230 results
Search Results
2. Projective Brane Calculus
- Author
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Danos, Vincent, Pradalier, Sylvain, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Dough, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael, editor, Danos, Vincent, editor, and Schachter, Vincent, editor
- Published
- 2005
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3. Pseudomonas aeruginosa LptE is crucial for LptD assembly, cell envelope integrity, antibiotic resistance and virulence
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Regina Fernández-Piñar, Alessandra Polissi, Carmine Mancone, Francesco Imperi, Alessandra M. Martorana, Alessandra Lo Sciuto, Lo Sciuto, Alessandra, Martorana, Alessandra M., Fernández-Piñar, Regina, Mancone, Carmine, Polissi, Alessandra, and Imperi, Francesco
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0301 basic medicine ,Models, Molecular ,Lipopolysaccharide ,Moths ,medicine.disease_cause ,Lipid A ,LPS transport ,chemistry.chemical_compound ,Drug Resistance, Multiple, Bacterial ,lipid A ,biology ,Virulence ,Anti-Bacterial Agents ,Infectious Diseases ,Galleria mellonella ,Larva ,Pseudomonas aeruginosa ,lipids (amino acids, peptides, and proteins) ,Cell envelope ,Bacterial outer membrane ,Bacterial Outer Membrane Proteins ,Research Paper ,Microbiology (medical) ,030106 microbiology ,Immunology ,LptD ,outer membrane ,Microbiology ,lcsh:Infectious and parasitic diseases ,resistance ,03 medical and health sciences ,Bacterial Proteins ,medicine ,Animals ,lcsh:RC109-216 ,infection ,LptH ,virulence ,Parasitology ,Escherichia coli ,Cell Membrane ,biology.organism_classification ,030104 developmental biology ,chemistry ,Mutation ,Bacteria - Abstract
Lipopolysaccharide (LPS) is an essential structural component of the outer membrane (OM) of most Gram-negative bacteria. In the model organism Escherichia coli, LPS transport to the OM requires seven essential proteins (LptABCDEFG) that form a continuous bridge across the cell envelope. In Pseudomonas aeruginosa the recently-demonstrated essentiality of LptD and LptH, the P. aeruginosa LptA homologue, confirmed the crucial role of the Lpt system and, thus, of LPS in OM biogenesis in this species. Surprisingly, independent high-throughput transposon mutagenesis studies identified viable P. aeruginosa insertion mutants in the lptE gene, suggesting that it might be dispensable for bacterial growth. To test this hypothesis, we generated an lptE conditional mutant in P. aeruginosa PAO1. LptE depletion only slightly impairs P. aeruginosa growth in vitro. Conversely, LptE is important for cell envelope stability, antibiotic resistance and virulence in an insect model. Interestingly, the maturation and OM localization of LPS is only marginally affected in LptE-depleted cells, while the levels of the OM component LptD are strongly reduced. This suggests that P. aeruginosa LptE might not be directly involved in LPS transport, although it is clearly essential for the maturation and/or stability of LptD. While poor functionality of LptD caused by LptE depletion is somehow tolerated by P. aeruginosa, this has a high cost in terms of cell integrity, drug resistance and virulence, highlighting LptE function(s) as an interesting target to weaken P. aeruginosa defenses and reduce its infectivity.
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- 2022
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4. A one-step procedure for immobilising the thermostable carbonic anhydrase (SspCA) on the surface membrane of Escherichia coli
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Zeid A. ALOthman, Sameh M. Osman, Claudiu T. Supuran, Mosè Rossi, Clemente Capasso, Sonia Del Prete, Fatmah A.S. Alasmary, and Rosa Perfetto
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Surface Properties ,Bicarbonate ,outer membrane ,medicine.disease_cause ,01 natural sciences ,Gram-Negative Chemolithotrophic Bacteria ,Structure-Activity Relationship ,chemistry.chemical_compound ,Carbonic anhydrase ,Drug Discovery ,Escherichia coli ,medicine ,Enzyme kinetics ,thermostable enzyme ,Carbonic Anhydrases ,Pharmacology ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Chemistry ,Thermophile ,lcsh:RM1-950 ,Temperature ,General Medicine ,biology.organism_classification ,Combinatorial chemistry ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Enzyme ,ice nucleation protein ,lcsh:Therapeutics. Pharmacology ,Biochemistry ,biology.protein ,hydratase activity ,Bacterial outer membrane ,protonography ,Bacteria ,Research Paper ,Bacterial Outer Membrane Proteins - Abstract
The carbonic anhydrase superfamily (CA, EC 4.2.1.1) of metalloenzymes is present in all three domains of life (Eubacteria, Archaea, and Eukarya), being an interesting example of convergent/divergent evolution, with its seven families (alpha-, beta-, gamma-, delta-, zeta-, eta-, and theta-CAs) described so far. CAs catalyse the simple, but physiologically crucial reaction of carbon dioxide hydration to bicarbonate and protons. Recently, our groups characterised the a- CA from the thermophilic bacterium, Sulfurihydrogenibium yellowstonense finding a very high catalytic activity for the CO2 hydration reaction (k(cat) = 9.35 x 10(5) s(-1) and k(cat)/K-m = 1.1 x 10(8)M(-1) s(-1)) which was maintained after heating the enzyme at 80 degrees C for 3 h. This highly thermostable SspCA was covalently immobilised within polyurethane foam and onto the surface of magnetic Fe3O4 nanoparticles. Here, we describe a one-step procedure for immobilising the thermostable SspCA directly on the surface membrane of Escherichia coli, using the INPN domain of Pseudomonas syringae. This strategy has clear advantages with respect to other methods, which require as the first step the production and the purification of the biocatalyst, and as the second step the immobilisation of the enzyme onto a specific support. Our results demonstrate that thermostable SspCA fused to the INPN domain of P. syringae ice nucleation protein (INP) was correctly expressed on the outer membrane of engineered E. coli cells, affording for an easy approach to design biotechnological applications for this highly effective thermostable catalyst.
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- 2017
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5. Visualization of Antimicrobial-Induced Bacterial Membrane Disruption with a Bicolor AIEgen.
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Zhou, Chengcheng, Ding, Zeyu, Guo, Qiaoni, and Jiang, Meijuan
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BACTERIAL cell walls ,VISUALIZATION ,ESCHERICHIA coli ,AGAR plates ,ANTI-infective agents - Abstract
Gram-negative bacteria are difficult to kill due to their complex cell envelope, including the outer membrane (OM) and cytoplasmic membrane (CM). To monitor the membranolytic action of antimicrobials on Gram-negative bacteria would facilitate the development of effective antimicrobials. In this paper, an aggregation-induced emission luminogen (AIEgen) with microenvironment-sensitive properties was employed to indicate the interaction of antimicrobials with the OM and CM of Gram-negative bacteria. The damaged extent of OM and CM caused by antimicrobials with the change of dosage and incubation time can be visually captured based on the variation of two emission colors of IQ-Cm responding to OM-defective (green) and CM-disruptive bacteria (orange). Meanwhile, the activity assessment of antimicrobials can be easily realized within 1~2 h based on the distinct response of IQ-Cm to live and dead E. coli, which is much faster than the agar plate culture. This probe may shed light on the understanding of the interaction between the membrane-active antimicrobials and cell envelope of Gram-negative bacteria and contribute to the future development of antimicrobials. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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6. The mitochondrial voltage-dependent channel, VDAC, is modified asymmetrically by succinic anhydride.
