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Si accumulation by Synechococcus, small unicellular marine picocyanobacteria that dominate in nutrient‐depleted waters, is significant due to its potential to alter our understanding of the global Si cycle. To date, however, there are only a few studies on Si accumulation in individual Synechococcus cells. To determine the magnitude and variability of Synechococcus cellular Si content in oligotrophic oceans, we analyzed 1348 discrete cells collected from the understudied eastern Indian Ocean (EIO) and western Pacific Ocean (WPO). Synechococcus cellular Si quotas varied widely across both regions, ranging from 0 to 4651 amol Si cell−1. While highly variable in range, average Si quotas were ~ 2.5‐fold lower in Synechococcus cells from the EIO (172 ± 304 amol Si cell−1) than in those from the WPO (438 ± 737 amol Si cell−1). The estimated contributions of Synechococcus to total and picoplankton biogenic Si stocks were < 1–8% and 1–11%, respectively, suggesting that Synechococcus has a small but persistent regional contribution to biogenic Si stocks. Here, we also made a first‐order estimate of the Synechococcus biogenic Si stock for the global ocean, that is, 0.06–0.09 Tmol Si, accounting for 2–3% of the global ocean diatom Si stock. No significant effects of temperature and dissolved inorganic N and P on cellular Si quotas were observed within these oligotrophic ecosystems. However, salinity, ambient dissolved Si, and N/P ratio were closely correlated with the variable Si quotas with different relationships. In addition, Synechococcus cellular Si/P and Si/S ratios associated with physiological processes were significantly influenced by environmental and geographic variables. We thus suggest that the variance in cellular Si quotas may be indirectly driven by ambient variables via some unknown independent or strain‐dependent physiological processes. [ABSTRACT FROM AUTHOR]

Microbial communities are composed of many rare species and a few abundant species. Considering the disproportionate importance of rare species for ecosystem functioning, it is important to understand the mechanisms structuring the rare and abundant components of a diverse community in response to environmental changes. Here, we used a 16S ribosomal RNA gene sequencing approach to investigate the bacterial community diversity in the Eastern Indian Ocean (EIO) during the monsoon and intermonsoon. We employed a phylogenetic null model and network analysis to evaluate the assembly processes and co-occurrence pattern of the microbial community. We found that higher bacterial diversity was detected in the intermonsoon with high temperature and low Chlorophyll a concentrations and N/P ratios. The balance between ecological deterministic processes and stochastic processes varied with seasons in the EIO. Meanwhile, conditionally rare taxa (CRT) were more likely modulated by variable selection processes than always rare taxa (ART) and abundant taxa (AT) (CRT > ART > AT). By linking assembly process and species co-occurrence, we demonstrated that the microbial co-occurrence associations tended to be higher when deterministic processes (mainly variable selection) were weaker. This negative trend was observed in rare species rather than abundant species. The linkage could enhance our understanding of the underlying mechanisms underpinning the generation and maintenance of microbial community diversity. [ABSTRACT FROM AUTHOR]

Marine chromophytic phytoplankton are a diverse group of algae and contribute significantly to the total oceanic primary production. However, the spatial distribution of chromophytic phytoplankton is understudied in the West Pacific Ocean (WPO). In this study, we have investigated the community structure and spatial distribution of chromophytic phytoplankton using RuBisCO genes (Form ID rbc L). Our results showed that Haptophyceae, Pelagophyceae, Cyanophyceae, Xanthophyceae, and Bacillariophyceae were the dominant groups. Further, chromophytic phytoplankton can be distinguished between upwelling and non-upwelling zones of the WPO. Surface and 75 m depths of a non-upwelling area were dominated by Prochlorococcus strains, whereas chromophytic phytoplankton were homogenously distributed at the surface layer in the upwelling zone. Meanwhile, Pelagomonas -like sequences were dominant at DCM (75 m) and 150 m depths of the upwelling zone. Non-metric multidimensional scaling (NMDS) analysis did not differentiate between chromophytic phytoplankton in the upwelling and non-upwelling areas, however, it showed clear trends of them at different depths. Further, redundancy analysis (RDA) showed the influence of physicochemical parameters on the distribution of chromophytic phytoplankton. Along with phosphate (p < 0.01), temperature and other dissolved nutrients were important in driving community structure. The upwelling zone was impacted by a decrease in temperature, salinity, and re-supplement of nutrients, where Pelagomonas -like sequences outnumbered other chromophytic groups presented. [ABSTRACT FROM AUTHOR]

Simple Summary: Diazotrophs are important contributors of bioavailable nitrogen that is essential to maintaining biological productivity in marine ecosystems. In this study, surface water samples were analyzed to explore the spatial variation of the diazotrophic community in the upper seawater of the South China Sea (SCS) and the Western Pacific Ocean (WPO). The well-conserved gene nifH, which is considered an important marker gene, was used for analyzing the phylogeny, diversity, and abundance of diazotrophs in this study. Our results showed that Proteobacteria was the main diazotroph in the SCS, while Cyanobacteria accounted for the largest proportion in the diazotroph community in the WPO. In addition, high abundances of diazotrophs in the subequatorial WPO indicated the occurrence of diazotrophs blooming. Variation in the composition of diazotrophs was significantly correlated with temperature, dissolved inorganic nitrogen, dissolved inorganic phosphate, and spatial variables between these regions. Our results provide insights into the ecological success and biogeochemical importance of diazotrophic communities in changing environments. The variation of diazotrophs has been elusive in multiple SCS and WPO regions due to insufficient data. Therefore, the dynamics of diazotrophic composition and distribution were investigated in this study, based on high-throughput sequencing and quantitative PCR of the nifH gene. We found that Proteobacteria dominated the diazotrophic community in the river-impacted SCS and cyanobacteria and Proteobacteria were more abundant in the ocean-dominated SCS and WPO. The qPCR analysis showed that cyanobacterial Trichodesmium was abundant in the Pearl River plume and in the SCS basin influenced by the Kuroshio intrusion, and it also thrived in the subequatorial region of the WPO. Unicellular cyanobacteria UCYN-A were mainly detected in the river-impacted area, UCYN-B was abundant in the WPO, UCYN-C had a relatively high abundance in the ocean-dominated area, and a preponderance of γ-Proteobacteria γ-24774A11 was observed in the ocean-dominated SCS and pelagic WPO. Diazotrophic communities had significant distance–decay relationships, reflecting clear biogeographic patterns in the study area. The variations of diazotrophic community structure were well explained by dissolved inorganic nitrogen, dissolved inorganic phosphate by an eigenvector spatial variable PCNM1. These results provide further information to help determine the ecological mechanism of elusive diazotrophic communities in different ocean ecosystems. [ABSTRACT FROM AUTHOR]