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3 results on '"Alexandre R. Franco"'

1. Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility

Author

Dylan Martin, Sunitha Basodi, Sandeep Panta, Kelly Rootes-Murdy, Paul Prae, Anand D. Sarwate, Ross Kelly, Javier Romero, Bradley T. Baker, Harshvardhan Gazula, Jeremy Bockholt, Jessica A. Turner, Nathalia B. Esper, Alexandre R. Franco, Sergey Plis, and Vince D. Calhoun

Subjects
COINSTAC, neuroimaging, federated learning, reproducibility, open science, datasets, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571
Abstract

Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tackles these challenges through federated analysis, allowing researchers to analyze datasets without publicly sharing their data. This paper presents a significant enhancement to the COINSTAC platform: COINSTAC Vaults (CVs). CVs are designed to further reduce barriers by hosting standardized, persistent, and highly-available datasets, while seamlessly integrating with COINSTAC's federated analysis capabilities. CVs offer a user-friendly interface for self-service analysis, streamlining collaboration, and eliminating the need for manual coordination with data owners. Importantly, CVs can also be used in conjunction with open data as well, by simply creating a CV hosting the open data one would like to include in the analysis, thus filling an important gap in the data sharing ecosystem. We demonstrate the impact of CVs through several functional and structural neuroimaging studies utilizing federated analysis showcasing their potential to improve the reproducibility of research and increase sample sizes in neuroimaging studies.

Published
2023
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2. Resting-State fMRI to Identify the Brain Correlates of Treatment Response to Medications in Children and Adolescents With Attention-Deficit/Hyperactivity Disorder: Lessons From the CUNMET Study

Author

Michael P. Milham, Cesar Soutullo, María Vallejo-Valdivielso, M. Reyes Garcia de Eulate, Miguel Fernandez-Martinez, Francisco X. Castellanos, Alexandre R. Franco, Victor Pereira-Sanchez, Pilar de Castro-Manglano, Azucena Díez-Suárez, and María A. Fernández-Seara

Subjects
Open science, RC435-571, Neuroimaging, open science, medicine, Attention deficit hyperactivity disorder, resting state, reproducibility, Psychiatry, medicine.diagnostic_test, Resting state fMRI, business.industry, Methylphenidate, fMRI, functional connectivity, attention-deficit/hyperactivity disorder (ADHD), medicine.disease, Psychiatry and Mental health, Lisdexamfetamine, stimulants, Perspective, Personalized medicine, business, Functional magnetic resonance imaging, feasibility, medicine.drug, Clinical psychology
Abstract

Neuroimaging research seeks to identify biomarkers to improve the diagnosis, prognosis, and treatment of attention-deficit/hyperactivity disorder (ADHD), although clinical translation of findings remains distant. Resting-state functional magnetic resonance imaging (R-fMRI) is increasingly being used to characterize functional connectivity in the brain. Despite mixed results to date and multiple methodological challenges, dominant hypotheses implicate hyperconnectivity across brain networks in patients with ADHD, which could be the target of pharmacological treatments. We describe the experience and results of the Clínica Universidad de Navarra (Spain) Metilfenidato (CUNMET) pilot study. CUNMET tested the feasibility of identifying R-fMRI markers of clinical response in children with ADHD undergoing naturalistical pharmacological treatments. We analyzed cross-sectional data from 56 patients with ADHD (18 treated with methylphenidate, 18 treated with lisdexamfetamine, and 20 treatment-naive patients). Standard preprocessing and statistical analyses with attention to control for head motion and correction for multiple comparisons were performed. The only results that survived correction were noted in contrasts of children who responded clinically to lisdexamfetamine after long-term treatment vs. treatment-naive patients. In these children, we observed stronger negative correlations (anticorrelations) across nodes in six brain networks, which is consistent with higher across-network functional segregation in patients treated with lisdexamfetamine, i.e., less inter-network interference than in treatment-naive patients. We also note the lessons learned, which could help those pursuing clinically relevant multidisciplinary research in ADHD en route to eventual personalized medicine. To advance reproducible open science, our report is accompanied with links providing access to our data and analytic scripts.