- Author
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Doring, Charles and Colombini, Marco
- Abstract
In the accompanying paper, succinic anhydride was shown to react with the outer mitochondrial membrane channel-forming protein, VDAC, resulting in the loss of its voltage dependence. In this paper, the anhydride was added to VDAC held in a particular conformational state by means of an applied electric field. VDAC was inserted into the membranes from the cis side and the anhydride was added either to the cis or trans side. Channels modified in the open state behaved similarly whether anhydride was added to the cis or trans side. Modifications of VDAC in either of the two closed states did not. Modifications resulting in the loss of voltage-dependence occurred primarily when anhydride was added to the negative side of the membrane irrespective of which closed state the VDAC was in indicating that the accessibility of the gating charges alternated between the cis and trans sides as the channel's conformation was changed from one closed state to the other. Despite the pronounced asymmetry, in general the resulting channels behaved in the same way in response to either positive or negative fields. A model consistent with the results is presented which proposes that the same gating charges are responsible for channel closure at both positive and negative fields. [ABSTRACT FROM AUTHOR]
- Published
- 1985
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7. Were the autophagosome-lysosome/vacuole fusion models illustrated correctly in the literature?
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Liang, Yongheng
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MEMBRANE fusion ,CYTOLOGY ,RESEARCH personnel ,ABBREVIATIONS ,MISINFORMATION - Abstract
Exploration of autophagy in different species has become a hotspot in cell biology in the past decades. Macroautophagy (hereafter, autophagy) is the most widely studied type. One of the hallmarks of autophagy is the fusion of the outer membrane (OM) of a closed double-membrane mature autophagosome (AP) with the lysosomal/vacuolar single membrane. Most researchers in the autophagy field agree upon this description. However, AP-lysosome/vacuole fusion models that do not follow this description frequently appear in the literature, even published in some prestigious journals until now. Some of the misrepresented models are from autophagy laboratories with brilliant publication records. These flaws should be addressed as a public announcement in the autophagy field to avoid spreading misinformation. The editors and reviewers are the guardians to ensure correct models. Abbreviations: AP: autophagosome; IM: inner membrane; OM: outer membrane. [ABSTRACT FROM AUTHOR]
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- 2025
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8. OmpA controls order in the outer membrane and shares the mechanical load.
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Benn, Georgina, Borrelli, Carolina, Prakaash, Dheeraj, Johnson, Alex N. T., Fideli, Vincent A., Starr, Tahj, Fitzmaurice, Dylan, Combs, Ashton N., Wühr, Martin, Rojas, Enrique R., Khalid, Syma, Hoogenboom, Bart W., and Silhavy, Thomas J.
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ATOMIC force microscopy ,MECHANICAL loads ,CELL envelope (Biology) ,GENE fusion ,INTEGRAL functions - Abstract
OmpA, a predominant outer membrane (OM) protein in Escherichia coli, affects virulence, adhesion, and bacterial OM integrity. However, despite more than 50 y of research, the molecular basis for the role of OmpA has remained elusive. In this study, we demonstrate that OmpA organizes the OM protein lattice and mechanically connects it to the cell wall (CW). Using gene fusions, atomic force microscopy, simulations, and microfluidics, we show that the β-barrel domain of OmpA is critical for maintaining the permeability barrier, but both the β-barrel and CW-binding domains are necessary to enhance the cell envelope's strength. OmpA integrates the compressive properties of the OM protein lattice with the tensile strength of the CW, forming a mechanically robust composite that increases overall integrity. This coupling likely underpins the ability of the entire envelope to function as a cohesive, resilient structure, critical for the survival of bacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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9. Lipopolysaccharide transport to the cell surface: periplasmic transport and assembly into the outer membrane.
- Author
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May, Janine M., Sherman, David J., Simpson, Brent W., Ruiz, Natividad, and Kahne, Daniel
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LIPOPOLYSACCHARIDES ,GRAM-negative bacteria ,MEMBRANE proteins ,PROTEIN transport ,ESCHERICHIA coli periplasm ,LIPOPROTEINS - Abstract
Gram-negative bacteria possess an outer membrane (OM) containing lipopolysaccharide (LPS). Proper assembly of the OM not only prevents certain antibiotics from entering the cell, but also allows others to be pumped out. To assemble this barrier, the seven-protein lipopolysaccharide transport (Lpt) system extracts LPS from the outer leaflet of the inner membrane (IM), transports it across the periplasm and inserts it selectively into the outer leaflet of the OM. As LPS is important, if not essential, in most Gram-negative bacteria, the LPS biosynthesis and biogenesis pathways are attractive targets in the development of new classes of antibiotics. The accompanying paper (Simpson BW, May JM, Sherman DJ, Kahne D, Ruiz N. 2015 Phil. Trans. R. Soc. B 370, 20150029. (doi:10.1098/rstb.2015.0029)) reviewed the biosynthesis of LPS and its extraction from the IM. This paper will trace its journey across the periplasm and insertion into the OM. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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10. SurA Is Required for Outer Membrane Biogenesis and Can Be Used as a New Molecular Target for Plague Therapy
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Dentovskaya, S. V., Platonov, M. E., Shaikhutdinova, R. Z., Svetoch, T. E., Ivanov, S. A., Gapel’chenkova, T. V., Krasil’nikova, E. A., Trunyakova, A. S., Kombarova, T. I., Vagaiskaya, A. S., Lipatnikova, N. A., Mazurina, E. M., Kolombet, L. V., and Anisimov, A. P.
- Published
- 2024
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11. Neovascularization in Outer Membrane of Chronic Subdural Hematoma: A Rationale for Middle Meningeal Artery Embolization.
- Author
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Hyun Kim, Yoori Choi, Youngsun Lee, Jae-Kyung Won, Sung Ho Lee, Minseok Suh, Dong Soo Lee, Hyun-Seung Kang, Won-Sang Cho, and Gi Jeong Cheon
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SUBDURAL hematoma ,DURA mater ,NEOVASCULARIZATION ,BLOOD vessels ,ARTERIES - Abstract
Objective: Chronic subdural hematomas (cSDHs) are generally known to result from traumatic tears of bridging veins. However, the causes of repeat spontaneous cSDHs are still unclear. We investigated the changes in vasculature in the human dura mater and outer membrane (OM) of cSDHs to elucidate the cause of their spontaneous repetition. Methods: The dura mater was obtained from a normal control participant and a patient with repeat spontaneous cSDHs. The pathological samples from the patient included the dura mater and OM tightly adhered to the inner dura. The samples were analyzed with a particular focus on blood and lymphatic vessels by immunohistochemistry, 3-dimensional imaging using a transparent tissue clearing technique, and electron microscopy. Results: The dural border cell (DBC) layer of the dura mater and OM were histologically indistinguishable. There were 5.9 times more blood vessels per unit volume of tissue in the DBC layer and OM in the patient than in the normal control. The DBC layer and OM contained pathological sinusoidal capillaries not observed in the normal tissue; these capillaries were connected to the middle meningeal arteries via penetrating arteries. In addition, marked lymphangiogenesis in the periosteal and meningeal layers was observed in the patient with cSDHs. Conclusion: Neovascularization in the OM seemed to originate from the DBC layer; this is a potential cause of repeat spontaneous cSDHs. Embolization of the meningeal arteries to interrupt the blood supply to pathological capillaries via penetrating arteries may be an effective treatment option. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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12. mSphere of Influence: Celebrating exceptions to the rule of lipid A essentiality
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Katherine R. Hummels
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cell envelope ,outer membrane ,lipid A ,lipopolysaccharide ,Microbiology ,QR1-502 - Abstract
ABSTRACTKate Hummels works in the field of bacterial cell envelope biosynthesis and studies the regulation of the metabolic pathways needed to build the Gram-negative cell envelope. In this mSphere of Influence article, she reflects on how the papers “A penicillin-binding protein inhibits selection of colistin-resistant, lipopoligosaccharide-deficient Acinetobacter baumannii” by Boll et al. and “Caulobacter lipid A is conditionally dispensable in the absence of fur and in the presence of anionic sphingolipids” by Zik et al. made an impact on her by studying organisms that deviate from accepted norms to highlight the plethora of unanswered questions in cell envelope biology.
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- 2024
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13. Temperature-Induced Restructuring of Mycolic Acid Bilayers Modeling the Mycobacterium tuberculosis Outer Membrane: A Molecular Dynamics Study.
