important, where robustness tells whether a model has learned the knowledge, and interpretability means if a model can show human what it has learned. In this paper, we propose a robust and interpretable model SurvConvMixer, which uses pathways customized gene expression images and ConvMixer for cancer short-term, mid-term and long-term overall survival prediction. With ConvMixer, the representation of each pathway can be learned respectively. We show the robustness of our model by testing the trained model on absolutely untrained external datasets. The interpretability of SurvConvMixer depends on gradient-weighted class activation mapping (Grad-Cam), by which we can obtain the pathway-level activation heat map. Then wilcoxon rank-sum tests are conducted to obtain the statistically significant pathways, thereby revealing which pathways the model focuses on more. SurvConvMixer achieves remarkable performance on the short-term, mid-term and long-term overall survival of lung adenocarcinoma, lung squamous cell carcinoma and skin cutaneous melanoma, and the external validation tests show that SurvConvMixer can generalize to external datasets so that it is robust. Finally, we investigate the activation maps generated by Grad-Cam, after wilcoxon rank-sum test and Kaplan–Meier estimation, we find that some survival-related pathways play important role in SurvConvMixer. [ABSTRACT FROM AUTHOR]
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- 2024
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26. Meta-analysis and systematic review of long-term oncological safety of immediate breast reconstruction in patients with locally advanced breast cancer
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Seabrook, Max, Navas, Ahamed SM, and Rao, Ahsan
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- 2025
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27. The Impasse on Overall Survival in Oncology Reimbursement Decision-Making: How Can We Resolve This?
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Michael Friedlander, Andrea Ferris, Michael P. Lux, William C N Dunlop, and Oriana Ciani
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DRUG APPROVAL ,medicine.medical_specialty ,business.industry ,Surrogate endpoint ,SURROGATE ENDPOINT ,MEDICAL ONCOLOGY ,UNCERTAINTY ,Treatment efficacy ,Patient benefit ,Quality of life (healthcare) ,DRUG APPROVAL, ENDPOINT DETERMINATION, MEDICAL ONCOLOGY, QUALITY OF LIFE, SURROGATE ENDPOINT, UNCERTAINTY ,QUALITY OF LIFE ,Oncology ,Cancer Management and Research ,medicine ,Overall survival ,Position paper ,ENDPOINT DETERMINATION ,Intensive care medicine ,business ,Set (psychology) ,Reimbursement ,Perspectives - Abstract
Mature overall survival (OS) data are often unavailable at the time of regulatory and reimbursement decisions for a new cancer treatment. For patients with early-stage cancers treated with potentially curative treatments, demonstrating an OS benefit may take years and may be confounded by subsequent lines of therapy or crossover to the investigational treatment. For patients with advanced-stage cancers, mature OS data may be available but difficult to interpret for similar reasons. There are strong opinions about approval and reimbursement in the absence of mature OS data, with concerns over delay in patient access set against concerns about uncertainty in long-term benefit. This position paper reflects our individual views as patient advocate, clinician or health economist on one aspect of this debate. We look at payer decisions in the absence of mature OS data, considering when and how non-OS trial outcomes could inform decision-making and how uncertainty can be addressed beyond the trial, supporting these views with evidence from the literature. We consider when it is reasonable for payers to expect or not expect mature OS data at the initial reimbursement decision (based on criteria such as cancer stage and treatment efficacy) acknowledging that there are settings in which mature OS data are expected. We propose flexible strategies for generating and appraising patient-relevant evidence, including context-relevant endpoints and quality of life measures, when survival rates are good and mature OS data are not expected. We note that fair reimbursement is important; this means valuing patient benefit as shown through prespecified endpoints and reappraising if there is ongoing uncertainty or failure to show a sustained benefit. We suggest that reimbursement systems continue to evolve to align with scientific advances, because innovation is only meaningful if readily accessible to patients. The proposed strategies have the potential to promote thorough assessment of potential benefit to patients and lead to timely access to effective medicines., Graphical Abstract
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- 2021
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28. The Influence of Inflammatory and Nutritional Status on the Long-Term Outcomes in Advanced Stage Ovarian Cancer.
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Bacalbasa, Nicolae, Petrea, Sorin, Gaspar, Bogdan, Pop, Lucian, Varlas, Valentin, Hasegan, Adrian, Gorecki, Gabriel, Martac, Cristina, Stoian, Marilena, Zgura, Anca, and Balescu, Irina
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RECEIVER operating characteristic curves ,T-test (Statistics) ,OVARIAN tumors ,LOGISTIC regression analysis ,PREOPERATIVE care ,CYTOREDUCTIVE surgery ,TREATMENT effectiveness ,RETROSPECTIVE studies ,GLASGOW Coma Scale ,DESCRIPTIVE statistics ,HOSPITALS ,CHI-squared test ,KAPLAN-Meier estimator ,NUTRITIONAL status ,INFLAMMATION ,TUMOR classification ,DATA analysis software ,BIOMARKERS ,C-reactive protein ,SERUM albumin ,OVERALL survival ,PROPORTIONAL hazards models - Abstract
Simple Summary: Achieving improved rates of overall survival remains a significant challenge in advanced-stage ovarian cancer; even if complete debulking is achieved, certain patients report poor results in terms of survival. Therefore, the aim of this paper is to investigate new prognostic markers that could point out which cases could benefit most from debulking surgery and which ones should be rather submitted to neoadjuvant therapies followed by debulking surgery. Background: Despite improving surgical techniques and achieving more often complete debulking procedures, certain patients with advanced-stage ovarian cancer still have a very poor prognosis. The aim of the current paper is to investigate whether inflammatory and nutritional status can predict the long-term outcomes of ovarian cancer patients. Methods: A retrospective analysis of 57 cases diagnosed with advanced-stage ovarian cancer submitted to surgery as first intent therapy was carried out. In all cases, the preoperative status was determined by calculating the CRP/albumin ratio, as well as the Glasgow score, the modified Glasgow score and the prognostic nutritional index. Results: Patients presenting higher values of the CRP/albumin ratio, with a higher Glasgow score, modified Glasgow score and prognostic nutritional index (PNI), were more frequently associated with incomplete debulking surgery, a higher peritoneal carcinomatosis index and poorer overall survival (20 months versus 9 months for the CRP/albumin ratio p = 0.011, 42 versus 27 versus 12 months for the Glasgow score p = 0.042, 50 versus 19 versus 12 months for the modified Glasgow score, p = 0.001, and 54 months versus 21 months, p = 0.011 for the prognostic nutritional index). Conclusions: A strong relationship between the nutritional and inflammatory status in advanced-stage ovarian cancer seems to exist. [ABSTRACT FROM AUTHOR]
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- 2024
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29. Factors associated with the local control of brain metastases: a systematic search and machine learning application.