Published
2021

3. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Author

Selim Melvin Atay, Iska Moxon-Emre, Anders Eklund, Paula P. Brooks, Nandita Vijayakumar, Anibal Sólon Heinsfeld, Jean-Baptiste Poline, Yaroslav O. Halchenko, David Meunier, Daniela M. Hohmann, Martin Szinte, Arshitha Basavaraj, Andrija Štajduhar, Link Tejavibulya, Michael Dayan, Anisha Keshavan, Chao Jiang, Felix Hoffstaedter, Michael P. Milham, Davide Momi, Hua Xie, Ai Wern Chung, Georg Langs, Hao-Ting Wang, Xenia Kobeleva, Robert Oostenveld, Thomas G. Close, Lena Dorfschmidt, Jesse A. Brown, Serge Koudoro, J.P. Manzano-Patron, Isil P. Bilgin, Shreyas Fadnavis, Sylvain Takerkart, R. Cameron Craddock, Stephan Heunis, Scott Peltier, Kathryn Berluti, Hayli Spence, Pablo F. Damasceno, David H. O’Connor, Eleftherios Garyfallidis, Eugene P. Duff, Rudolph Pienaar, Nicolas Traut, AmanPreet Badhwar, Ali R. Khan, Marissa Laws, Abigail S. Greene, Richard A. I. Bethlehem, Angela R. Laird, Krista DeStasio, Ina Thome, Camille Maumet, Alexandru D. Iordan, P. Christiaan Klink, Damion V. Demeter, John A. Onofrey, Cassandra D. Gould van Praag, Jakub Vohryzek, Suzanne T. Witt, Aysha Motala, Valerie Hayot-Sasson, Geetika Gupta, Alexandre Rosa Franco, John W. VanMeter, Michel Thiebaut de Schotten, James M. Shine, Lucina Q. Uddin, Thomas S. Hartmann, Guillaume Flandin, Clara Moreau, Tomislav Lipic, Claire Bradley, Fernando A. Barrios, Daniel S. Margulies, R. Austin Benn, Sofie Van Den Bossche, Lydia Riedl, Xihe Xie, Christopher R. Madan, Roberto Toro, Viviana Siless, Fabrizio De Vico Fallani, Nikoloz Sirmpilatze, Emily Olafson, Anqi Qiu, Theresa W. Cheng, Valentina Borghesani, Sidhant Chopra, Claire Cury, Giorgio Marinato, Horea-Ioan Ioanas, Giorgia Cona, Michael Joseph, Angela Tam, Mathias Scharinger, Daniel A. Handwerker, Katherine L. Bottenhorn, Sina Mansour L, Kathryn L. Mills, Christopher J. Markiewicz, Elizabeth Levitis, Cyril Pernet, Stephanie J. Forkel, Agah Karakuzu, Edwina R Orchard, Sarah L. Dziura, Saige Rutherford, Kamalaker Dadi, Enrico Glerean, Desiree Lussier, Davide Poggiali, Molly Simmonite, Jason Kai, Jessica Flannery, Ting Xu, Jon Haitz Legarreta, Nasim Anousheh, Marco Bedini, Tristan Glatard, Thomas E. Nichols, Joscelin Rocha-Hidalgo, Erin W. Dickie, Dipankar Bachar, Malin Sandström, Xi-Nian Zuo, Pedro Pinheiro-Chagas, Laura C. Rice, Jakša Vukojević, Javier Gonzalez-Castillo, José C. García Alanis, Lorenzo Pasquini, Yu-Fang Yang, Matteo Mancini, Deena Shariq, Chao-Gan Yan, Laura Tomaz da Silva, César Caballero-Gaudes, Yasmine Bassil, Aurina Arnatkeviciute, Dustin Scheinost, Satrajit S. Ghosh, Gaël Varoquaux, Etienne Combrisson, Bramsh Qamar Chandio, Kelly Garner, Tiago Quendera, Patrick Friedrich, Shawn A. Rhoads, Roxane Licandro, Elizabeth DuPre, Aki Nikolaidis, Simon Schwab, Stephanie Noble, Guillaume Auzias, Daniel J. Lurie, Mahboobeh Parsapoor, Eneko Uruñuela, Andrew Doyle, Peer Herholz, Saampras Ganesan, Vincent Koppelmans, Corey Horien, Samir Das, Junaid S. Merchant, Siyuan Gao, Matheus Marcon, Nathalia Bianchini Esper, B.T. Thomas Yeo, Katja Heuer, Caroline O’Brien, Micaela Y. Chan, Sook-Lei Liew, Lindsay D. Oliver, Kirstie Whitaker, Christoph Vogelbacher, Dylan M. Nielson, Krisanne Litinas, Dorien C. Huijser, Pierre Bellec, R. Todd Constable, David N. Kennedy, Julia Sprenger, Lea-Theresa Mais, Oscar Esteban, Patrick J. Park, Patrick Callahan, Christopher R. Nolan, Johanna Bayer, Guillaume Dumas, Elise Bannier, Elizabeth A. McDevitt, Ariel Rokem, Samuel A. Nastase, Olivia