1. Transient hysteresis and inherent stochasticity in gene regulatory networks
- Author
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Irene Otero-Muras, Antonio A. Alonso, Manuel Pájaro, Carlos Vázquez, Pájaro, Manuel, Otero-Muras, Irene, Vázquez, Carlos, Alonso, Antonio A., Pájaro, Manuel [0000-0001-7340-9737], Otero-Muras, Irene [0000-0003-2895-997X], Vázquez, Carlos [0000-0001-6591-2252], and Alonso, Antonio A. [0000-0001-8203-1799]
- Subjects
0301 basic medicine ,Bistability ,Stochastic modelling ,Molecular Networks (q-bio.MN) ,Science ,Gene regulatory network ,General Physics and Astronomy ,Dynamical Systems (math.DS) ,Cell fate determination ,Article ,General Biochemistry, Genetics and Molecular Biology ,Quantitative Biology::Cell Behavior ,03 medical and health sciences ,Condensed Matter::Materials Science ,0302 clinical medicine ,Condensed Matter::Superconductivity ,Master equation ,FOS: Mathematics ,Quantitative Biology - Molecular Networks ,Computer Simulation ,Gene Regulatory Networks ,Mathematics - Dynamical Systems ,lcsh:Science ,Physics ,Stochastic Processes ,Multidisciplinary ,Models, Genetic ,Stochastic process ,Quantitative Biology::Molecular Networks ,34C55 60H35 60G10 62P10 93E03 ,Cell Differentiation ,General Chemistry ,Cellular noise ,Regulatory networks ,Hysteresis ,030104 developmental biology ,FOS: Biological sciences ,Computer modelling ,lcsh:Q ,Biological system ,030217 neurology & neurosurgery - Abstract
7 pages, 5 figures.-- This article is licensed under a Creative Commons Attribution 4.0 International License, Cell fate determination, the process through which cells commit to differentiated states is commonly mediated by gene regulatory motifs with mutually exclusive expression states. The classical deterministic picture for cell fate determination includes bistability and hysteresis, which enables the persistence of the acquired cellular state after withdrawal of the stimulus, ensuring a robust cellular response. However, stochasticity inherent to gene expression dynamics is not compatible with hysteresis, since the stationary solution of the governing Chemical Master Equation does not depend on the initial conditions. We provide a quantitative description of a transient hysteresis phenomenon reconciling experimental evidence of hysteretic behaviour in gene regulatory networks with inherent stochasticity: under sufficiently slow dynamics hysteresis is transient. We quantify this with an estimate of the convergence rate to the equilibrium and introduce a natural landscape capturing system’s evolution that, unlike traditional cell fate potential landscapes, is compatible with coexistence at the microscopic level, M.P. and A.A.A. acknowledge funding from grant PIE201870E041; I.O.M. acknowledges funding from Spanish MINECO (and the European Regional Development Fund) project SYNBIOCONTROL (grant number DPI2017-82896-C2-2-R). C.V. has been partially funded by the spanish MINECO project MTM2016-76497-R and Xunta de Galicia grant ED431C2018/033
- Published
- 2019