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Kanakarajan, Hemalatha, De Baene, Wouter, Gehring, Karin, Eekers, Daniëlle B. P., Hanssens, Patrick, and Sitskoorn, Margriet
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BREAST ,MACHINE learning ,RANDOM forest algorithms ,STEREOTACTIC radiotherapy ,TUMOR treatment ,OVERALL survival - Abstract
Background: Enhancing Local Control (LC) of brain metastases is pivotal for improving overall survival, which makes the prediction of local treatment failure a crucial aspect of treatment planning. Understanding the factors that influence LC of brain metastases is imperative for optimizing treatment strategies and subsequently extending overall survival. Machine learning algorithms may help to identify factors that predict outcomes. Methods: This paper systematically reviews these factors associated with LC to select candidate predictor features for a practical application of predictive modeling. A systematic literature search was conducted to identify studies in which the LC of brain metastases is assessed for adult patients. EMBASE, PubMed, Web-of-Science, and the Cochrane Database were searched up to December 24, 2020. All studies investigating the LC of brain metastases as one of the endpoints were included, regardless of primary tumor type or treatment type. We first grouped studies based on primary tumor types resulting in lung, breast, and melanoma groups. Studies that did not focus on a specific primary cancer type were grouped based on treatment types resulting in surgery, SRT, and whole-brain radiotherapy groups. For each group, significant factors associated with LC were identified and discussed. As a second project, we assessed the practical importance of selected features in predicting LC after Stereotactic Radiotherapy (SRT) with a Random Forest machine learning model. Accuracy and Area Under the Curve (AUC) of the Random Forest model, trained with the list of factors that were found to be associated with LC for the SRT treatment group, were reported. Results: The systematic literature search identified 6270 unique records. After screening titles and abstracts, 410 full texts were considered, and ultimately 159 studies were included for review. Most of the studies focused on the LC of the brain metastases for a specific primary tumor type or after a specific treatment type. Higher SRT radiation dose was found to be associated with better LC in lung cancer, breast cancer, and melanoma groups. Also, a higher dose was associated with better LC in the SRT group, while higher tumor volume was associated with worse LC in this group. The Random Forest model predicted the LC of brain metastases with an accuracy of 80% and an AUC of 0.84. Conclusion: This paper thoroughly examines factors associated with LC in brain metastases and highlights the translational value of our findings for selecting variables to predict LC in a sample of patients who underwent SRT. The prediction model holds great promise for clinicians, offering a valuable tool to predict personalized treatment outcomes and foresee the impact of changes in treatment characteristics such as radiation dose. [ABSTRACT FROM AUTHOR]
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- 2024
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30. Spontaneous Tumor Regression and Reversion: Insights and Associations with Reduced Dietary Phosphate.
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Brown, Ronald B.
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CANCER relapse ,FOOD consumption ,AUTOPHAGY ,PROTEIN kinases ,PHOSPHATES ,CELL proliferation ,CELL physiology ,DISEASE remission ,CANCER patients ,PHOSPHATASES ,CELL lines ,ANOREXIA nervosa ,WESTERN diet ,OVERALL survival - Abstract
Simple Summary: In spontaneous tumor regression, tumors shrink and disappear without conventional treatments. This phenomenon challenges the view that cancer is an irreversible genetic disease and that the only treatment option is to kill cancer cells or surgically remove them. In tumor reversion, cancer cells have been shown to return to normal cells when they are transplanted into a normal cellular environment. Additionally, people consuming a Western diet ingest excessive amounts of dietary phosphate, and a dysregulated oversupply of phosphate can be transported into cells, stimulating the cellular growth that forms tumors. Based on reviewed evidence, this paper proposes that reducing excessive dietary phosphate potentially activates tumor regression and reversion, as components of cancer cells are self-digested. Furthermore, fevers and fasting-mimicking diets are associated with tumor regression, which also may be initiated by reduced phosphate intake. Studies are needed to test dietary phosphate reduction in tumor regression and reversion to improve cancer patient survival. Tumors that spontaneously shrink from unknown causes in tumor regression, and that return to normal cells in tumor reversion, are phenomena with the potential to contribute new knowledge and novel therapies for cancer patient survival. Tumorigenesis is associated with dysregulated phosphate metabolism and an increased transport of phosphate into tumor cells, potentially mediated by phosphate overload from excessive dietary phosphate intake, a significant problem in Western societies. This paper proposes that reduced dietary phosphate overload and reregulated phosphate metabolism may reverse an imbalance of kinases and phosphatases in cell signaling and cellular proliferation, thereby activating autophagy in tumor regression and reversion. Dietary phosphate can also be reduced by sickness-associated anorexia, fasting-mimicking diets, and other diets low in phosphate, all of which have been associated with tumor regression. Tumor reversion has also been demonstrated by transplanting cancer cells into a healthy microenvironment, plausibly associated with normal cellular phosphate concentrations. Evidence also suggests that the sequestration and containment of excessive phosphate within encapsulated tumors is protective in cancer patients, preventing the release of potentially lethal amounts of phosphate into the general circulation. Reducing dietary phosphate overload has the potential to provide a novel, safe, and effective reversion therapy for cancer patients, and further research is warranted. [ABSTRACT FROM AUTHOR]
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- 2024
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31. The survival impact of palliative radiotherapy on synchronous metastatic pancreatic ductal adenocarcinoma: metastatic site can serve for radiotherapy-decision
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Biaoxiang Xu, Yuan Zhou, Qian Pei, Fengbo Tan, Lilan Zhao, Cenap Güngör, Dan Wang, Yuqiang Li, Wenxue Liu, and Zhongyi Zhou
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Oncology ,endocrine system diseases ,overall survival ,metastatic site ,PDAC ,digestive system diseases ,radiotherapy ,Research Paper ,SEER database - Abstract
Background: The metastatic site seems to represent a malignancy with a different biological characteristic and is an important prognostic factor in metastatic pancreatic ductal adenocarcinoma (mPDAC). Palliative radiotherapy is a therapeutic option, and usually used for pain management in the treatment of mPDAC. The real-world effect of radiotherapy on the survival outcomes of mPDAC patients might do exist and is worth exploring. Methods: Data from the Surveillance, Epidemiology, and End Results (SEER) was extracted to identify mPDAC diagnosed in the periods of 2010-2016. The statistical methods included Pearson's chi-square test, Log-rank test, Cox regression model and propensity score matching (PSM). Results: Radiotherapy was able to improve the overall survival of PDAC with liver metastasis (p
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- 2022
32. The Association between Pretreatment anemia and Overall Survival in Advanced Non-small Cell lung Cancer: A Retrospective Cohort Study Using Propensity Score Matching
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Yucong Huang, Cuiyun Su, Huiqin Jiang, Feiwen Liu, Qitao Yu, and Shaozhang Zhou
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Oncology ,propensity score matching ,overall survival ,prognosis ,advanced NSCLC ,anemia ,Research Paper - Abstract
Background: The purpose of this study was to investigate whether pretreatment anemia was an independent risk factor for survival in patients with advanced non-small cell lung cancer (NSCLC) after adjusting for other covariates. Methods: We used propensity score matching (PSM) to minimize the influence of confounding factors and used χ2 (categorical variables), Student's t-test (normal distribution), or Mann-Whitney U test (skewed distribution) to analyze the differences among the Hb groups. Cox regression and Kaplan-Meier analyses were used to assess the association between anemia and survival. P values < 0.05 (two-sided) were considered statistically significant. Results: The average age of the 758 selected participants was 58.2±11 years, and 210 patients (27.7%) had anemia. In the multivariate analysis, anemia was associated with a poor prognosis in the unmatched cohort (Hazards ratio (HR)=1.3, 95% (confidence interval (CI): 1.1-1.6; p= 0.008), and the matched cohort (HR=1.7, 95% CI: 1.3-2.3; p
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- 2022
33. Cutaneous Nevoid Melanoma: A Retrospective Study on Clinico-Pathological Characteristics, with a Focus on Dermoscopic Features and Survival Analysis.