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Vasyankin, Alexander V., Panteleev, Sergey V., Steshin, Ilya S., Shirokova, Ekaterina A., Rozhkov, Alexey V., Livshits, Grigory D., Radchenko, Eugene V., Ignatov, Stanislav K., and Palyulin, Vladimir A.
- Subjects
MYCOBACTERIUM tuberculosis ,MOLECULAR dynamics ,MYCOLIC acids ,DIFFUSION coefficients ,HIGH temperatures ,PHASE transitions ,ACTIVATION energy - Abstract
The emergence of new drug-resistant strains of the tuberculosis pathogen Mycobacterium tuberculosis (Mtb) is a new challenge for modern medicine. Its resistance capacity is closely related to the properties of the outer membrane of the Mtb cell wall, which is a bilayer membrane formed by mycolic acids (MAs) and their derivatives. To date, the molecular mechanisms of the response of the Mtb outer membrane to external factors and, in particular, elevated temperatures have not been sufficiently studied. In this work, we consider the temperature-induced changes in the structure, ordering, and molecular mobility of bilayer MA membranes of various chemical and conformational compositions. Using all-atom long-term molecular dynamics simulations of various MA membranes, we report the kinetic parameters of temperature-dependent changes in the MA self-diffusion coefficients and conformational compositions, including the apparent activation energies of these processes, as well as the characteristic times of ordering changes and the features of phase transitions occurring over a wide range of elevated temperatures. Understanding these effects could be useful for the prevention of drug resistance and the development of membrane-targeting pharmaceuticals, as well as in the design of membrane-based materials. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Free Energy Barriers for Passive Drug Transport through the Mycobacterium tuberculosis Outer Membrane: A Molecular Dynamics Study.
- Author
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Steshin, Ilya S., Vasyankin, Alexander V., Shirokova, Ekaterina A., Rozhkov, Alexey V., Livshits, Grigory D., Panteleev, Sergey V., Radchenko, Eugene V., Ignatov, Stanislav K., and Palyulin, Vladimir A.
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MYCOBACTERIUM tuberculosis ,BIOLOGICAL transport ,MOLECULAR dynamics ,GIBBS' energy diagram ,ACTIVATION energy ,MULTIDRUG-resistant tuberculosis ,RIFAMPIN - Abstract
The emergence of multi-drug-resistant tuberculosis strains poses a significant challenge to modern medicine. The development of new antituberculosis drugs is hindered by the low permeability of many active compounds through the extremely strong bacterial cell wall of mycobacteria. In order to estimate the ability of potential antimycobacterial agents to diffuse through the outer mycolate membrane, the free energy profiles, the corresponding activation barriers, and possible permeability modes of passive transport for a series of known antibiotics, modern antituberculosis drugs, and prospective active drug-like molecules were determined using molecular dynamics simulations with the all-atom force field and potential of mean-force calculations. The membranes of different chemical and conformational compositions, density, thickness, and ionization states were examined. The typical activation barriers for the low-mass molecules penetrating through the most realistic membrane model were 6–13 kcal/mol for isoniazid, pyrazinamide, and etambutol, and 19 and 25 kcal/mol for bedaquilin and rifampicin. The barriers for the ionized molecules are usually in the range of 37–63 kcal/mol. The linear regression models were derived from the obtained data, allowing one to estimate the permeability barriers from simple physicochemical parameters of the diffusing molecules, notably lipophilicity and molecular polarizability. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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15. Porin-Mediated Carbapenem Resistance in Klebsiella pneumoniae: an Alarming Threat to Global Health
- Author
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Gogoi, Indrani, Puzari, Minakshi, and Chetia, Pankaj
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- 2023
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16. Reconstitution of the lipid matrix of the outer membrane of Gram-negative bacteria as asymmetric planar bilayer.
- Author
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Seydel, Ulrich, Schröder, Guido, and Brandenburg, Klaus
- Abstract
This paper is a report on the reconstitution of the lipid matrix of the outer membrane of Gram-negative bacteria as an asymmetric planar bilayer. This is the first time that a planar membrane is described, which consists on one side of a phospholipid (PL) mixture and on the other side of lipopolysaccharide (LPS). Therefore, strong emphasis is placed on a physical characterization of this membrane via its electrical properties. The membranes were prepared from spread monolayers or from vesicle-derived monolayers. Contrary to observations for symmetric phospholipid membranes, specific capacitances of (0.67±0.02) μF·cm, breakdown voltages between 200 and 400 mV and specific conductances between 10 and 2×10S·cm were obtained independent of the preparation method. The LPS-containing membranes were stable up to 3 hr if they were formed and kept at temperatures above the hydrocarbon chain melting temperature of the LPS. For the specific capacitance, a dependence on the aperture radius was observed. This is explained by assuming a toroidal transition zone at the rim of the aperture. First results on the action of the pore-forming α-toxin from Staphylococcus aureus on bilayers of different composition demonstrate particular characteristics of this asymmetric bilayer system. The pore-formation rate is highest in symmetric phospholipid bilayers, considerably lower in asymmetric PL/LPS systems and fully inhibited in LPS/LPS systems. [ABSTRACT FROM AUTHOR]
- Published
- 1989
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17. Tunable force transduction through the Escherichia coli cell envelope.
- Author
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Williams-Jones, Daniel P., Webby, Melissa N., Press, Cara E., Gradon, Jan M., Armstrong, Sophie R., Szczepaniak, Joanna, and Kleanthous, Colin
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ESCHERICHIA coli ,GENETIC transduction ,GRAM-negative bacteria ,ESSENTIAL nutrients ,TRANSDUCERS - Abstract
The outer membrane (OM) of Gram-negative bacteria is not energised and so processes requiring a driving force must connect to energy-transduction systems in the inner membrane (IM). Tol (Tol-Pal) and Ton are related, proton motive force-(PMF-) coupled assemblies that stabilise the OM and import essential nutrients, respectively. Both rely on proton-harvesting IM motor (stator) complexes, which are homologues of the flagellar stator unit Mot, to transduce force to the OM through elongated IM force transducer proteins, TolA and TonB, respectively. How PMF-driven motors in the IM generate mechanical work at the OM via force transducers is unknown. Here, using cryoelectron microscopy, we report the 4.3Å structure of the Escherichia coli TolQR motor complex. The structure reaffirms the 5:2 stoichiometry seen in Ton and Mot and, with motor subunits related to each other by 10 to 16° rotation, supports rotary motion as the default for these complexes. We probed the mechanism of force transduction to the OM through in vivo assays of chimeric TolA/TonB proteins where sections of their structurally divergent, periplasm-spanning domains were swapped or replaced by an intrinsically disordered sequence. We find that TolA mutants exhibit a spectrum of force output, which is reflected in their respective abilities to both stabilise the OM and import cytotoxic colicins across the OM. Our studies demonstrate that structural rigidity of force transducer proteins, rather than any particular structural form, drives the efficient conversion of PMF-driven rotary motions of 5:2 motor complexes into physiologically relevant force at the OM. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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18. TonB-Dependent Transport Across the Bacterial Outer Membrane.
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Silale, Augustinas and van den Berg, Bert
- Abstract
TonB-dependent transporters (TBDTs) are present in all gram-negative bacteria and mediate energy-dependent uptake of molecules that are too scarce or large to be taken up efficiently by outer membrane (OM) diffusion channels. This process requires energy that is derived from the proton motive force and delivered to TBDTs by the TonB-ExbBD motor complex in the inner membrane. Together with the need to preserve the OM permeability barrier, this has led to an extremely complex and fascinating transport mechanism for which the fundamentals, despite decades of research, are still unclear. In this review, we describe our current understanding of the transport mechanism of TBDTs, their potential role in the delivery of novel antibiotics, and the important contributions made by TBDT-associated (lipo)proteins. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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19. A periplasmic phospholipase that maintains outer membrane lipid asymmetry in Pseudomonas aeruginosa.
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Guest, Randi L., Lee, Michael J., Wei Wang, and Silhavy, Thomas J.
