1. Interferon- and STING-independent induction of type I interferon stimulated genes during fractionated irradiation
- Author
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Luuk ten Kroode, Syed Haider, Iris A. Schulkens, Sarah Derks, Kitty C. M. Castricum, Ruben S. A. Goedegebuure, Adrian L. Harris, Anne-Marie van Berkel, Francesca M. Buffa, Henk M.W. Verheul, Maarten A. J. M. Jacobs, Ben J. Slotman, Victor L. J. L. Thijssen, Esther A. Kleibeuker, Nicole C.T. van Grieken, Jaap van den Berg, Internal medicine, VU University medical center, Radiation Oncology, Gastroenterology and hepatology, Pathology, CCA - Cancer biology and immunology, Amsterdam Gastroenterology Endocrinology Metabolism, and Medical oncology laboratory
- Subjects
0301 basic medicine ,BIOMEDICAL RESEARCH, HEALTH RESEARCH, DATA SCIENCE, BIOINFORMATICS, GENOMICS, IMMUNE RESPONSE, RADIOTHERAPY, TYPE I INTERFERONS ,Cancer Research ,Esophageal Neoplasms ,Mice ,Random Allocation ,Tumours of the digestive tract Radboud Institute for Health Sciences [Radboudumc 14] ,0302 clinical medicine ,Interferon ,Gene expression ,HEALTH RESEARCH ,RC254-282 ,Mice, Inbred BALB C ,BIOINFORMATICS ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,BIOMEDICAL RESEARCH ,Gene Expression Regulation, Neoplastic ,Oncology ,030220 oncology & carcinogenesis ,Colonic Neoplasms ,Interferon Type I ,Female ,Signal transduction ,HT29 Cells ,medicine.drug ,DATA SCIENCE ,Mice, Nude ,Astrocytoma ,Biology ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,Cell Line, Tumor ,medicine ,Type I interferons ,Animals ,Humans ,Immune response ,Gene knockout ,Radiotherapy ,Microarray analysis techniques ,Research ,Immunity ,Membrane Proteins ,Xenograft Model Antitumor Assays ,Sting ,030104 developmental biology ,Apoptosis ,Cancer cell ,Cancer research ,Dose Fractionation, Radiation ,GENOMICS - Abstract
Background Improvement of radiotherapy efficacy requires better insight in the dynamic responses that occur during irradiation. Here, we aimed to identify the molecular responses that are triggered during clinically applied fractionated irradiation. Methods Gene expression analysis was performed by RNAseq or microarray analysis of cancer cells or xenograft tumors, respectively, subjected to 3–5 weeks of 5 × 2 Gy/week. Validation of altered gene expression was performed by qPCR and/or ELISA in multiple cancer cell lines as well as in pre- and on-treatment biopsies from esophageal cancer patients (NCT02072720). Targeted protein inhibition and CRISPR/Cas-induced gene knockout was used to analyze the role of type I interferons and cGAS/STING signaling pathway in the molecular and cellular response to fractionated irradiation. Results Gene expression analysis identified type I interferon signaling as the most significantly enriched biological process induced during fractionated irradiation. The commonality of this response was confirmed in all irradiated cell lines, the xenograft tumors and in biopsies from esophageal cancer patients. Time-course analyses demonstrated a peak in interferon-stimulated gene (ISG) expression within 2–3 weeks of treatment. The response was accompanied by a variable induction of predominantly interferon-beta and/or -lambda, but blocking these interferons did not affect ISG expression induction. The same was true for targeted inhibition of the upstream regulatory STING protein while knockout of STING expression only delayed the ISG expression induction. Conclusions Collectively, the presented data show that clinically applied fractionated low-dose irradiation can induce a delayed type I interferon response that occurs independently of interferon expression or STING signaling. These findings have implications for current efforts that aim to target the type I interferon response for cancer treatment.
- Published
- 2021