W. Stanley, Ruggero Basanisi, Daniele Marinazzo, Gregory Kiar, Lisa Novello, Samuel Guay, John C. Flournoy, Stefano Moia, Kendra Oudyk, Fang-Cheng Yeh, Gustav Nilsonne, Thomas B. Shaw, Steve Wideman, Saskia Bollmann, Steffen Bollmann, Julia M. Huntenburg, Augusto Buchweitz, Matteo Visconti di Oleggio Castello, Dimitra Maoutsa, Lucy B. Whitmore, Catherine Alice Hahn, Antonino Vallesi, Remi Gau, Felipe Meneguzzi, Université Catholique de Louvain = Catholic University of Louvain (UCL), Yale University [New Haven], Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig] (IMPNSC), Max-Planck-Gesellschaft, Florida International University [Miami] (FIU), University of Reading (UOR), University of Würzburg, Champalimaud Centre for the Unknown [Lisbon], University of Melbourne, University of Cambridge [UK] (CAM), Georgetown University [Washington] (GU), Philipps Universität Marburg = Philipps University of Marburg, Université de Montréal (UdeM), University College of London [London] (UCL), University of Sussex, Universiteit Gent = Ghent University (UGENT), German Research Center for Neurodegenerative Diseases - Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Université de Sherbrooke (UdeS), Middle East Technical University [Ankara] (METU), McGill University = Université McGill [Montréal, Canada], Modelling brain structure, function and variability based on high-field MRI data (PARIETAL), Service NEUROSPIN (NEUROSPIN), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Universiteit Leiden, Karolinska Institutet [Stockholm], Princeton University, Universität Zürich [Zürich] = University of Zurich (UZH), University of the Basque Country/Euskal Herriko Unibertsitatea (UPV/EHU), University medical center and campus biotech Geneva, Emory University [Atlanta, GA], Cardiff University's Brain Research Imaging Centre [Cardiff] (CUBRIC), School of Psychology [Cardiff University], Cardiff University-Cardiff University, The University of Sydney, Weill Cornell Medicine [Cornell University], Cornell University [New York], Università degli Studi di Padova = University of Padua (Unipd), Jülich Research Centre, University of Texas at Austin [Austin], Institut Pasteur [Paris] (IP), Centre de Recherche Interdisciplinaire / Center for Research and Interdisciplinarity [Paris, France] (CRI), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Basque Center on Cognition Brain and Language [Gipuzkoa, Espagne] (BCBL), Linköping University (LIU), University of Queensland [Brisbane], University of New South Wales [Sydney] (UNSW), Universidad Nacional Autónoma de México = National Autonomous University of Mexico (UNAM), University of Maryland [College Park], University of Maryland System, University of Washington [Seattle], Harvard Medical School [Boston] (HMS), Child Mind Institute, University of Western Ontario (UWO), Indiana University [Bloomington], Indiana University System, Monash university, Institut de Neurosciences de la Timone (INT), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Neuroimagerie: méthodes et applications (Empenn), Institut National de la Santé et de la Recherche Médicale (INSERM)-Inria Rennes – Bretagne Atlantique, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-SIGNAUX ET IMAGES NUMÉRIQUES, ROBOTIQUE (IRISA-D5), Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), National Institute of Mental Health (NIMH), Università degli Studi di Trento (UNITN), Centro Nacional de Investigaciones Cardiovasculares Carlos III [Madrid, Spain] (CNIC), Instituto