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MEMBRANE lipids ,PSEUDOMONAS aeruginosa ,MEMBRANE transport proteins ,MEMBRANE permeability (Biology) ,GLYCEROPHOSPHOLIPIDS - Abstract
The outer membrane of Gram-negative bacteria is unique in both structure and function. The surface-exposed outer leaflet is composed of lipopolysaccharide, while the inner leaflet is composed of glycerophospholipids. This lipid asymmetry creates mechanical strength, lowers membrane permeability, and is necessary for virulence in many pathogens. Glycerophospholipids that mislocalize to the outer leaflet are removed by the Mla pathway, which consists of the outer membrane channel MlaA, the periplasmic lipid carrier MlaC, and the inner membrane transporter MlaBDEF. The opportunistic pathogen Pseudomonas aeruginosa has two proteins of the MlaA family: PA2800 and PA3239. Here, we show that PA2800 is part of a canonical Mla pathway, while PA3239 functions with the putative lipase PA3238. While loss of either pathway individually has little to no effect on outer membrane integrity, loss of both pathways weakens the outer membrane permeability barrier and increases production of the secondary metabolite pyocyanin. We propose that mislocalized glycerophospholipids are removed from the outer leaflet by PA3239 (renamed MlaZ), transferred to PA3238 (renamed MlaY), and degraded. This pathway streamlines recycling of glycerophospholipid degradation products by removing glycerophospholipids from the outer leaflet prior to degradation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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20. Scope and Limitations of Exploiting the Ability of the Chemosensitizer NV716 to Enhance the Activity of Tetracycline Derivatives against Pseudomonas aeruginosa.
- Author
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Draveny, Margot, Rose, Clémence, Pinet, Alexis, Ferrié, Laurent, Figadère, Bruno, Brunel, Jean-Michel, and Masi, Muriel
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PSEUDOMONAS aeruginosa ,TETRACYCLINE ,ANTIBACTERIAL agents ,TETRACYCLINES ,GRAM-negative bacteria ,DRUG resistance in bacteria - Abstract
The spread of antibiotic resistance is an urgent threat to global health that requires new therapeutic approaches. Treatments for pathogenic Gram-negative bacteria are particularly challenging to identify due to the robust OM permeability barrier in these organisms. One strategy is to use antibiotic adjuvants, a class of drugs that have no significant antibacterial activity on their own but can act synergistically with certain antibiotics. Previous studies described the discovery and development of polyaminoisoprenyl molecules as antibiotic adjuvants with an OM effect. In particular, the compound NV716 has been shown to sensitize Pseudomonas aeruginosa to tetracycline antibiotics such as doxycycline. Here, we sought to explore the disruption of OM to sensitize P. aeruginosa to otherwise inactive antimicrobials using a series of tetracycline derivatives in the presence of NV716. We found that OM disruption expands the hydrophobicity threshold consistent with antibacterial activity to include hydrophobic molecules, thereby altering permeation rules in Gram-negative bacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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21. Investigation of the immune escape mechanism of Treponema pallidum.
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Tang, Yun, Zhou, Yingjie, He, Bisha, Cao, Ting, Zhou, Xiangping, Ning, Lichang, Chen, En, Li, Yumeng, Xie, Xiaoping, Peng, Binfeng, Hu, Yibao, and Liu, Shuangquan
- Subjects
SYPHILIS prevention ,NATURAL immunity ,SYPHILIS ,IMMUNE system ,VACCINE development ,BACTERIAL vaccines - Abstract
Background: Syphilis is a chronic sexually transmitted disease caused by Treponema pallidum subspecies pallidum (T. pallidum), which is a public health problem that seriously affects human health worldwide. T. pallidum is characterized by early transmission and immune escape and is therefore termed an "invisible pathogen". Methods: This review systematically summarizes the host's innate and adaptive immune responses to T. pallidum infection as well as the escape mechanisms of T. pallidum. Purpose: To lay the foundation for assessing the pathogenic mechanism and the systematic prevention and treatment of syphilis. Conclusion: The immune escape mechanism of T. pallidum plays an important role in its survival. Exploring the occurrence and development of these mechanisms has laid the foundation for the development of syphilis vaccine. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
22. Fabrication and Optimization of Nafion as a Protective Membrane for TiN-Based pH Sensors.
- Author
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Paul Shylendra, Shimrith, Wajrak, Magdalena, and Alameh, Kamal
- Subjects
NAFION ,TITANIUM nitride ,POLYMERIC membranes ,GLASS electrodes ,DETECTORS ,RADIOFREQUENCY sputtering - Abstract
In this study, a solid-state modified pH sensor with RF magnetron sputtering technology was developed. The sensor consists of an active electrode consisting of a titanium nitride (TiN) film with a protective membrane of Nafion and a reference glass electrode of Ag/AgCl. The sensitivity of the pH sensor was investigated. Results show a sensor with excellent characteristics: sensitivity of 58.6 mV/pH for pH values from 2 to 12, very short response time of approximately 12 s in neutral pH solutions, and stability of less than 0.9 mV in 10 min duration. Further improvement in the performance of the TiN sensor was studied by application of a Nafion protective membrane. Nafion improves the sensor sensitivity close to Nernstian by maintaining a linear response. This paves the way to implement TiN with Nafion protection to block any interference species during real time applications in biosensing and medical diagnostic pH sensors. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
23. Outer Membrane Integrity-Dependent Fluorescence of the Japanese Eel UnaG Protein in Live Escherichia coli Cells.
- Author
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Richard, Céline S. M., Dey, Hymonti, Øyen, Frode, Maqsood, Munazza, and Blencke, Hans-Matti
- Subjects
ANGUILLA japonica ,ESCHERICHIA coli ,FLUORESCENCE ,FLUORESCENT proteins ,REPORTER genes ,PROTEINS - Abstract
Reporter genes are important tools in many biological disciplines. The discovery of novel reporter genes is relatively rare. However, known reporter genes are constantly applied to novel applications. This study reports the performance of the bilirubin-dependent fluorescent protein UnaG from the Japanese eel Anguilla japonicas in live Escherichia coli cells in response to the disruption of outer membrane (OM) integrity at low bilirubin (BR) concentrations. Using the E. coli wild-type strain MC4100, its isogenic OM-deficient mutant strain NR698, and different OM-active compounds, we show that BR uptake and UnaG fluorescence depend on a leaky OM at concentrations of 10 µM BR and below, while fluorescence is mostly OM integrity-independent at concentrations above 50 µM BR. We suggest that these properties of the UnaG–BR couple might be applied as a biosensor as an alternative to the OM integrity assays currently in use. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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24. Conformational Dynamics and Stability of Bilayers Formed by Mycolic Acids from the Mycobacterium tuberculosis Outer Membrane.
- Author
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Savintseva, Liana A., Steshin, Ilya S., Avdoshin, Alexander A., Panteleev, Sergey V., Rozhkov, Alexey V., Shirokova, Ekaterina A., Livshits, Grigory D., Vasyankin, Alexander V., Radchenko, Eugene V., Ignatov, Stanislav K., and Palyulin, Vladimir A.
- Subjects
MYCOLIC acids ,MYCOBACTERIUM tuberculosis ,DYNAMIC simulation ,PERMEABILITY ,MOLECULAR dynamics ,ANTIBIOTICS - Abstract
Bilayers of mycolic acids (MAs) form the outer membrane of Mycobacterium tuberculosis that has high strength and extremely low permeability for external molecules (including antibiotics). For the first time, we were able to study them using the all-atom long-term molecular dynamic simulations (from 300 ns up to 1.2 μs) in order to investigate the conformational changes and most favorable structures of the mycobacterial membranes. The structure and properties of the membranes are crucially dependent on the initial packing of the α-mycolic acid (AMA) molecules, as well as on the presence of the secondary membrane components, keto- and methoxy mycolic acids (KMAs and MMAs). In the case of AMA-based membranes, the most labile conformation is W while other types of conformations (sU as well as sZ, eU, and eZ) are much more stable. In the multicomponent membranes, the presence of the KMA and MMA components (in the W conformation) additionally stabilizes both the W and eU conformations of AMA. The membrane in which AMA prevails in the eU conformation is much thicker and, at the same time, much denser. Such a packing of the MA molecules promotes the formation of a significantly stronger outer mycobacterial membrane that should be much more resistant to the threatening external factors. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
25. Interaction of Tryptophan- and Arginine-Rich Antimicrobial Peptide with E. coli Outer Membrane—A Molecular Simulation Approach.