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Russo, Irene, Sartor, Emma, Cappellesso, Rocco, Salmaso, Roberto, Del Fiore, Paolo, Sartor, Gino, Vecchiato, Antonella, Alaibac, Mauro, and Mocellin, Simone
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MELANOMA prognosis ,MELANOMA diagnosis ,SENTINEL lymph node biopsy ,SKIN tumors ,MELANOMA ,ACADEMIC medical centers ,RESEARCH funding ,NEVUS ,RETROSPECTIVE studies ,DERMOSCOPY ,SURVIVAL analysis (Biometry) ,PATHOGENESIS ,OVERALL survival ,HYPERPIGMENTATION - Abstract
Simple Summary: Nevoid melanoma is a rare melanoma subtype that closely resembles a common nevus clinically and histologically. For this reason, diagnosis is easily missed. Both dermatologists and pathologists should be aware of this entity since its recognition might avoid severe consequences for the patient and medicolegal issues. Only a few papers on clinical and dermoscopic characteristics of nevoid melanoma are available. This study analyzes the clinical and pathological characteristics of nevoid melanoma in a population of patients affected by this rare subtype. It compares the prognosis and survival of these patients to data from classical melanoma featured in the literature. Additionally, by analyzing available dermoscopic images of nevoid melanoma, we aim to identify dermoscopic features that might help clinicians to suspect nevoid melanoma, reducing misdiagnosis. Background: Diagnosis of nevoid melanoma (NeM) is often difficult because NeM closely resembles a common nevus clinically and histologically. Methods: A retrospective study was conducted on 110 patients diagnosed with and/or treated for primary nevoid melanoma at the Veneto Institute of Oncology and at the University Hospital of Padua from August 1999. Results: Mean Breslow thickness was of 1.4 mm. Sentinel lymph node biopsy was conducted in nearly half of the patients, and positivity was detected in 16.7% of them. Twenty-four clinical and 23 dermoscopic pictures were collected. Papular and macular lesions prevailed over nodular and plaque-type lesions. Different hues of brown, pink, and red color were most represented. Twenty nevus-like NeMs and four multicomponent-pattern NeMs were observed. The Most frequent dermoscopic patterns for nevus-like NeM were atypical pigmented reticulum, irregular globules and dots, and hyperpigmented blotches. Atypical vessels, asymmetric peripheric striae, blue-white veil, and areas of regression were less frequent and prevailed in multicomponent pattern NeM. A structureless pattern was also featured. Many patients in the series had multiple melanomas. However, none of them had numerous multiple nevoid melanomas. Conclusions: NeM should not be regarded as a separate biological entity from classical melanoma, and the same histological and clinical prognostic factors apply to NeM. Clinically and dermoscopically, it often resembles benign nevi, although some clues such as evolution and some dermoscopic patterns could suggest malignancy. Clinical suspicion might prove crucial to further pathological analysis and recognition. [ABSTRACT FROM AUTHOR]
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- 2025
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34. TP53 oncogenic variants as prognostic factors in individuals with glioblastoma: a systematic review and meta-analysis.
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Esperante, Diego, Galicia, Kena Daza, Rivas-Cuervo, Kalu Gabriel, Cacho-Díaz, Bernardo, Trejo-Becerril, Catalina, Taja-Chayeb, Lucia, Aboud, Orwa, Carlos-Escalante, José Alberto, and Wegman-Ostrosky, Talia
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OVERALL survival ,PROGRESSION-free survival ,BRAIN tumors ,PROGNOSIS ,GLIOBLASTOMA multiforme - Abstract
Background: This systematic review and meta-analysis investigated the relationship between somatic TP53 oncogenic variants and prognosis, specifically with overall survival (OS) and progression-free survival (PFS) in patients diagnosed with supratentorial glioblastoma. Methods: We included longitudinal studies and clinical trials involving a minimum of 40 adult participants diagnosed with supratentorial glioblastoma, wherein the status of TP53 variants was assessed. We conducted searches in multiple databases. We assessed bias risk using a modified version of the Quality in Prognosis Studies tool, and the certainty of evidence was evaluated following the principles of the GRADE approach. Results and conclusion: This study encompassed 23 papers involving 2,555 patients, out of which 716 had reported oncogenic variants. TP53 oncogenic variants were associated with a reduced likelihood of 1-year survival (OR 0.52, 95% CI 0.29–0.94). However, our analysis did not reveal any significant impact of TP53 variants on overall survival, progression-free survival, or 2-year survival. Therefore, this comprehensive analysis demonstrates that the presence of genetic variants in TP53 does not provide useful information for the prognosis of glioblastoma. Systematic review registration: https://www.crd.york.ac.uk/prospero/ , identifier CRD42021289496. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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35. A data mining based clinical decision support system for survival in lung cancer
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Pontes, Beatriz, Núñez, Francisco, Rubio, Cristina, Moreno, Alberto, Nepomuceno, Isabel, Moreno, Jesús, Cacicedo, Jon, Praena-Fernandez, Juan Manuel, Escobar Rodriguez, German Antonio, Parra, Carlos, Delgado León, Blas David, Rivin Del Campo, Eleonor, Couñago, Felipe, Riquelme, Jose, Lopez Guerra, Jose Luis, Praena-Fernandez, Juan, Escobar Rodriguez, German, Delgado León, Blas, Lopez Guerra, Jose, Service d'oncologie-radiothérapie [CHU Tenon], CHU Tenon [AP-HP], Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Biomedicine Institute of Sevilla [Seville, Spain], Universidad de Sevilla. Departamento de Lenguajes y Sistemas Informáticos, Instituto de Salud Carlos III, Junta de Andalucía, and Ministerio de Economía y Competitividad (MINECO). España
- Subjects
Survival ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Clinical decision support system ,computer.software_genre ,survival ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Overall survival ,Radiology, Nuclear Medicine and imaging ,In patient ,Lung cancer ,Data mining ,business.industry ,Significant difference ,data mining ,Guideline ,Prognosis ,medicine.disease ,3. Good health ,lung cancer ,clinical decision support system ,Oncology ,030220 oncology & carcinogenesis ,prognosis ,Non small cell ,business ,computer ,Research Paper - Abstract