de Salud Carlos III [Madrid] (ISC), Queensland University of Technology [Brisbane] (QUT), University of California [San Francisco] (UC San Francisco), University of California (UC), Universidade Federal do Rio Grande do Sul [Porto Alegre] (UFRGS), University of Texas at Dallas [Richardson] (UT Dallas), University of Oregon [Eugene], Monash University [Melbourne], Boston Children's Hospital, Algorithms, models and methods for images and signals of the human brain (ARAMIS), Sorbonne Université (SU)-Inria de Paris, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut du Cerveau = Paris Brain Institute (ICM), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut du Cerveau = Paris Brain Institute (ICM), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut des Maladies Neurodégénératives [Bordeaux] (IMN), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Neuroimagerie: méthodes et applications (EMPENN), Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-SIGNAL, IMAGE ET LANGAGE (IRISA-D6), Chinese Academy of Sciences [Beijing] (CAS), Beijing Normal University (BNU), This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 867458 awarded to Julia M. Huntenburg, from ANR-19-DATA-0025 NeuroWebLab for Katja Heuer, Roberto Toro, and Nicholas Traut, and from NIH K00MH122372 for Stephanie Noble., Brainhack Community: Nasim Anousheh, Aurina Arnatkeviciute, Guillaume Auzias, Dipankar Bachar, Elise Bannier, Ruggero Basanisi, Arshitha Basavaraj, Marco Bedini, Pierre Bellec, R Austin Benn, Kathryn Berluti, Steffen Bollmann, Saskia Bollmann, Claire Bradley, Jesse Brown, Augusto Buchweitz, Patrick Callahan, Micaela Y Chan, Bramsh Q Chandio, Theresa Cheng, Sidhant Chopra, Ai Wern Chung, Thomas G Close, Etienne Combrisson, Giorgia Cona, R Todd Constable, Claire Cury, Kamalaker Dadi, Pablo F Damasceno, Samir Das, Fabrizio De Vico Fallani, Krista DeStasio, Erin W Dickie, Lena Dorfschmidt, Eugene P Duff, Elizabeth DuPre, Sarah Dziura, Nathalia B Esper, Oscar Esteban, Shreyas Fadnavis, Guillaume Flandin, Jessica E Flannery, John Flournoy, Stephanie J Forkel, Alexandre R Franco, Saampras Ganesan, Siyuan Gao, José C García Alanis, Eleftherios Garyfallidis, Tristan Glatard, Enrico Glerean, Javier Gonzalez-Castillo, Cassandra D Gould van Praag, Abigail S Greene, Geetika Gupta, Catherine Alice Hahn, Yaroslav O Halchenko, Daniel Handwerker, Thomas S Hartmann, Valérie Hayot-Sasson, Stephan Heunis, Felix Hoffstaedter, Daniela M Hohmann, Corey Horien, Horea-Ioan Ioanas, Alexandru Iordan, Chao Jiang, Michael Joseph, Jason Kai, Agah Karakuzu, David N Kennedy, Anisha Keshavan, Ali R Khan, Gregory Kiar, P Christiaan Klink, Vincent Koppelmans, Serge Koudoro, Angela R Laird, Georg Langs, Marissa Laws, Roxane Licandro, Sook-Lei Liew, Tomislav Lipic, Krisanne Litinas, Daniel J Lurie, Désirée Lussier, Christopher R Madan, Lea-Theresa Mais, Sina Mansour L, J P Manzano-Patron, Dimitra Maoutsa, Matheus Marcon, Daniel S Margulies, Giorgio Marinato, Daniele Marinazzo, Christopher J Markiewicz, Camille Maumet, Felipe Meneguzzi, David Meunier, Michael P Milham, Kathryn L Mills, Davide Momi, Clara A Moreau, Aysha Motala, Iska Moxon-Emre, Thomas E Nichols, Dylan M Nielson, Gustav Nilsonne, Lisa Novello, Caroline O'Brien, Emily Olafson, Lindsay D Oliver, John A Onofrey, Edwina R Orchard, Kendra Oudyk, Patrick J Park, Mahboobeh Parsapoor, Lorenzo Pasquini, Scott Peltier, Cyril R Pernet, Rudolph Pienaar, Pedro Pinheiro-Chagas, Jean-Baptiste Poline, Anqi Qiu, Tiago Quendera, Laura C