- Author
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Necula, George, Bacalum, Mihaela, and Radu, Mihai
- Subjects
ESCHERICHIA coli ,ANTIMICROBIAL peptides ,MOLECULAR dynamics ,GRAM-negative bacteria ,BINDING sites ,TRYPTOPHAN ,LIPOPOLYSACCHARIDES - Abstract
A short antimicrobial peptide (AMP), rich in tryptophan and arginine (P6—HRWWRWWRR-NH2), was used in molecular dynamics (MD) simulations to investigate the interaction between AMPs and lipopolysaccharides (LPS) from two E. coli outer membrane (OM) membrane models. The OM of Gram-negative bacteria is an asymmetric bilayer, with the outer layer consisting exclusively of lipopolysaccharide molecules and the lower leaflet made up of phospholipids. The mechanisms by which short AMPs permeate the OM of Gram-negative bacteria are not well understood at the moment. For this study, two types of E. coli OM membrane models were built with (i) smooth LPS composed of lipid A, K12 core and O21 O-antigen, and (ii) rough type LPS composed of lipid A and R1 core. An OmpF monomer from E. coli was embedded in both membrane models. MD trajectories revealed that AMP insertion in the LPS layer was facilitated by the OmpF-created gap and allowed AMPs to form hydrogen bonds with the phosphate groups of inner core oligosaccharides. OM proteins such as OmpF may be essential for the permeation of short AMPs such as P6 by exposing the LPS binding site or even by direct translocation of AMPs across the OM. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
26. Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival.
- Author
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Schink, Severin, Ammar, Constantin, Chang, Yu‐Fang, Zimmer, Ralf, and Basan, Markus
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PROTEOMICS ,STARVATION ,ESCHERICHIA coli ,BACTERIAL physiology ,DEATH rate - Abstract
Bacteria reorganize their physiology upon entry to stationary phase. What part of this reorganization improves starvation survival is a difficult question because the change in physiology includes a global reorganization of the proteome, envelope, and metabolism of the cell. In this work, we used several trade‐offs between fast growth and long survival to statistically score over 2,000 Escherichia coli proteins for their global correlation with death rate. The combined ranking allowed us to narrow down the set of proteins that positively correlate with survival and validate the causal role of a subset of proteins. Remarkably, we found that important survival genes are related to the cell envelope, i.e., periplasm and outer membrane, because the maintenance of envelope integrity of E. coli plays a crucial role during starvation. Our results uncover a new protective feature of the outer membrane that adds to the growing evidence that the outer membrane is not only a barrier that prevents abiotic substances from reaching the cytoplasm but also essential for bacterial proliferation and survival. Synopsis: Proteomic analysis of Escherichia coli under various growth conditions reveals that a trade‐off between growth and starvation can be explained by bacteria investing resources into the cell envelope to reduce its permeability, which improves their lifespan at the expense of growth.A trade‐off between growth rate and death rate confines the fitness of bacteria across environments.Analysis of proteome signatures across five independent perturbations reveals the cell envelope as a key determinant of the death rate.The trade‐off can be abolished by changing the environment to a low salt but osmo‐balanced medium where cell envelope integrity is not limiting. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
27. Isolation and characterization of a main porin from the outer membrane of Salinibacter ruber
- Author
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Farci, Domenica, Cocco, Emma, Tanas, Marta, Kirkpatrick, Joanna, Maxia, Andrea, Tamburini, Elena, Schröder, Wolfgang P., and Piano, Dario
- Published
- 2022
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- View/download PDF
28. A Molecular Dynamics Study of Antimicrobial Peptide Interactions with the Lipopolysaccharides of the Outer Bacterial Membrane
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Sharma, Pradyumn and Ayappa, K. Ganapathy
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- 2022
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29. The Remarkable Innate Resistance of Burkholderia bacteria to Cationic Antimicrobial Peptides: Insights into the Mechanism of AMP Resistance
- Author
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Ghimire, Jenisha, Guha, Shantanu, Nelson, Benjamin J., Morici, Lisa A., and Wimley, William C.
- Published
- 2022
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30. On the molecular mechanism of nonspecific antimicrobial action of protonated diallylammonium polymers on mycobacterial cells.
- Author
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Timofeeva, Larisa, Bondarenko, Galina, Nikitushkin, Vadim, Simonova, Yulia, Topchiy, Maxim, Eremenko, Ivan, Shleeva, Margarita, Mulyukin, Andrey, and Kaprelyants, Arseny
- Subjects
- *
ANTIMICROBIAL polymers , *CELL death inhibition , *TUBERCULOSIS , *MEMBRANE potential , *POLYMERS , *POLYMERIC membranes , *MYCOBACTERIUM smegmatis , *CELL death - Abstract
[Display omitted] • Protonated polydiallylamines exhibit biocidal action on M. smegmatis. • It was proved direct interaction of polymers with the molecules of outer membrane. • Protonated polydiallylamines bind to phenolic glycolipids via non-covalent complex. • Hydrogen bonding gives the main contribution to the energy of complexation. • Rigid cell wall of M. smegmatis is vulnerable to protonated polydiallylamines. The protonated diallylammonium polymers (PDAA) are known to possess a high antimicrobial activity relative to a broad scope of pathogens, unlike their quaternary analog poly(N, N -diallyl- N, N -dimethylammonium chloride) (PDADMAC). Moreover, PDAA exhibits nonspecific antimicrobial activity relative to Mycobacterium tuberculosis , in contrast to known quaternary polymeric and low-molecular-weight biocides. The present paper is devoted to studying, using several physicochemical methods, the different facets of the interaction of secondary poly (diallylammonium trifluoroacetate) (PDAATFA) with Mycobacterium smegmatis – the nearest fast-growing relative of M. tuberculosis in comparison with the action of PDADMAC. We studied the interaction between polymer and phenolic glycolipids molecules (PGL) (i.e., molecules of the outer leaflet of both M. smegmatis and M. tuberculosis cell wall) by FTIR. We used phenyl-β-D-glucuronide as a model compound whose structure is close to that of the glycosylated phenolic part of the PGL molecule. It was assessed the polymer effect on transmembrane potential (TM) and permeability barrier of M. smegmatis. It was studied the biocidal activity of the polymers relative to M. smegmatis. The cytotoxic effect of PDAATFA on M. smegmatis cells was analyzed by TEM. We have proved the direct interaction of polymers with the outer membrane molecules for the first time. FTIR and the rest data show a formation of the non-covalent intermolecular hydrogen-bonded complex between protonated PDAATFA polymers and phenolic glycolipids that leads to the destruction of the mycobacterial outer membrane and, as a result, cell death. We believe that because of the structural similarity of cell wall chemistry and organization, this conclusion is proper for model organism M. smegmatis and pathogenic M. tuberculosis. Contrary to expected, the action of more hydrophobic PDADMAC does not lead to a destruction of the outer membrane but to a gradual suppression of the TM potential and cell death due to inhibition of general bioenergetic processes over the extended treatment time. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
31. The role of the individual TOM subunits in the association of PINK1 with depolarized mitochondria
- Author
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Maruszczak, Klaudia K., Jung, Martin, Rasool, Shafqat, Trempe, Jean-François, and Rapaport, Doron
- Published
- 2022
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32. Phase separation in the outer membrane of Escherichia coli.
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Benn, Georgina, Mikheyeva, Irina V., Inns, Patrick George, Forster, Joel C., Ojkic, Nikola, Bortolini, Christian, Ryadnov, Maxim G., Kleanthous, Colin, Silhavy, Thomas J., and Hoogenboom, Bart W.