Background: A clinical decision support system (CDSS) has been designed to predict the outcome (overall survival) by extracting and analyzing information from routine clinical activity as a complement to clinical guidelines in lung cancer patients. Materials and methods: Prospective multicenter data from 543 consecutive (2013–2017) lung cancer patients with 1167 variables were used for development of the CDSS. Data Mining analyses were based on the XGBoost and Generalized Linear Models algorithms. The predictions from guidelines and the CDSS proposed were compared. Results: Overall, the highest (> 0.90) areas under the receiver-operating characteristics curve AUCs for predicting survival were obtained for small cell lung cancer patients. The AUCs for predicting survival using basic items included in the guidelines were mostly below 0.70 while those obtained using the CDSS were mostly above 0.70. The vast majority of comparisons between the guideline and CDSS AUCs were statistically significant (p < 0.05). For instance, using the guidelines, the AUC for predicting survival was 0.60 while the predictive power of the CDSS enhanced the AUC up to 0.84 (p = 0.0009). In terms of histology, there was only a statistically significant difference when comparing the AUCs of small cell lung cancer patients (0.96) and all lung cancer patients with longer (≥ 18 months) follow up (0.80; p < 0.001). Conclusions: The CDSS successfully showed potential for enhancing prediction of survival. The CDSS could assist physicians in formulating evidence-based management advice in patients with lung cancer, guiding an individualized discussion according to prognosis. Instituto de Salud Carlos III PI16/02104 Junta de Andalucía PIN-0476-2017 Ministerio de Economía y Competitividad FPAP13-1E-2429
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- 2021
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36. Identification and in vitro validation of prognostic lncRNA signature in head and neck squamous cell carcinoma
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Wang, Jian, Bian, Qinjiang, Liu, Jialin, and Moming, Adili
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Squamous Cell Carcinoma of Head and Neck ,Gene Expression Profiling ,overall survival ,Reproducibility of Results ,Bioengineering ,General Medicine ,head and neck squamous cell carcinoma ,Applied Microbiology and Biotechnology ,Gene Expression Regulation, Neoplastic ,Cell Movement ,Head and Neck Neoplasms ,Cell Line, Tumor ,lncrnas ,Humans ,RNA, Long Noncoding ,prognosis ,tcga ,Algorithms ,TP248.13-248.65 ,Research Article ,Research Paper ,Cell Proliferation ,Biotechnology - Abstract
Long non-coding RNAs (lncRNAs) are promising cancer prognostic markers. However, the clinical significance of lncRNA signatures in evaluating overall survival (OS) outcomes of head and neck squamous cell carcinoma (HNSCC) has not been explored. This study aimed to assess the significance of lncRNA in HNSCC and to develop a lncRNA signature related to OS in HNSCC. LncRNA expression matrices were retrieved from the Cancer Genome Atlas (TCGA) data. Least Absolute Shrinkage and Selection of the Operator (LASSO), univariate and multivariate Cox regression were used for establishing a prognostic model. In vitro experiments were carried out to demonstrate the biological role of lncRNA. A prognosis model based on 7 DElncRNAs was finally established.The patients were then divided into high-risk and low-risk groups. Relative to the low-risk group, overall survival times for patients in the high-risk group were significantly low (P=2.466e−07). Risk score remained an independent prognostic factor in univariate (HR=1.329, 95%CI=1.239−1.425, p
- Published
- 2021
37. Routine blood biochemical biomarkers in amyotrophic lateral sclerosis: Systematic review and cohort analysis.
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Nona, Robert J., Henderson, Robert D., and Mccombe, Pamela A.
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AMYOTROPHIC lateral sclerosis , *CREATINE kinase , *OVERALL survival , *RECEIVER operating characteristic curves , *SURVIVAL analysis (Biometry) - Abstract
Abstract
Introduction : Blood biochemical biomarkers, including urate, creatinine, albumin, and creatine kinase, have been shown to be useful in ALS. To provide further information about the roles of these four biomarkers roles we performed a systematic review. In addition, we also performed a new study of the role of these biomarkers in predicting survival, using data from our local ALS cohort.Methods : (1) Using established databases and other sources, we searched for papers about the use of urate, creatinine, albumin, and creatine kinase as biomarkers in ALS. Included articles were reviewed for information about biomarker levels in ALS and controls, association with markers of functional decline, and survival. (2) For our local ALS cohort, we performed survival analysis, Cox-proportionate-hazard ratio and ROC curves to investigate the use of these biomarkers in predicting survival.Results : (1) For systematic review, 104 papers were included. There was some variability in the findings. For urate, there was evidence of decreased levels in ALS, with higher levels associated ith longer survival. For creatinine, there was evidence of decreased levels in ALS, and higher levels correlated with longer survival. For albumin, some reports of reduced levels in ALS, but no consistent association with survival. For creatine kinase, some reports of increased levels in ALS, with inconsistent association with survival. (2) For the local ALS cohort there was evidence that urate and creatinine were associated with survival, but no significant association with survival. There was less evidence for albumin and CK.Discussion : This study provides support for further studies of these readily available biochemical measurement as bioamerkers in ALS. [ABSTRACT FROM AUTHOR]- Published
- 2024
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38. Surgical Treatment and Targeted Therapy for a Large Metastatic Malignant Peripheral Nerve Sheath Tumor: A Case Report and Literature Review.
