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The article offers information on the ocean currents surrounding Australia and have controlling influence on its climate, ecosystems, water quality, transport of ocean debris and fish migrations. Topics discussed include the entry of water from the Pacific Ocean to the Indonesian Archipelago through the Mindanao Current and Halmahera Sea, the Leeuwin Current, seasonal variation in the strength of the boundary currents in the Indian Ocean, the East Australian Current and impact of the currents.

The technical steps involved in configuring a regional ocean model are analogous for all community models. All require the generation of a model grid, preparation and interpolation of topography, initial conditions, and forcing fields. Each task in configuring a regional ocean model is straightforward - but the process of downloading and reformatting data can be time-consuming. For an experienced modeller, the configuration of a new model domain can take as little as a few hours - but for an inexperienced modeller, it can take much longer. In pursuit of technical efficiency, the Australian ocean modelling community has developed the Web-based MARine Virtual Laboratory (WebMARVL). WebMARVL allows a user to quickly and easily configure an ocean general circulation or wave model through a simple interface, reducing the time to configure a regional model to a few minutes. Through WebMARVL, a user is prompted to define the basic options needed for a model configuration, including the model, run duration, spatial extent, and input data. Once all aspects of the configuration are selected, a series of data extraction, reprocessing, and repackaging services are run, and a "take-away bundle" is prepared for download. Building on the capabilities developed under Australia's Integrated Marine Observing System, WebMARVL also extracts all of the available observations for the chosen time-space domain. The user is able to download the takeaway bundle and use it to run the model of his or her choice. Models supported byWebMARVL include three community ocean general circulation models and two community wave models. The model configuration from the take-away bundle is intended to be a starting point for scientific research. The user may subsequently refine the details of the model set-up to improve the model performance for the given application. In this study,WebMARVL is described along with a series of results from test cases comparing WebMARVL-configured models to observations and manually configured models. It is shown that the automatically configured model configurations produce a good starting point for scientific research. [ABSTRACT FROM AUTHOR]

The circulation driven by wave breaking, tides and winds within a fringing coral reef system (Ningaloo Reef) in Western Australia was investigated using the ocean circulation model ROMS two-way coupled to the wave model SWAN. Currents within the system were dominantly forced by wave breaking, with flow driven over the shallow reefs and towards the lagoon, which returned to the ocean through channels in the reef. Hindcast model simulations were compared against an extensive field dataset, revealing that the coupled wave-circulation model could accurately predict the waves and currents throughout this morphologically complex reef-lagoon system. A detailed momentum budget analysis showed that, over the reef, a dominant cross-shore balance was established between radiation stress gradients and a pressure (mean water level) gradient (similar to a beach). Within the lagoon, alongshore currents were primarily balanced by alongshore gradients in wave setup, which drove flow towards (and ultimately out) the channels. The importance of these wave-driven currents to Ningaloo Reef was quantified over a full seasonal cycle, during periods when wave and wind conditions significantly differed. These results showed that wave breaking still overwhelmingly dominated the circulation and flushing of Ningaloo Reef throughout the year, with winds playing an insignificant role. [ABSTRACT FROM AUTHOR]

Abstract: Surface and sub-surface currents along the ocean boundary of Western Australia were simulated using Regional Ocean Modelling System (ROMS) to examine the circulation within the Perth Canyon. Two major current systems influenced the circulation within the canyon: (1) The Leeuwin current interacted weakly with the canyon as the majority of the canyon was below the depth of the Leeuwin current and (2) Leeuwin undercurrent interacted strongly with the canyon, forming eddies within the canyon at depths of 400–800m. The results indicated that within the canyon, the current patterns changed continuously although there were some repeated patterns. Recurrent eddies produced regions where upwelling or downwelling dominated during the model runs. Deep upwelling was stronger within the canyon than elsewhere on the shelf, but vertical transport in the upper ocean was strong everywhere when wind forcing was applied. Upwelling alone appeared to be insufficient to transport nutrients to the euphotic zone because the canyon rims were deep. Increased upwelling, combined with entrapment within eddies and strong upwelling-favourable winds, which could assist mixing, may account for the high productivity attributed to the canyon. The Leeuwin current is otherwise a strong barrier to the upwelling of nutrients. [Copyright &y& Elsevier]