- Subjects
PHASE separation ,MEMBRANE separation ,ESCHERICHIA coli ,ATOMIC force microscopy ,GRAM-negative bacteria ,COMMERCIAL products - Abstract
Gram-negative bacteria are surrounded by a protective outer membrane (OM) with phospholipids in its inner leaflet and lipopolysaccharides (LPS) in its outer leaflet. The OM is also populated with many β-barrel outer-membrane proteins (OMPs), some of which have been shown to cluster into supramolecular assemblies. However, it remains unknown how abundant OMPs are organized across the entire bacterial surface and how this relates to the lipids in the membrane. Here, we reveal how the OM is organized from molecular to cellular length scales, using atomic force microscopy to visualize the OM of live bacteria, including engineered Escherichia coli strains and complemented by specific labeling of abundant OMPs. We find that a predominant OMP in the E. coli OM, the porin OmpF, forms a near-static network across the surface, which is interspersed with barren patches of LPS that grow and merge with other patches during cell elongation. Embedded within the porin network is OmpA, which forms noncovalent interactions to the underlying cell wall. When the OM is destabilized by mislocalization of phospholipids to the outer leaflet, a new phase appears, correlating with bacterial sensitivity to harsh environments. We conclude that the OM is a mosaic of phase-separated LPS-rich and OMP-rich regions, the maintenance of which is essential to the integrity of the membrane and hence to the lifestyle of a gram-negative bacterium. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
33. Porin threading drives receptor disengagement and establishes active colicin transport through Escherichia coli OmpF.
- Author
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Francis, Marie-Louise R., Webby, Melissa N., Housden, Nicholas G., Kaminska, Renata, Elliston, Emma, Chinthammit, Boonyaporn, Lukoyanova, Natalya, and Kleanthous, Colin
- Subjects
BIOLOGICAL transport ,ESCHERICHIA coli ,BACTERIAL cell walls ,BACTERIOCINS ,GRAM-negative bacteria - Abstract
Bacteria deploy weapons to kill their neighbours during competition for resources and to aid survival within microbiomes. Colicins were the first such antibacterial system identified, yet how these bacteriocins cross the outer membrane (OM) of Escherichia coli is unknown. Here, by solving the structures of translocation intermediates via cryo-EM and by imaging toxin import, we uncover the mechanism by which the Tol-dependent nuclease colicin E9 (ColE9) crosses the bacterial OM. We show that threading of ColE9's disordered N-terminal domain through two pores of the trimeric porin OmpF causes the colicin to disengage from its primary receptor, BtuB, and reorganises the translocon either side of the membrane. Subsequent import of ColE9 through the lumen of a single OmpF subunit is driven by the proton-motive force, which is delivered by the TolQ-TolR-TolA-TolB assembly. Our study answers longstanding questions, such as why OmpF is a better translocator than OmpC, and reconciles the mechanisms by which both Toland Ton-dependent bacteriocins cross the bacterial outer membrane. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
34. The potential utility of liposomes for Neisseria vaccines.
- Author
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Christodoulides, Myron, Humbert, Maria Victoria, and Heckels, John E
- Subjects
NEISSERIA ,LIPOSOMES ,BILAYER lipid membranes ,NEISSERIA gonorrhoeae ,SEXUALLY transmitted diseases ,NEISSERIA meningitidis - Abstract
Species of the genus Neisseria are important global pathogens. Neisseria gonorrhoeae (gonococcus) causes the sexually transmitted disease gonorrhea and Neisseria meningitidis (meningococcus) causes meningitis and sepsis. Liposomes are self-assembled spheres of phospholipid bilayers enclosing a central aqueous space, and they have attracted much interest and use as a delivery vehicle for Neisseria vaccine antigens. A brief background on Neisseria infections and the success of licensed meningococcal vaccines are provided. The absence of a gonococcal vaccine is highlighted. The use of liposomes for delivering Neisseria antigens and adjuvants, for the purposes of generating specific immune responses, is reviewed. The use of other lipid-based systems for antigen and adjuvant delivery is examined briefly. With renewed interest in developing a gonococcal vaccine, liposomes remain an attractive option for delivering antigens. The discipline of nanotechnology provides additional nanoparticle-based options for gonococcal vaccine development. Future work would be needed to tailor the composition of liposomes and other nanoparticles to the specific vaccine antigen(s), in order to generate optimal anti-gonococcal immune responses. The potential use of liposomes and other nanoparticles to deliver anti-gonococcal compounds to treat infections also should be explored further. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
35. The LpoA activator is required to stimulate the peptidoglycan polymerase activity of its cognate cell wall synthase PBP1a.
- Author
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Sardis, Marios F., Bohrhunter, Jessica L., Greene, Neil G., and Bernhardt, Thomas G.
- Subjects
CELL physiology ,PENICILLIN-binding proteins ,OSMOTIC pressure ,CATALYTIC domains ,GRAM-negative bacteria ,COMMERCIAL products - Abstract
A cell wall made of the heteropolymer peptidoglycan (PG) surrounds most bacterial cells. This essential surface layer is required to prevent lysis from internal osmotic pressure. The class A penicillin-binding proteins (aPBPs) play key roles in building the PG network. These bifunctional enzymes possess both PG glycosyltransferase (PGT) and transpeptidase (TP) activity to polymerize the wall glycans and crosslink them, respectively. In Escherichia coli and other gram-negative bacteria, aPBP function is dependent on outer membrane lipoproteins. The lipoprotein LpoA activates PBP1a and LpoB promotes PBP1b activity. In a purified system, the major effect of LpoA on PBP1a is TP stimulation. However, the relevance of this activation to the cellular function of LpoA has remained unclear. To better understand why PBP1a requires LpoA for its activity in cells, we identified variants of PBP1a from E. coli and Pseudomonas aeruginosa that function in the absence of the lipoprotein. The changes resulting in LpoA bypass map to the PGT domain and the linker region between the two catalytic domains. Purification of the E. coli variants showed that they are hyperactivated for PGT but not TP activity. Furthermore, in vivo analysis found that LpoA is necessary for the glycan synthesis activity of PBP1a in cells. Thus, our results reveal that LpoA exerts a much greater control over the cellular activity of PBP1a than previously appreciated. It not only modulates PG cross-linking but is also required for its cognate synthase to make PG glycans in the first place. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
36. Outer Membrane Protein‐Coated Nanoparticles as Antibacterial Vaccine Candidates
- Author
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Anwar, Majid, Muhammad, Faqir, Akhtar, Bushra, Anwar, Muhammad Irfan, Raza, Ahmad, and Aleem, Abdul
- Published
- 2021
- Full Text
- View/download PDF
37. Visualization of Antimicrobial-Induced Bacterial Membrane Disruption with a Bicolor AIEgen
- Author
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Chengcheng Zhou, Zeyu Ding, Qiaoni Guo, and Meijuan Jiang
- Subjects
membrane-active antimicrobial ,aggregation-induced emission ,Gram-negative bacteria ,visualization ,outer membrane ,cytoplasm membrane ,Biochemistry ,QD415-436 - Abstract
Gram-negative bacteria are difficult to kill due to their complex cell envelope, including the outer membrane (OM) and cytoplasmic membrane (CM). To monitor the membranolytic action of antimicrobials on Gram-negative bacteria would facilitate the development of effective antimicrobials. In this paper, an aggregation-induced emission luminogen (AIEgen) with microenvironment-sensitive properties was employed to indicate the interaction of antimicrobials with the OM and CM of Gram-negative bacteria. The damaged extent of OM and CM caused by antimicrobials with the change of dosage and incubation time can be visually captured based on the variation of two emission colors of IQ-Cm responding to OM-defective (green) and CM-disruptive bacteria (orange). Meanwhile, the activity assessment of antimicrobials can be easily realized within 1~2 h based on the distinct response of IQ-Cm to live and dead E. coli, which is much faster than the agar plate culture. This probe may shed light on the understanding of the interaction between the membrane-active antimicrobials and cell envelope of Gram-negative bacteria and contribute to the future development of antimicrobials.