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Skórka, Patryk, Kordykiewicz, Dawid, Ilków, Andrzej, Ptaszyński, Konrad, Wójcik, Janusz, Skórka, Wiktoria, and Wojtyś, Małgorzata Edyta
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SCHWANNOMAS ,NEUROFIBROMATOSIS 1 ,POSITRON emission tomography computed tomography ,OVERALL survival ,SURGICAL excision ,LUNGS - Abstract
Neurofibromatosis type 1 (NF1) significantly increases the risk of malignant peripheral nerve sheath tumors (MPNST), a rare and aggressive malignancy for which treatment is clinically challenging. This paper presents the case of a 24-year-old male with an NF1 who developed MPNST with lung metastases. Due to the limited effectiveness of systemic therapy in the treatment of MPNST, the patient underwent radical surgical resection and radiotherapy. Pathological evaluation confirmed high-grade MPNST, and PET-CT imaging revealed further metastatic progression. The treatment results for our patient are compared with those of other patients with NF1 who also developed MPNST with lung metastases in the literature. The findings suggest the need for further research into personalized treatment strategies that may improve prognosis and overall survival in patients with NF1 and MPNST, with immunotherapy being a promising therapeutic option. [ABSTRACT FROM AUTHOR]
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- 2024
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39. The Role of Cardiac Troponin and Other Emerging Biomarkers Among Athletes and Beyond: Underlying Mechanisms, Differential Diagnosis, and Guide for Interpretation.
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Celeski, Mihail, Segreti, Andrea, Crisci, Filippo, Cricco, Riccardo, Piscione, Mariagrazia, Di Gioia, Giuseppe, Nusca, Annunziata, Fossati, Chiara, Pigozzi, Fabio, Ussia, Gian Paolo, Solaro, Ross John, and Grigioni, Francesco
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ATHLETES' health ,HEART injuries ,OVERALL survival ,TROPONIN ,HEART failure - Abstract
Cardiovascular (CV) disease remains the leading cause of morbidity and mortality worldwide, highlighting the necessity of understanding its underlying molecular and pathophysiological pathways. Conversely, physical activity (PA) and exercise are key strategies in reducing CV event risks. Detecting latent CV conditions in apparently healthy individuals, such as athletes, presents a unique challenge. The early identification and treatment of CV disorders are vital for long-term health and patient survival. Cardiac troponin is currently the most commonly used biomarker for assessing CV changes in both athletes and the general population. However, there remains considerable debate surrounding the mechanisms underlying exercise-induced troponin elevations and its release in non-ischemic contexts. Thus, there is a pressing need to identify and implement more sensitive and specific biomarkers for CV disorders in clinical practice. Indeed, research continues to explore reliable biomarkers for evaluating the health of athletes and the effectiveness of physical exercise. It is essential to analyze current evidence on troponin release in non-ischemic conditions, post-strenuous exercise, and the complex biological pathways that influence its detection. Furthermore, this study summarizes current research on cytokines and exosomes, including their physiological roles and their relevance in various CV conditions, especially in athletes. In addition, this paper gives special attention to underlying mechanisms, potential biomarkers, and future perspectives. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Prostate-specific antigen and health-related quality of life in individuals with advanced prostate cancer treated with apalutamide: a plain language summary of the SPARTAN and TITAN studies.
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Karsh, Lawrence I., Bevans, Katherine B., Saad, Fred, Chung, Byung Ha, Oudard, Stéphane, Brookman-May, Sabine D., McCarthy, Sharon A., Smith, Matthew R., Chi, Kim N., Small, Eric J., and Agarwal, Neeraj
- Abstract
What is this summary about? This is a summary of a paper that describes the results of the SPARTAN and TITAN studies, which looked at whether a treatment called apalutamide can help treat individuals with advanced prostate cancer. The SPARTAN study included 1207 participants with nonmetastatic castration-resistant prostate cancer (or nmCRPC). The TITAN study included 1052 participants with metastatic castration-sensitive prostate cancer (or mCSPC). Treatment with apalutamide was compared with treatment with placebo. In both studies, all participants were also given androgen deprivation therapy (or ADT), which has been used for many years for the treatment of prostate cancer. The results showed that treatment with apalutamide plus ADT increased participants' survival time while their health-related quality of life stayed the same, compared with placebo plus ADT. Also, apalutamide plus ADT increased the length of time that the cancer did not spread to other parts of the body (metastasize) or did not continue to grow. In both studies, treatment with apalutamide plus ADT was associated with a deep decline in blood prostate-specific antigen (or PSA) levels (called a deep PSA decline). This additional analysis of the SPARTAN and TITAN studies was performed to understand whether the deep PSA decline in participants who received apalutamide plus ADT was linked to their overall health-related quality of life. What were the results of the additional analysis? In participants who received apalutamide plus ADT, those who achieved a deep PSA decline after the start of treatment had a greater chance that their health-related quality of life would remain stable. When participants achieved a deep PSA decline at 3 months after the start of treatment, the benefit to their health-related quality of life, including physical wellbeing, was even greater. What do these results mean for individuals with advanced prostate cancer? For individuals with advanced prostate cancer, it is important to monitor both PSA decline and any impacts on health-related quality of life. These results will help doctors and other healthcare professionals have a better understanding of patients' cancer experience and the impact of their treatment. Clinical Trial Registration:NCT01946204 (SPARTAN) and, NCT02489318 (TITAN) (ClinicalTrials.gov) [ABSTRACT FROM AUTHOR]
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- 2024
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41. A network meta-analysis of the effectiveness of different basic preconditioning regiments in allogeneic hematopoietic stem cell transplantation.