Abstract: Surf zone drifters and a current meter were used to study the nearshore circulation patterns in the lee of groynes at Cottesloe Beach and City Beach in Western Australia. The circulation patterns revealed that a persistent re-circulation cell was present in the lee of the groyne which was driven by changes in wave set-up resulting from lower wave heights in the lee of the groyne. The re-circulation consisted of a longshore current directed towards the groyne which was deflected offshore due to groyne resulting in a rip current along the groyne face. The offshore-flowing rip current and the incoming waves converged at the offshore extent of this circulation cell, with the deflection of the rip current parallel to the shoreline and then completing the recirculation through an onshore component. The Eulerian measurements revealed that 55% of the currents on the lee side of the groyne were directed offshore and that these currents had a maximum speed of 2ms−1. Spectral analysis of the wave heights and the currents revealed several corresponding peaks in the measured spectral densities with timescales between 12s and 50min. Numerical simulations of an idealised beach with a shore-normal groyne were conducted using a circulation model driven by waves, and confirmed the formation of a persistent eddy in the lee of the groyne. Sensitivity studies indicated that the incident wave angle, wave period, and especially the wave height controlled the circulation. The eddy vorticity, a measure of an eddy''s strength, increased roughly proportional to an increase in the incident wave energy flux. [Copyright &y& Elsevier]

Abstract: Conceptual models of circulation theorise that the dominant forces controlling estuarine circulation are freshwater discharge from the riverine section (landward), tidal forcing from the ocean boundary, and gravitational circulation resulting from along-estuary gradients in density. In micro-tidal estuaries, sub-tidal water level changes (classified as those with periods between 3 and 10 days) with amplitudes comparable to the spring tidal range can significantly influence the circulation and distribution of water properties. Field measurements obtained from the Swan River Estuary, a diurnal, micro-tidal estuary in south-western Australia, indicated that sub-tidal water level changes at the ocean boundary were predominantly from remotely forced continental shelf waves (CSWs). The sub-tidal water levels had maximum amplitudes of 0.8m, were comparable to the maximum tidal range of 0.6m, propagated into the estuary to its tidal limit, and modified water levels in the whole estuary over several days. These oscillations dominated the circulation and distribution of water properties in the estuary through changing the salt wedge location and increasing the bottom water salinity by 7 units over 3 days. The observed salt wedge excursion forced by CSW was up to 5km, whereas the maximum tidal excursion was 1.2km. The response of the residual currents and the salinity distribution lagged behind the water level changes by ∼24h. It was proposed that the sub-tidal forcing at the ocean boundary, which changed the circulation, salinity, and dissolved oxygen in the upper estuary, was due to a combination of two processes: (1) a gravity current generated by a process similar to a lock exchange mechanism and (2) amplified along-estuary density gradients in the upper estuary, which enhanced the gravitational circulation in the estuary. The salt intrusions under the sub-tidal forcing caused the rapid movement of anoxic water upstream, with significant implications for water quality and estuarine health. [Copyright &y& Elsevier]