- Published
- 2022
- Full Text
- View/download PDF
38. Disparate outer membrane exclusionary properties underlie intrinsic resistance to hydrophobic substances in Pseudomonas spp. isolated from surface waters under triclosan selection.
- Author
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Chambers, Lauren E., Chang, Mang, Boyina, Kavya, Williams, Ashton, Dye, Rebecca, Miller, Robert V., DeGear, Michelle A., Assefa, Senait, Köhler, Gerwald A., and Champlin, Franklin R.
- Subjects
TRICLOSAN ,PSEUDOMONAS ,ANTIBACTERIAL agents ,FLUORESCENT probes ,RNA sequencing ,MUNICIPAL water supply - Abstract
Representative members of surface water microbiota were obtained from three unrelated municipal sites in Oklahoma by direct plating under selection by the hydrophobic biocide triclosan. Multiple methods were employed to determine if intrinsic triclosan resistance reflected resistance to hydrophobic molecules by virtue of outer membrane impermeability. While all but one organism isolated in the absence of triclosan were able to initiate growth on MacConkey agar, only one was able to initiate significant growth with triclosan present. In contrast, all bacteria selected with triclosan were identified as Pseudomonas spp. using 16S RNA gene sequencing and exhibited growth comparable to Pseudomonas aeruginosa controls in the presence of hydrophobic antibacterial agents to include triclosan. Two representative bacteria isolated in the absence of triclosan allowed for greater outer membrane association with the fluorescent hydrophobic probe 1-N-phenylnapthylamine than did two triclosan-resistant isolates. Compound 48/80 disruption of outer membrane impermeability properties for hydrophobic substances either partially or fully sensitized nine of twelve intrinsically resistant isolates to triclosan. These data suggest that outer membrane exclusion underlies intrinsic resistance to triclosan in some, but not all Pseudomonas spp. isolated by selection from municipal surface waters and implicates the involvement of concomitant triclosan resistance mechanisms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
39. Cationic polymer contributes to broaden the spectrum of vancomycin activity achieving eradication of Pseudomonas aeruginosa
- Author
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Corti, Melisa B., Campagno, Luciana P., Romero, Verónica L., Gutierrez, Silvina, and Alovero, Fabiana L.
- Published
- 2022
- Full Text
- View/download PDF
40. A clostripain‐like protease plays a major role in generating the secretome of enterotoxigenic Bacteroides fragilis.
- Author
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Pierce, Jessica V., Fellows, Justin D., Anderson, D. Eric, and Bernstein, Harris D.
- Subjects
BACTEROIDES fragilis ,CELL physiology ,EPITHELIAL cells ,LIPOPROTEINS ,PROTEOLYTIC enzymes ,GENES - Abstract
Bacteroides fragilis toxin (BFT) is a protein secreted by enterotoxigenic (ETBF) strains of B. fragilis. BFT is synthesized as a proprotein (proBFT) that is predicted to be a lipoprotein and that is cleaved into two discrete fragments by a clostripain‐like protease called fragipain (Fpn). In this study, we obtained evidence that Fpn cleaves proBFT following its transport across the outer membrane. Remarkably, we also found that the disruption of the fpn gene led to a strong reduction in the level of >100 other proteins, many of which are predicted to be lipoproteins, in the culture medium of an ETBF strain. Experiments performed with purified Fpn provided direct evidence that the protease releases at least some of these proteins from the cell surface. The observation that wild‐type cells outcompeted an fpn‐ strain in co‐cultivation assays also supported the notion that Fpn plays an important role in cell physiology and is not simply dedicated to toxin biogenesis. Finally, we found that purified Fpn altered the adhesive properties of HT29 intestinal epithelial cells. Our results suggest that Fpn is a broad‐spectrum protease that not only catalyzes the protein secretion on a wide scale but that also potentially cleaves host cell proteins during colonization. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
41. Antibiotic uptake in Gram-negative bacteria
- Author
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Muheim, Claudio
- Subjects
Outer membrane ,Gram-negative bacteria ,Biochemistry and Molecular Biology ,Lipopolysaccharide ,Antibiotic uptake ,Biokemi och molekylärbiologi - Abstract
The increasing emergence and spread of antibiotic-resistant bacteria is a serious threat to public health. Of particular concern are Gram-negative bacteria such as Escherichia coli, Acinetobacter baumannii, Klebsiella pneumoniae or Pseudomonas aeruginosa. Some of these strains are resistant to a large number of antibiotics and thus our treatment options are rapidly declining. In addition to the increasing number of antibiotic-resistant bacteria, a major problem is that many of the antibiotics at our disposal are ineffective against Gram-negative bacteria. This is partly due to the properties of the outer membrane (OM) which prevents efficient uptake. The overarching goal of this thesis was to investigate how the OM of the Gram-negative bacterium E. coli could be weakened to improve the activity of antibiotics. In the first two papers of my thesis (paper I + II), I investigated the periplasmic chaperone network which consists of the two parallel pathways SurA and Skp/DegP. This network is essential for the integrity of the OM and strains lacking either SurA or Skp are defective in the assembly of the OM, which results in an increased sensitivity towards vancomycin and other antimicrobials. We identified a novel component of the periplasmic chaperone network, namely YfgM, and showed that it operates in the same network as Skp and SurA/DegP. In particular, we demonstrated that deletion of YfgM in strains with either a ΔsurA or Δskp background further compromised the integrity of the OM, as evidenced by an increased sensitivity towards vancomycin. In the remaining two papers of my thesis (paper III + IV), the goal was to characterize small molecules that permeabilize the OM and thus could be used to improve the activity of antibiotics. Towards this goal, we performed a high-throughput screen and identified an inhibitor of the periplasmic chaperone LolA, namely MAC-13243, and showed that it can be used to permeabilize the OM of E. coli (paper III). We further demonstrated that MAC-13243 can be used to potentiate the activity of antibiotics which are normally ineffective against E. coli. In the last paper of my thesis (paper IV), we undertook a more specific approach and wanted to identify an inhibitor against the glycosyltransferase WaaG. This enzyme is involved in the synthesis of LPS and genetic inactivation of WaaG results in a defect in the OM, which leads to an increased sensitivity to various antibiotics. In this paper, we identified a small molecular fragment (compound L1) and showed that it can be used to inhibit the activity of WaaG in vitro. To summarize, this thesis provides novel insights into how the OM of the Gram-negative bacterium E. coli can be weakened by using small molecules. We believe that the two identified small molecules represent important first steps towards the design of more potent inhibitors that could be used in clinics to enhance the activity of antibiotics. At the time of the doctoral defense, the following paper was unpublished and had a status as follows: Paper 3: Manuscript.
- Published
- 2017
42. In Silico Study of Different Signal Peptides to Express Recombinant Glutamate Decarboxylase in the Outer Membrane of Escherichia coli
- Author
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Yarabbi, Hanieh, Mortazavi, Seyed Ali, Yavarmanesh, Masoud, and Javadmanesh, Ali
- Published
- 2020
- Full Text
- View/download PDF
43. Recent advances in the understanding of trimeric autotransporter adhesins
- Author
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Kiessling, Andreas R., Malik, Anchal, and Goldman, Adrian
- Published
- 2020
- Full Text
- View/download PDF
44. Insights into the structure of Escherichia coli outer membrane as the target for engineering microbial cell factories
- Author
-
Wang, Jianli, Ma, Wenjian, and Wang, Xiaoyuan
- Published
- 2021
- Full Text
- View/download PDF
45. Porin threading drives receptor disengagement and establishes active colicin transport through Escherichiacoli OmpF
- Author
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Francis, Marie‐Louise R, Webby, Melissa N, Housden, Nicholas G, Kaminska, Renata, Elliston, Emma, Chinthammit, Boonyaporn, Lukoyanova, Natalya, and Kleanthous, Colin
- Published
- 2021
- Full Text
- View/download PDF
46. Antibacterial activity and action mode of chlorogenic acid against Salmonella Enteritidis, a foodborne pathogen in chilled fresh chicken.