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Wu, Si-ting, Wang, Chun-li, Wang, Li, and Zhang, Cai-yun
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HEMATOPOIETIC stem cell transplantation ,OVERALL survival ,RANDOMIZED controlled trials ,INFLUENZA ,ODDS ratio - Abstract
Objective: To investigate and compare the effects of basic preconditioning regimens Bu/Cy, Cy/TBI and Flu/Bu for the treatment of patients in allogeneic hematopoietic stem cell transplantation. Methods: It comprised exploring the published literature in the databases of PubMed, EMBASE, Cochrane Library, and Web of Science, using suitable keywords pertaining to various basic pretreatments Bu/Cy, Cy/TBI, and Flu/Bu, prior to allogeneic hematopoietic stem cell transplantation, and then extracting the searched outcome indicators of Overall Survival (OS) and survival (herein represented as OS and survival). Further, the results were estimated with meta-analysis using R, where the incidence of GVHD was reported in odds ratio (OR) with its 95% confidence interval (95%CI). Results and Discussion: A total of 14 papers were included in this study, including 1436 cases were treated with Bu/Cy, 1816 cases with Cy/TBI, and 549 cases with Flu/Bu in the preconditioning regimen. After OS was the outcome pooled, compared with Flu/Bu in the preconditioning group, the results (Cy/TBI HR = 1.12 (95% Cl:1.04,1.61), Bu/Cy HR = 1.24 (95% Cl. 1.13,2.06)) showed that Flu/Bu preconditioning regimen significantly improved the overall survival rate of allogeneic HSCT patients. With the incidence of GVHD as the outcome summary, compared with Flu/Bu in the pretreatment group, the results (Cy/TBI HR = 1.24 (95% Cl:1.12, 1.82), Bu/Cy HR = 1.14 (95% Cl. 1.03, 2.12)) indicated that Flu/Bu in the pretreatment regimen group also significantly reduced the incidence of GVHD after allogeneic HSCT. Conclusion: Patients who received the basal preconditioning regimen Flu/Bu before allogeneic hematopoietic stem cell transplantation had the lowest hazard ratio for overall survival (OS) development. This indicates that the use of the basal preconditioning regimen Flu/Bu for the treatment of patients was the most effective, although the quality of the studies included needs to be confirmed by high-quality randomized controlled trials. [ABSTRACT FROM AUTHOR]
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- 2024
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42. Melatonin increases overall survival of prostate cancer patients with poor prognosis after combined hormone radiation treatment
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O A Bogomolov, Irina V. Chepurnaya, Natalia Yu Neklasova, G. M. Zharinov, and Vladimir N. Anisimov
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0301 basic medicine ,Drug ,Oncology ,medicine.medical_specialty ,Multivariate analysis ,media_common.quotation_subject ,overall survival ,melatonin ,medicine.disease_cause ,Melatonin ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,Internal medicine ,medicine ,media_common ,business.industry ,Retrospective cohort study ,poor prognosis ,medicine.disease ,prostate cancer ,030104 developmental biology ,Tumor progression ,030220 oncology & carcinogenesis ,Carcinogenesis ,business ,Hormone ,medicine.drug ,Research Paper - Abstract
Background: The antitumor and immunomodulating activities of melatonin are widely known. These activities are based upon the multifactorial mechanism of action on various links of carcinogenesis. In the present paper, the long-term results of the clinical use of melatonin in the combined treatment of patients with prostate cancer of various risk groups were evaluated. Materials and Methods: A retrospective study included 955 patients of various stages of prostate cancer (PCa) who received combined hormone radiation treatment from 2000 to 2019. Comprehensive statistical methods were used to analyze the overall survival rate of PCa patients treated with melatonin in various prognosis groups. Results: The overall survival rate of PCa patients with favorable and intermediate prognoses treated or not treated with melatonin was not statistically significantly different. In the poor prognosis group, the median overall survival in patients taking the drug was 153.5 months versus 64.0 months in patients not using it (p < 0.0001). The 5-year overall survival rates in the research and control groups were 66.8 ± 1.9 and 53.7 ± 2.6 (p < 0.0001) respectively. In a multivariate analysis, melatonin administration proved to be an independent prognostic factor and reduced the risk of death of PCa patients by more than twice (p < 0.0001). Conclusions: The multicomponent antitumor effect of melatonin is fully realized and clearly demonstrated in treatment of PCa patients with poor prognosis with a set of unfavorable factors of the tumor progression.
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- 2020
43. Dissecting expression profiles of gastric precancerous lesions and early gastric cancer to explore crucial molecules in intestinal‐type gastric cancer tumorigenesis
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Yajing Zhang, Xinghua Lu, Shujun Cheng, Chengli Zhang, Xi Wu, Guijun Fei, Aiming Yang, Xuebing Di, Jiaqi Wang, and Lin Feng
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0301 basic medicine ,Microarray ,Inflammation ,medicine.disease_cause ,gastric precancerous lesions ,Disease-Free Survival ,Pathology and Forensic Medicine ,03 medical and health sciences ,stemness ,0302 clinical medicine ,Lymphocytes, Tumor-Infiltrating ,Stomach Neoplasms ,Overall survival ,Tumor Microenvironment ,Medicine ,Humans ,early gastric cancer ,tumor hallmarks ,Pathological ,Intestinal type ,Intraepithelial neoplasia ,Original Paper ,business.industry ,immune infiltration ,Gene Expression Profiling ,Macrophages ,Original Papers ,Early Gastric Cancer ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Cell Transformation, Neoplastic ,030220 oncology & carcinogenesis ,Cancer research ,Neoplastic Stem Cells ,prognosis ,medicine.symptom ,Neoplasm Grading ,business ,Carcinogenesis ,Transcriptome ,Precancerous Conditions ,gastric tumorigenesis ,Carcinoma in Situ - Abstract
Intestinal‐type gastric cancer (IGC) has a clear and multistep histological evolution. No studies have comprehensively explored gastric tumorigenesis from inflammation through low‐grade intraepithelial neoplasia (LGIN) and high‐grade intraepithelial neoplasia (HGIN) to early gastric cancer (EGC). We sought to investigate the characteristics participating in IGC tumorigenesis and identify related prognostic information within the process. RNA expression profiles of 94 gastroscopic biopsies from 47 patients, including gastric precancerous lesions (GPL: LGIN and HGIN), EGC, and paired controls, were detected by Agilent Microarray. During IGC tumorigenesis from LGIN through HGIN to EGC, the number of activity‐changed tumor hallmarks increased. LGIN and HGIN had similar expression profiles when compared to EGC. We observed an increase in the stemness of gastric epithelial cells in LGIN, HGIN, and EGC, and we found 27 consistent genes that might contribute to dedifferentiation, including five driver genes. Remarkably, we perceived that the immune microenvironment was more active in EGC than in GPL, especially in the infiltration of lymphocytes and macrophages. We identified a five‐gene signature from the gastric tumorigenesis process that could independently predict the overall survival and disease‐free survival of GC patients (log‐rank test: p 300) and by comparing with two established prognostic signatures in GC. In conclusion, during IGC tumorigenesis, cancer‐like changes occur in LGIN and accumulate in HGIN and EGC. The immune microenvironment is more active in EGC than in LGIN and HGIN. The identified signature from the tumorigenesis process has robust prognostic significance for GC patients. © 2020 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of Pathological Society of Great Britain and Ireland.
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- 2020
44. Novel circular RNA circATRNL1 accelerates the osteosarcoma aerobic glycolysis through targeting miR-409-3p/LDHA
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Lili Cao, Lina Wang, Tao Wei, and Quanbin Zhang
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Male ,musculoskeletal diseases ,Mice, Nude ,circular rna ,Bioengineering ,Biology ,Models, Biological ,Applied Microbiology and Biotechnology ,Circular RNA ,Cell Line, Tumor ,osteosarcoma ,medicine ,Overall survival ,Animals ,Humans ,Glycolysis ,aerobic glycolysis ,neoplasms ,Mice, Inbred BALB C ,Base Sequence ,L-Lactate Dehydrogenase ,RNA, Circular ,General Medicine ,Prognosis ,medicine.disease ,Aerobiosis ,In vitro ,MicroRNAs ,circatrnl1 ,Anaerobic glycolysis ,Cancer research ,Osteosarcoma ,Female ,ldha ,TP248.13-248.65 ,Research Article ,Research Paper ,Biotechnology - Abstract
In recent researches, circular RNAs (circRNAs) have been shown to exert critical functions in osteosarcoma biology. Nevertheless, the contribution of circRNAs to osteosarcoma remains largely unclear. Results indicated that expression of circATRNL1 was higher in osteosarcoma tissues and cells. The high-expression of circATRNL1 was significantly correlated with aggressive features and acted as an independent risk factor for osteosarcoma patients’ overall survival. Functionally, our findings demonstrate that circATRNL1 promotes the osteosarcoma aerobic glycolysis in vitro. Mechanistically, circATRNL1 up-regulated the expression level of LDHA, which was also targeted by miR-409-3p. Therefore, circATRNL1 exerted the accelerative roles of osteosarcoma aerobic glycolysis through miR-409-3p/LDHA axis. In conclusion, circATRNL1 promoted osteosarcoma progression by enhancing glycolysis via circATRNL1/miR-409-3p/LDHA axis, which may inspire a novel therapeutic target for osteosarcoma.