Rice, Joscelin Rocha-Hidalgo, Saige Rutherford, Mathias Scharinger, Dustin Scheinost, Deena Shariq, Thomas B Shaw, Viviana Siless, Molly Simmonite, Nikoloz Sirmpilatze, Hayli Spence, Julia Sprenger, Andrija Stajduhar, Martin Szinte, Sylvain Takerkart, Angela Tam, Link Tejavibulya, Michel Thiebaut de Schotten, Ina Thome, Laura Tomaz da Silva, Nicolas Traut, Lucina Q Uddin, Antonino Vallesi, John W VanMeter, Nandita Vijayakumar, Matteo Visconti di Oleggio Castello, Jakub Vohryzek, Jakša Vukojević, Kirstie Jane Whitaker, Lucy Whitmore, Steve Wideman, Suzanne T Witt, Hua Xie, Ting Xu, Chao-Gan Yan, Fang-Cheng Yeh, B T Thomas Yeo, Xi-Nian Zuo, ANR-19-DATA-0025,NeuroWebLab,Un laboratoire de neuroscience collectif: Au delà de FAIR(2019), European Project: 867458,LC-FMR, Maumet, Camille, Un laboratoire de neuroscience collectif: Au delà de FAIR - - NeuroWebLab2019 - ANR-19-DATA-0025 - DONNEES - VALID, Brainhack: Developing a culture of open, inclusive, community-driven neuroscience - LC-FMR - 867458 - INCOMING, Leiden University, Weill Cornell Medicine [New York], Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPC), Universiteit Gent = Ghent University [Belgium] (UGENT), University Hospital Bonn, Sherbrooke Connectivity Imaging Lab [Sherbrooke] (SCIL), Département d'informatique [Sherbrooke] (UdeS), Faculté des sciences [Sherbrooke] (UdeS), Université de Sherbrooke (UdeS)-Université de Sherbrooke (UdeS)-Faculté des sciences [Sherbrooke] (UdeS), Université de Sherbrooke (UdeS)-Université de Sherbrooke (UdeS), Videos and Images Theory and Analytics Laboratory (VITAL), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Service NEUROSPIN (NEUROSPIN), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Erasmus University Rotterdam, Origami (Origami), Laboratoire d'InfoRmatique en Image et Systèmes d'information (LIRIS), Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-École Centrale de Lyon (ECL), Université de Lyon-Université Lumière - Lyon 2 (UL2)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Université Lumière - Lyon 2 (UL2), Princeton Neuroscience Institute [Princeton], Human Neuroscience Platform, Brighton and Sussex Medical School (BSMS), Azienda Ospedale Università di Padova = Hospital-University of Padua (AOUP), Institute of Neuroscience and Medicine [Jülich] (INM-1), Département de Neuroscience - Department of Neuroscience, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPC), Queensland Brain Institute, Universidad Nacional Autónoma de México (UNAM), Radboud university [Nijmegen], McGovern Institute for Brain Research [Cambridge], Massachusetts Institute of Technology (MIT), The Brainhack Community - https://pubmed.ncbi.nlm.nih.gov/33932337, Philipps University of Marburg, University of the Basque Country [Bizkaia] (UPV/EHU), Universita degli Studi di Padova, Philipps Universität Marburg, Institut Pasteur [Paris], Empenn, Université de Bretagne Sud (UBS)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National de Recherche en Informatique et en Automatique (Inria)-École normale supérieure - Rennes (ENS Rennes)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-CentraleSupélec-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Bretagne Sud (UBS)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-École normale supérieure - Rennes (ENS Rennes)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), University of California [San Francisco] (UCSF), University of California, Geochemistry, and University of Padova [Padova, Italy]

