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Porous silicon biosensors are by far used in optical monitoring of molecular interactions. These photonic devices could greatly benefit of integration with specific microfluidic circuits that allow small volume, and thus low consumption of reagents, fast time of incubation, and highly controlled reaction conditions. In this paper, we summarize the experience of our research group in fabrication and characterization of optical biochip, and also present new, original results on biosensing. In particular, a porous silicon based microarray of one-dimensional photonic crystals has been integrated with innovative microfluidic circuit for parallel feeding of chemical solutions. The device has been used for the label free optical monitoring of ssDNA–cDNA interaction.

Nanostructured materials, due to their peculiar physical and chemical properties, constitute the new class of functional supports for specific innovative applications. There is a strong competition between synthetic, man-made nanostructured materials and those coming directly from nature: the first ones can be precisely tailored by properly design and fabrication; the second ones are directly available without any cost of production. In this paper, we report our latest achievements on different materials, porous silicon, zinc oxide nanowires and diatomite powders, which belong to these categories.

Diatomite is a natural fossil material of sedimentary origin, composed by fragments of diatom siliceous skeletons. Due to its chemical inertness, thermal stability, high surface area, non-toxicity and biocompatibility, diatomite is considered an ideal material for the preparation of diatomite silica drug delivery nanocarriers. In this work, the properties of diatomite nanoparticles (DNPs) as potential system for drug delivery in cancer cells were exploited.

Interfaces play a key role in optical biosensor fabrication: biological molecules need to be integrated with inorganic transducers, both electrical and optical, preserving their functions and specificity. Single DNA stands, proteins, enzymes, and antibodies must be blocked on surface by absorption or covalently, depending on different chemistry used. In case of proteins and antibodies, also orientation of biological molecules is very important. In this work, we present our results on a biological passivation procedure that employs hydophobins, small amphiphilic proteins. Since these proteins complex with sugars in nature, we also suggest their utilization as functional layer in optical biosensor for glucose.

One of the most important goals in the fields of biology and medicine is the possibility to dispose of efficient tools for the characterization of the extraordinary complexity of ligand-receptor interactions. To approach this theme, we explored the use of crystalline silicon (cSi) technology for the realization of a biotechnological device in which the ligand-receptor interactions are revealed by means of optical measurements. Here, we describe a chemical procedure for the functionalization of microwell etched on silicon wafers, and the subsequent anchoring of biological molecules like an antibody anti-A20 murine lymphoma cell line. The optical analysis of the interaction on the biochips between the bound biomolecule and their corresponding ligand indicated that the functionalized cSi is suitable for this application.

Several biological organisms, from some sea shells to butterflies, exhibit sophisticated optical systems, which have been developed during the evolution of each species. The diatoms are microscopic algae enclosed between two valves of hydrated amorphous silica. These intricate structures, called frustules, show quite symmetric patterns of micrometric and nanometric pores. Their strong similarity with man-made objects suggests to exploit the optical properties of the frustules in light guiding and optical transducing. We have found very interesting results, both from the experimental and numerical points of view. Several biological organisms, from some sea shells to butterflies, exhibit sophisticated optical systems, which have been developed during the evolution of each species. The diatoms are microscopic algae enclosed between two valves of hydrated amorphous silica. These intricate structures, called frustules, show quite symmetric patterns of micrometric and nanometric pores. Their strong similarity with man-made objects suggests to exploit the optical properties of the frustules in light guiding and optical transducing. We have found very interesting results, both from the experimental and numerical points of view. © 2008 Elsevier Ltd. All rights reserved.

The development of label-free optical biosensors could have a great impact on life sciences as well as on screening techniques for medical and environmental applications. Peptide nucleic acid (PNA) is a nucleic acid analog in which the sugar phosphate backbone of natural nucleic acid has been replaced by a synthetic peptide backbone, resulting in an achiral and uncharged mimic. Due to the uncharged nature of PNA, PNA-DNA duplexes show a better thermal stability respect the DNA-DNA equivalents. In this work, we used an optical biosensor, based on the porous silicon (PSi) nanotechnology, to detect PNA-DNA interactions. PSi optical sensors are based on changes of reflectivity spectrum when they are exposed to the target analytes. The porous silicon surface was chemically modified to covalently link the PNA which acts as a very specific probe for its ligand ( c DNA).

We have fabricated a microarray of porous silicon Bragg reflectors on a crystalline silicon substrate using a technological process based on standard photolithography and electrochemical anodization of the silicon. The array density is of 170 elements/cm(2) and each element has a diameter of 200 mu m. The porous silicon structures have been used as platform to immobilize an amino terminated DNA single strand probe. All fabrication steps have been monitored by spectroscopic reflectometry, optical and electron microscopy, and Fourier transform infrared spectroscopy. A label-free detection method has been employed to investigate the hybridization between micromolar DNA probe and its complementary target. Due to fast and low cost production, good reproducibility, and high quality optical features, this platform could be adopted also for other different microarray applications such as proteomics and medical diagnostics.

Porous silicon based one-dimensional photonic crystals, such as Bragg mirror and optical microcavity, has been modified by infiltration of a new biocompatible polymer, an amino functionalized poly(e-caprolactone) (PCL-NH2), and characterized as optical biochemical sensors. The entrapped polymer adds strong chemical stability to the nanocrystalline matrix on exposure to alkaline solutions preserving the device sensing abilities in monitoring volatile substances and chemical compounds. On the basis of these results, these hybrid structures can be proposed as a high performance platform for biochemical applications.