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- 2021
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45. A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
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Lihua Qiu, Lanfang Li, Zizheng Wu, Xue Han, Xianming Liu, Shiyong Zhou, Zhengzi Qian, Huilai Zhang, Xianhuo Wang, and Qingpei Guan
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Oncology ,Genetic Markers ,Aging ,medicine.medical_specialty ,gene expression omnibus database ,overall survival ,diffuse large B-cell lymphoma ,Antigen ,Internal medicine ,MHC class I ,medicine ,Biomarkers, Tumor ,Humans ,prognostic signature ,Tumor microenvironment ,biology ,Antigen processing ,T-cell receptor ,Reproducibility of Results ,Cell Biology ,medicine.disease ,Prognosis ,Lymphoma ,Gene Expression Regulation, Neoplastic ,Cohort ,biology.protein ,immune-related genes ,Lymphoma, Large B-Cell, Diffuse ,Diffuse large B-cell lymphoma ,Research Paper - Abstract
Diffuse large B-cell lymphoma (DLBCL) presents a great clinical challenge and has a poor prognosis, with immune-related genes playing a crucial role. We aimed to develop an immune-related prognostic signature for improving prognosis prediction in DLBCL. Samples from the GSE31312 dataset were randomly allocated to discovery and internal validation cohorts. Univariate Cox, random forest, LASSO regression and multivariate Cox analyses were utilized to develop a prognostic signature, which was verified in the internal validation cohort, entire validation cohort and external validation cohort (GSE10846). The tumor microenvironment was investigated using the CIBERSORT and ESTIMATE tools. Gene set enrichment analysis (GSEA) was further applied to analyze the entire GSE31312 cohort. We identified four immune-related genes (CD48, IL1RL, PSDM3, RXFP3) significantly associated with overall survival. Based on discovery and validation cohort analyses, this four-gene signature could classify patients into high- and low-risk groups, with significantly different prognoses. Activated memory CD4 T cells and activated dendritic cells were significantly decreased in the high-risk group, and these patients had lower immune scores. GSEA revealed enrichment of signaling pathways, such as T cell receptor, antigen receptor-mediated, antigen processing and presentation of peptide antigen via MHC class I, in the low-risk group. In conclusion, a robust signature based on four immune-related genes was successfully constructed for predicting prognosis in DLBCL patients.
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- 2021
46. Outcomes and computed tomography radiomic features extraction in soft tissue sarcomas treated with neoadjuvant radiation therapy
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Javier González-Viguera, Alicia Lozano, and Gabriel Reynés-Llompart
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Soft tissue ,Surgical wound healing ,Computed tomography ,Radiation therapy ,Oncology ,Radiomics ,medicine ,Overall survival ,Radiology, Nuclear Medicine and imaging ,Progression-free survival ,Radiology ,Prospective cohort study ,business ,Research Paper - Abstract
Background: The aim of the study was to evaluate the management, toxicity and treatment responses of patients treated with neoadjuvant radiotherapy (NART) for soft tissue sarcomas (STS) and to analyse the potential of radiomic features extracted from computed tomography (CT) scans. Materials and methods: This is a retrospective and exploratory study with patients treated between 2006 and 2019. Acute and chronic toxicities are evaluated. Local progression free survival (LPFS), distant progression free survival (DPFS) and overall survival (OS) are analysed. Radiomic features are obtained. Results: A total of 25 patients were included. Median follow-up is 24 months. Complications in surgical wound healing were observed in 20% of patients, chronic fibrosis was documented as grade 1 (12%) and grade 2 (12%) without grade 3 events and chronic lymphedema as grade 1 (8%) and grade 2 (20%) without grade 3 events. Survival variables were LPFS 76%, DPFS 62% and OS 67.2% at 2-year follow-up. CT radiomics features were associated significantly with local control (GLCM-correlation), systemic control (HUmin, HUpeak, volume, GLCM-correlation and GLZLM-GLNU) and OS (GLZLM-SZE). Conclusions: STS treated with NART in our centre associate with an OS and toxicity comparable to other series. CT radiomic features have a prognosis potential in STS risk stratification. The results of our study may serve as a motivation for future prospective studies with a greater number of patients.
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- 2021
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47. Safety and initial efficacy of ablative radioembolization for the treatment of unresectable intrahepatic cholangiocarcinoma
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Kabir Mody, Beau Toskich, Sunil Krishnan, Seyed Ali Montazeri, Zlatko Devcic, John McKinney, Charles Ritchie, Carlos A. Padula, Ricardo Paz-Fumagalli, Jacob M. Core, Andrew R. Lewis, and Gregory T. Frey
- Subjects
radioembolization ,Yttrium-90 ,Retrospective review ,medicine.medical_specialty ,Performance status ,business.industry ,Urology ,radiation dosimetry ,Oncology ,Response Evaluation Criteria in Solid Tumors ,Ablative case ,Overall survival ,Medicine ,angiography ,Stage (cooking) ,cholangiocarcinoma ,business ,Adverse effect ,Intrahepatic Cholangiocarcinoma ,Research Paper - Abstract
Purpose To investigate safety, response, and survival after ablative glass microsphere 90Y radioembolization for unresectable intrahepatic cholangiocarcinoma. Materials and methods A retrospective review of 37 radioembolizations in 28 patients treated with single compartment dose of ≥190 Gy encompassing >75% of the largest tumor was performed. Tumors were assessed for stage, morphology, and arterial supply. Response per Modified Response Evaluation Criteria in Solid Tumors (mRECIST), freedom from progression (FFP), progression-free survival (PFS), overall survival (OS), biochemical hepatic function, performance status, and adverse events were investigated. Results The median highest dose per patient was 256.8 Gy (195.7-807.8). Objective response at 3 months was 94.1% (complete 44.1% and partial 50%). Median OS was not reached and the 30-month OS rate was 59%, with a median follow-up of 13.4 months (5.4-39.4). FFP in the radiated field and overall FFP at 30 months were 67% and 40%, respectively. Favorable arterial supply was associated with improved OS (p = 0.018). Unfavorable arterial supply was associated with worse OS [HR 5.7 (95% CI 1.1-28.9, p = 0.034)], and PFS [HR 5.9 (95% CI 1.9-18.4, p = 0.002)]. Patients with mass-forming tumors had a survival benefit (p = 0.002). Laboratory values and performance status did not significantly change 3 months after radioembolization. Grade 3 and 4 adverse events occurred in 2 (7.1%) patients. Conclusions Radioembolization of unresectable intrahepatic cholangiocarcinoma with ablative intent has a high response rate, promising survival, and is well tolerated.