Subjects
0301 basic medicine, Open science, Community building, Best practice, Neuroscience(all), Brainhack, Article, neuroscience, 03 medical and health sciences, 0302 clinical medicine, best practices, collaboration, community building, hackathon, inclusivity, open science, reproducibility, training, Congresses as Topic, Neurosciences, Practice Guidelines as Topic, Communication, Internet, Research community, Medical Bioscience, Psychology, ddc:610, Sociology, Brainhack Community, Training, Neurology & Neurosurgery, Scientific progress, organization & administration [Neurosciences], General Neuroscience, [SCCO.NEUR]Cognitive science/Neuroscience, [SCCO.NEUR] Cognitive science/Neuroscience, Medicinsk biovetenskap, 030104 developmental biology, [SDV.IB]Life Sciences [q-bio]/Bioengineering, Cognitive Sciences, Engineering ethics, 030217 neurology & neurosurgery
Abstract

Available online 30 April 2021. Brainhack is an innovative meeting format that promotes scientific collaboration and education in an open, inclusive environment. This NeuroView describes the myriad benefits for participants and the research community and how Brainhacks complement conventional formats to augment scientific progress. The present manuscript is part of a growing community effort to collate Brainhack-related insights and expertise into a Jupyter Book (http://brainhack.org/brainhack_jupyter_book/) that will serve as a centralized set of resources for the community; we acknowledge all the individuals who contributed and will make ongoing contributions to these resources. A pre-print version of the present manuscript is available as part of the Jupyter Book. Moreover, we would like to acknowledge all Brainhack organizers, supporters, presenters, and participants for their contribution to growing and maintaining this community. The benefits described in this manuscript would not be possible without them. We also thank all institutions, labs, and organizations who have helped this community grow, meet in stimulating environments, and add an excellent educational resource pool and agenda. With an expanding community, Brainhack’s support network keeps growing, and we thank all labs and individual researchers for their dedication and expertise offered to this community (see http://brainhack.org/brainhack_jupyter_book/acknowledgments.html for a full list of individual acknowledgments; an updated list will be maintained in the Jupyter Book). Grants and funding bodies: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 867458 awarded to Julia M. Huntenburg; from ANR-19-DATA-0025 NeuroWebLab for Katja Heuer, Roberto Toro, and Nicholas Traut; and from NIH K00MH122372 for Stephanie Noble. The Brainhack Community member list and contributions of the different authors are detailed at http://brainhack.org/brainhack_jupyter_book/contributors.html. Our crediting system is described here: http://brainhack.org/brainhack_jupyter_book/neuroview_authorship-agreement.html.

Published
2021

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