- Author
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Sun, Zhilan, Zhang, Xinxiao, Wu, Haihong, Wang, Hongyi, Bian, Huan, Zhu, Yongzhi, Xu, Weimin, Liu, Fang, Wang, Daoying, and Fu, Longyun
- Subjects
SALMONELLA enteritidis ,CHLOROGENIC acid ,FOOD pathogens ,MALATE dehydrogenase ,SUCCINATE dehydrogenase ,DEHYDROGENASES ,FOODBORNE diseases - Abstract
The study evaluated the antibacterial activity of chlorogenic acid (CA) against Salmonella Enteritidis S1, a foodborne pathogen in chilled fresh chicken. Its minimum inhibitory concentration for S. Enteritidis S1 was 2 mM. 1 MIC CA treatment reduced the viable count of S. Enteritidis S1 by 3 log cfu/g in chilled fresh chicken. Scanning electron microscopy examination indicated that CA induced the cell envelope damage of S. Enteritidis S1. Following this, 1-N-Phenylnaphthylamine assay and LPS content analysis indicated that CA induced the permeability of outer membrane (OM). Confocal laser scanning microscopy examination further demonstrated that CA acted on the inner membrane (IM). To support this, the release of intracellular protein and ATP after CA treatment was also observed. CA also suppressed the activities of malate dehydrogenase and succinate dehydrogenase, two main metabolic enzymes in TCA cycle and electron transport chain. Thus, damage of intracelluar and outer membranes as well as disruption of cell metabolism resulted in cell death eventually. The finding suggested that CA has the potential to be developed as a preservative to control S. Enteritidis associated foodborne diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
47. Binding of HasA by its transmembrane receptor HasR follows a conformational funnel mechanism
- Author
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Exner, Thomas E., Becker, Stefanie, Becker, Simon, Boniface-Guiraud, Audrey, Delepelaire, Philippe, Diederichs, Kay, and Welte, Wolfram
- Published
- 2020
- Full Text
- View/download PDF
48. Characterization of Cell Envelope Multiple Mutants of Brucella ovis and Assessment in Mice of Their Vaccine Potential.
- Author
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Sidhu-Muñoz, Rebeca Singh, Sancho, Pilar, Cloeckaert, Axel, Zygmunt, Michel Stanislas, de Miguel, María Jesús, Tejedor, Carmen, and Vizcaíno, Nieves
- Subjects
BRUCELLA ,CELL envelope (Biology) ,BACTERIAL vaccines - Abstract
Brucella ovis is a non-zoonotic Brucella species lacking specific vaccine. It presents a narrow host range, a unique biology relative to other Brucella species, and important distinct surface properties. To increase our knowledge on its peculiar surface and virulence features, and seeking to develop a specific vaccine, multiple mutants for nine relevant cell-envelope-related genes were investigated. Mutants lacking Omp10 plus Omp19 could not be obtained, suggesting that at least one of these lipoproteins is required for viability. A similar result was obtained for the double deletion of omp31 and omp25 that encode two major surface proteins. Conversely, the absence of major Omp25c (proved essential for internalization in HeLa cells) together with Omp25 or Omp31 was tolerated by the bacterium. Although showing important in vitro and in vivo defects, the Δ omp10 Δ omp31 Δ omp25c mutant was obtained, demonstrating that B. ovis PA survives to the simultaneous absence of Omp10 and four out seven proteins of the Omp25/Omp31 family (i.e., Omp31, Omp25c, Omp25b, and Omp31b, the two latter naturally absent in B. ovis). Three multiple mutants were selected for a detailed analysis of virulence in the mouse model. The Δ omp31 Δ cgs and Δ omp10 Δ omp31 Δ omp25c mutants were highly attenuated when inoculated at 10
6 colony forming units/mouse but they established a persistent infection when the infection dose was increased 100-fold. The Δ omp10 Δ ugpB Δ omp31 mutant showed a similar behavior until week 3 post-infection but was then totally cleared from spleen. Accordingly, it was retained as vaccine candidate for mice protection assays. When compared to classical B. melitensis Rev1 heterologous vaccine, the triple mutant induced limited splenomegaly, a significantly higher antibody response against whole B. ovis PA cells, an equivalent memory cellular response and, according to spleen colonization measurements, better protection against a challenge with virulent B. ovis PA. Therefore, it would be a good candidate to be evaluated in the natural host as a specific vaccine against B. ovis that would avoid the drawbacks of B. melitensis Rev1. In addition, the lack in this attenuated strain of Omp31, recognized as a highly immunogenic protein during B. ovis infection, would favor the differentiation between infected and vaccinated animals using Omp31 as diagnostic target. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
49. Phospholipid retention in the absence of asymmetry strengthens the outer membrane permeability barrier to last-resort antibiotics.
- Author
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Powers, Matthew J. and Trent, M. Stephen
- Subjects
PHOSPHOLIPIDS ,GRAM-negative bacteria ,ANTIBIOTICS ,CELL membranes ,MEMBRANE proteins - Abstract
The outer membrane of Gram-negative bacteria is a critical barrier that prevents entry of noxious compounds. Integral to this functionality is the presence of lipopolysaccharide (LPS) or lipooligosaccharide (LOS), a molecule that is located exclusively in the outer leaflet of the outer membrane. Its lipid anchor, lipid A, is a glycolipid whose hydrophobicity and net negative charge are primarily responsible for the robustness of the membrane. Because of this, lipid A is a hallmark of Gram-negative physiology and is generally essential for survival. Rare exceptions have been described, including Acinetobacter baumannii,whichcan survive in the absence of lipid A, albeit with significant growth and membrane permeability defects. Here, we show by an evolution experiment that LOS-deficient A. baumannii can rapidly improve fitness over the course of only 120 generations. We identified two factors which negatively contribute to fitness in the absence of LOS,Mla and PldA. These proteins are involved in glycerophospholipid transport (Mla) and lipid degradation (PldA); both are active only on mislocalized, surface-exposed glycerophospholipids. Elimination of these two mechanisms was sufficient to cause a drastic fitness improvement in LOS-deficient A. baumannii. The LOS-deficient double mutant grows as robustly as LOS-positive wild-type bacteriawhile remaining resistant to the last-resort polymyxin antibiotics. These data provide strong biological evidence for the directionality of Mla-mediated glycerophospholipid transport in Gramnegative bacteria and furthers our knowledge of asymmetrymaintenancemechanisms in the context of the outer membrane barrier. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
50. C-terminal kink formation is required for lateral gating in BamA.
- Author
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Lundquist, Karl, Bakelar, Jeremy, Noinaj, Nicholas, and Gumbart, James C.
- Subjects
GRAM-negative bacteria ,MEMBRANE proteins ,LIPOPROTEINS ,MOLECULAR dynamics ,MUTAGENESIS - Abstract
In Gram-negative bacteria, the outer membrane contains primarily β-barrel transmembrane proteins and lipoproteins. The insertion and assembly of β-barrel outer-membrane proteins (OMPs) is mediated by the β-barrel assembly machinery (BAM) complex, the core component of which is the 16-stranded transmembrane β-barrel BamA. Recent studies have indicated a possible role played by the seam between the first and last β-barrel strands of BamA in the OMP insertion process through lateral gating and a destabilized membrane region. In this study, we have determined the stability and dynamics of the lateral gate through over 12.5 μs of equilibrium simulations and 4 μs of free-energy calculations. From the equilibrium simulations, we have identified a persistent kink in the C-terminal strand and observed spontaneous lateral-gate separation in a mimic of the native bacterial outer membrane. Free-energy calculations of lateral gate opening revealed a significantly lower barrier to opening in the C-terminal kinked conformation; mutagenesis experiments confirm the relevance of C-terminal kinking to BamA structure and function. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
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