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- 2021
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48. Identification and validation of seven RNA binding protein genes as a prognostic signature in oral cavity squamous cell carcinoma
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Junjie Wang, Zhifeng Chen, Tianjun Lan, Xiaolei Zhang, and Zijing Huang
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bioinformatics analysis ,overall survival ,Bioengineering ,RNA-binding protein ,Computational biology ,Biology ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,RNA-binding proteins (rbps) ,medicine ,Biomarkers, Tumor ,prognostic model ,Humans ,Oral Cavity Squamous Cell Carcinoma ,Gene ,Receiver operating characteristic ,Squamous Cell Carcinoma of Head and Neck ,Gene Expression Profiling ,RNA ,Computational Biology ,RNA-Binding Proteins ,General Medicine ,Nomogram ,Prognosis ,Prognostic model ,oral cavity squamous cell carcinoma (ocscc) ,Mouth Neoplasms ,Carcinogenesis ,Transcriptome ,TP248.13-248.65 ,Biotechnology ,Research Article ,Research Paper - Abstract
RNA binding proteins (RBPs) play a pivotal role in various biological processes, and aberrant expression of RBPs is closely associated with tumorigenesis and progression. However, the role of RBPs in oral cavity squamous cell carcinoma (OCSCC) is yet unveiled. In this study, RNA sequences and clinical information of OCSCC samples were acquired from The Cancer Genome Atlas (TCGA) database. A total of 650 RBPs, with significantly different expression between healthy and OCSCC samples, were identified using the limma package. A prognostic model was constructed by Lasso-Cox analysis, resulting in the determination of 7 prognosis-related RBPs: ERMP1, RNASE3, ARL4D, CSRP2, ULK1, ZC3H12D, and RPS28. Based on the prognostic model, the risk scores of the OCSCC samples were calculated. The capability of the prognostic model was further evaluated using the receiver operating characteristic curve (ROC). The areas under ROC were 0.764, 0.771, and 0.809 at 1, 3 and 5-year respectively in the TCGA dataset. Internal and external validation showed satisfactory predictive capability for prognosis in OCSCC. In addition, a nomogram was created to graphically present the model. To further validate the analytical data, qRT-PCR was performed on normal and OCSCC cell lines. The mRNA expression of the 7 prognostic genes was in accordance with the analytical results. Functional analysis and gene connection networks were used to describe the biological functions and underlying interactions among the 7 prognostic genes Overall, 7 prognosis-related RBPs were identified, which could be used to predict clinical prognosis and to identify potential therapeutic targets for OCSCC.
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- 2021
49. Preoperative Versus Postoperative Transarterial Chemoembolization on Prognosis of Large Hepatocellular Carcinoma
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Yu Yuan, Zhongguo Zhou, Qun-Fang Zhou, Zishan Liu, Xiaohui Wang, Minshan Chen, and Juncheng Wang
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medicine.medical_specialty ,Liver resection ,business.industry ,Proportional hazards model ,Hazard ratio ,medicine.disease ,Prognosis ,Disease control ,Gastroenterology ,Transarterial chemoembolization ,Confidence interval ,Large hepatocellular carcinoma ,Oncology ,Internal medicine ,Hepatocellular carcinoma ,Propensity score matching ,Adjuvant therapy ,Overall survival ,Medicine ,business ,Research Paper - Abstract
Background: Transarterial chemoembolization (TACE) has proven to be an effective adjuvant therapy with liver resection (LR) to treat patients with hepatocellular carcinoma (HCC). The aim of this study was to evaluate outcomes in patients with HCC larger than 5 cm, comparing those who had TACE before LR to those who had TACE after LR. Materials and methods: A total of 320 consecutive patients who underwent LR in combination with TACE for HCC larger than 5 cm from January 2009 to December 2014 were enrolled in study. Patients were divided into two groups: preoperative TACE group (n=199) and postoperative TACE group (n=121). Overall survival (OS) and recurrence-free survival (RFS) of patients were compared between preoperative TACE and postoperative TACE groups by propensity score-matching (PSM). We determined prognostic factors for recurrence and death using multivariate cox regression analysis. Results: Among the 320 patients, the median age was 48 (range, 18 to 75) years, and 285 (89.1%) patients were male. During the follow- up period, 88 (44.2%) patients in the preoperative TACE group and 69 (57.0%) patients in the postoperative TACE group died. Before PSM, both OS and RFS were significantly longer in the preoperative TACE group than those in the postoperative TACE group (P=0.001 and P
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- 2021
50. Identification of prognostic long non-coding RNA signature with potential drugs in hepatocellular carcinoma
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Fengjie Hao, Junqing Wang, Nan Wang, Yongjun Chen, and Xiang Wang
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Male ,Oncology ,Aging ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,drug response ,Risk groups ,Predictive Value of Tests ,Risk Factors ,Cell Line, Tumor ,Internal medicine ,Biomarkers, Tumor ,medicine ,Drug response ,Overall survival ,Humans ,long non-coding RNA ,business.industry ,Gene Expression Profiling ,Liver Neoplasms ,Primary malignancy ,hepatocellular carcinoma ,Cell Biology ,medicine.disease ,Survival Analysis ,Long non-coding RNA ,Tumor recurrence ,Gene Expression Regulation, Neoplastic ,Liver ,ROC Curve ,Hepatocellular carcinoma ,Prognostic model ,Female ,RNA, Long Noncoding ,prognosis ,business ,Research Paper - Abstract
Hepatocellular carcinoma (HCC) is the primary malignancy in the liver with high rate of death and recurrence. Novel prognostic model would be crucial for early diagnosis and improved clinical decision. The study aims to provide an effective lncRNA-based signature to predict survival time and tumor recurrence for HCC. Based on public database, lncRNA-based classifiers for overall survival and tumor recurrence were built with regression analysis and cross validation strategy. According to the risk-score of the classifiers, the whole cohorts were divided into groups with high and low risk. Afterwards, the efficiency of the lncRNA-based classifiers was evaluated and compared with other clinical factors. Finally, candidate small molecules for high risk groups were further screened using drug response databases to explore potential drugs for HCC treatment.
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- 2021
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