Abstract: Shark Bay is a large inverse estuary on the west coast of Australia. Analytical and numerical approaches were used to predict the locations and causes of fronts in Shark Bay, and the results were compared with Sea Surface Temperature and field data. The study first applies an analytical theory, widely used in studies of traditional estuaries, to predict the location of fronts, and then applies a 3-D, baroclinic hydrodynamic model to analyze advection of temperature and salinity, and their ultimate influence on density fronts within the Bay. Analytical theory defines a front as a transitional region between mixed and stratified conditions, and it postulates that the location of fronts may be predicted through the balance of stratifying and de-stratifying energy input to the water column, ‘the stratification parameter’. In Shark Bay, fronts are predicted where the stratification parameter, S =3.0. Furthermore, the distribution of the mean tidal velocity magnitude was determined to correlate to regions of high bathymetric gradients, showing that changes in water depth influence the local tidal currents, the value of the stratification parameter and by extension, the location of the fronts. However, calculation of the balance of all major energy inputs reveals a balance between evaporation-driven gravitational flow and tidal mixing in Shark Bay. A numerical model was then used to investigate the hydrodynamic processes contributing to frontal dynamics in Shark Bay. Predicted residual velocities revealed a two-layer flow regime and temperature and salinity simulations accurately reproduced the major frontal features observed at the entrances of the Bay using only tidal forcing and gravitational circulation. However, it was found that wind forcing clearly influenced the distribution of salinity, defining the shape of the major frontal feature inside the Bay. [Copyright &y& Elsevier]

Abstract: Light attenuation (K d) of photosynthetically active radiation (PAR) by chromophoric dissolved organic matter (CDOM), total suspended solids (TSS) and chlorophyll a (Chl a) were measured at nine stations along an estuarine gradient in the Swan River, Western Australia, over 15 months. There were strong spatial gradients associated with the marine-freshwater transition along the 32km of estuary sampled, as well as seasonal gradients mainly associated with rainfall, ∼80% of which occurs between May and September. CDOM absorbances at 440nm reached a maximum of 10.9m−1 with the freshwater inflow but concentrations of suspended matter remained low throughout the sampling period (1.0–21.0mgl−1) under the diurnal tides of the estuary. CDOM was the dominant constituent of K d and a stepwise multiple regression showed that 66% (p <0.0001) of the variation in K d can be explained by CDOM and an additional 8% (p <0.0001) by TSS. As a consequence of this result, analysis into the influence of river discharge rates on CDOM absorbance levels was examined for 2002 using data collected during this study, and for 2000 and 2001 using historical dissolved organic carbon (DOC) and river discharge data. The outcome of this analysis infers that greater river discharge rates result in increased CDOM absorbances in the Swan River estuary. [Copyright &y& Elsevier]

Previous studies have shown that flow curvature in river bends generates a secondary circulation in the plane normal to the mean flow direction. A similar circulation pattern is shown to exist in oceanic situations when flows are subject to curvature, mainly due to interaction with topographic features. However, it is shown that, due to differences between oceanic conditions and river bends, theory and prediction methods based on the assumptions for river bends are invalid for oceanic flows. Via scaling arguments based on the equations of motion, that include both the effects of flow curvature and the Coriolis force, parameters that govern the different flow regimes are identified. The maximum strength of the secondary flow is derived for each flow regime and is verified using a three-dimensional (3-D) numerical model applied to an idealized island. It is also shown that upwelling, due to the generation of secondary flow, occurs off the tips of the headland or island, and its influence can extend far downstream. [ABSTRACT FROM AUTHOR]

A new merged high-frequency radar (HFR) data set collected using SeaSonde and WERA (WEllen RAdar) systems was used to examine the ocean surface circulation at diurnal, seasonal and inter-annual time scales along the south-west coast of Australia (SWWA), between 29°–32° S. Merging was performed after resampling WERA data on the coarser SeaSonde HFR grid and averaging data from the two HFR systems in the area of common overlap. Direct comparisons between WERA and SeaSonde vectors in their overlapping areas provided scalar and vector correlation values in the range Ru = [0.24, 0.76]; Rv = [0.39, 0.83]; ρ = [0.44, 0.75], with mean bias between velocity components in the range [−0.02, 0.28] ms−1, [−0.16, 0.16] ms−1 for the U, V components, respectively. The lower agreement between vectors was obtained in general at the boundaries of the HFR domains, where the combined effects of the bearing errors, geometrical constraints, and the limited angular field of view were predominant. The combined data set allowed for a novel characterization of the dominant features in the region, such as the warmer poleward-flowing Leeuwin Current (LC), the colder Capes Current (CC) and its northward extensions, the presence of sub-mesoscale to mesoscale eddies and their generation and aggregation areas, along with the extent offshore of the inertial-diurnal signal. The contribution of tides was weak within the entire HFR domain (<10% total variance), whilst signatures of significant inertial- and diurnal-period currents were present due to diurnal–inertial resonance. A clear discontinuity in energy and variance distribution occurred at the shelf break, which separates the continental shelf and deeper offshore regions, and defined the core of the LC. Confined between the LC and the coastline, the narrower and colder CC current was a feature during the summer months. Persistent (lifespan greater than 1 day) sub-mesoscale eddies (Rossby number O (1)) were observed at two main regions, north and south of 31.5° S, offshore of the 200 m depth contour. The majority of these eddies had diameters in the range 10–20 km with 50% more counter clockwise rotating (CCW) eddies compared to clockwise (CW) rotating eddies. The northern region was dominated by CCW eddies that were present throughout the year whilst CW eddies were prevalent in the south with lower numbers during the summer months. [ABSTRACT FROM AUTHOR]

• The first expedition to the depths of the Southern Ocean facing Bremer canyon systems. • First ROV images of these unique deep-sea environments and inhabitants (180 to 3300 m) • Discovery of spectacular 'animal forests' in the Bremer and Hood canyons. • Scleractinian corals found well below the aragonite saturation horizon (>1000 m) • Major fossil coral deposits occur at all three study areas, especially Mount Gabi. Here we present the outcomes of the first deep-sea remotely operated vehicle study of previously unexplored submarine canyon systems along the southwest Australian continental margin. This was conducted around: (1) the Bremer Marine Park; (2) the Mount Gabi seamount and nearby slope-shelf margin at the interface of the Southern and Indian oceans; with new information from (3) the Perth Canyon Marine Park located in the SE Indian Ocean. These canyons differ from many explored around the world in having no connectivity to continental river systems, thus little detrital input, with the Bremer systems and Mount Gabi facing the Southern Ocean which plays a key role in the global ocean circulation and climate systems. Such studies in the vast deep waters around the Australian continent are rare given the lack of local ROV capability available for research, thus little is known about these environments. Using the resources of the Schmidt Ocean Institute, we characterised the submarine topography from high-resolution bathymetric mapping, geology, physical and chemical oceanography, and provide an overview of these environments including the fauna observed and collected. We show that these Southern Ocean-influenced environments incorporate South Indian Central Water, Subantarctic Mode Water, Antarctic Intermediate Water, and Upper and Lower Circumpolar Deep Water, with Antarctic Bottom Water present in deep water just south of the Bremer canyon systems. The richness in megabenthos, especially along the steep, rocky substrates of the canyon heads and walls around the Bremer canyon systems, contrasts to the comparatively depauperate fauna of the more northerly Perth Canyon. Various corals serve as important substrates for a range of other species and often exhibit particular faunal associations. Especially notable are distinct ecological zones including a bryozoan and sponge-dominated (animal) forest on the shelf edge, spectacular coral gardens along canyon margins, and the occurrence of solitary scleractinians well below the aragonite saturation horizon. Subfossil coral deposits were discovered across all three study areas, reflecting periodic waxing and waning of deep-water Scleractinia throughout this southwest region. Extensive pre-modern assemblages at Mount Gabi contrast markedly with the sparse populations of living species and suggest that it might have once been a major coral hotspot, or whether they reflect long-term coral aggregations is yet to be determined. Nevertheless, stark differences in both living and past coral distribution patterns across our study sites point to at least localised fluctuations in Southern Ocean-derived nutrient and/or oxygen supplies to these deep-sea communities. [ABSTRACT FROM AUTHOR]