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Moso bamboo (Phyllostachys edulis), a non-timber plant resource in China, possesses significant ecological and economic value. However, human activities and climate change have degraded its natural habitat, posing a significant threat to its widespread distribution. To address this, we used species distribution models based on 115 occurrence data and 10 ecological variables to predict the potential suitable areas and spatial change trends of moso bamboo in present and future periods in China. We also analyzed areas with environmental anomalies and the drivers of its geographical variations under climate change. The results showed that the biomod2 ensemble model, consisting of eleven integrated models, exhibited significantly improved accuracy compared to single models. Key environmental factors limiting its distribution were mean diurnal temperature range (bio2), minimum temperature of the coldest month (bio6), precipitation seasonality (bio15), and elevation. Currently, the potential suitable habitat covers 152.74 × 104 km2, mainly from south of the Qinling-Huaihe River to north of the Tropic of Cancer. However, under future climate scenarios, these habitats will considerably shrink, especially in highly suitable areas. The moderately suitable habitat will fragment, and the low-suitability boundary will move northward. With the deepening impact of climate change, the entire distribution range will move towards higher latitudes. Hunan, Guizhou, Zhejiang, and western Jiangxi emerge as future climate refuges for moso bamboo, necessitating critical population protection. In summary, our research deepens our insight of how climate change drives the geographic distribution of moso bamboo and offers valuable theoretical support for its cultivation and conservation. [ABSTRACT FROM AUTHOR]

Summary: Water plays crucial roles in expeditious growth and osmotic stress of bamboo. Nevertheless, the molecular mechanism of water transport remains unclear.In this study, an aquaporin gene, PeTIP4‐3, was identified through a joint analysis of root pressure and transcriptomic data in moso bamboo (Phyllostachys edulis). PeTIP4‐3 was highly expressed in shoots, especially in the vascular bundle sheath cells. Overexpression of PeTIP4‐3 could increase drought and salt tolerance in transgenic yeast and rice.A co‐expression pattern of PeSAPK4, PeMYB99 and PeTIP4‐3 was revealed by WGCNA. PeMYB99 exhibited an ability to independently bind to and activate PeTIP4‐3, which augmented tolerance to drought and salt stress. PeSAPK4 could interact with and phosphorylate PeMYB99 in vivo and in vitro, wherein they synergistically accelerated PeTIP4‐3 transcription. Overexpression of PeMYB99 and PeSAPK4 also conferred drought and salt tolerance in transgenic rice.Further ABA treatment analysis indicated that PeSAPK4 enhanced water transport in response to stress via ABA signaling. Collectively, an ABA‐mediated cascade of PeSAPK4‐PeMYB99‐PeTIP4‐3 is proposed, which governs water transport in moso bamboo. [ABSTRACT FROM AUTHOR]

Cyclin-dependent kinase (CDK), the pivotal controller of cell cycle progression, is involved in stress resistance and plant growth. Moso bamboo (Phyllostachys edulis) with surprisingly rapid growth depends on continuous cell division, but the CDK gene family information is still lacking. Here, we performed the systematic identification and analysis of the CDK genes in moso bamboo. 40 PeCDK genes were identified and divided into eight subgroups via phylogeny. The same subgroup possessed extremely conserved sequences and similar gene structure. In addition, evolutionary analysis suggested that the PeCDK gene family may have experienced extensive duplication events primarily 6.85–13.71 million years ago (MYA), with segmental duplication dominating. Furthermore, the multiple promoter cis-elements determined in PeCDK genes indicated their potential functions. The expression patterns revealed that most PeCDK genes participated in responses to drought, salt, ABA and SA signals, cell wall synthesis, organ developmental processes and callus growth. The insights gained provide beneficial reference for clarifying the functions of PeCDKs as well as exploring the growth mechanism in bamboo. [ABSTRACT FROM AUTHOR]

Stoichiometric homeostasis is an important mechanism in maintaining ecosystem structure, function, and stability. Phyllostachys edulis (moso bamboo) is a typical clone plant, forming pure bamboo forests or bamboo–wood mixed forests by expanding rhizomes around. Studying the stoichiometric homeostasis characteristics of moso bamboo at different ages after expansion contributes to a deeper understanding of the stability of bamboo forest ecosystems, and is of great significance for expanding the research scope of ecological stoichiometry. Based on the stoichiometric internal stability theory, the nitrogen (N) and phosphorus (P) elements in the soil and plants of typical moso bamboo forests in Tianbaoyan National Nature Reserve of Fujian Province were determined, and the internal stability index (H) of bamboo leaves of different ages (I-du, II-du, III-du, and IV-du bamboos) was calculated. The results showed that the dependence of moso bamboo on soil nutrients and the ability of moso bamboo to regulate nutrient elements were both significantly affected by the plant's age. Under the condition of the same soil nutrients (N, P), the content of N and P in bamboo leaves decreased significantly with the increase in bamboo age. The limiting effect of phosphorus on the growth and development of moso bamboo was greater than that of nitrogen, and the limiting effect of phosphorus on aged bamboo was greater than that of young bamboo. The stoichiometric internal stability index of N and P in bamboo leaves is HN:P > HN > HP, which means that the internal stability of moso bamboo is closely related to the limiting elements. Therefore, the regulation ability of the internal stability of moso bamboo of different ages makes it grow well in the changeable environment, has stronger adaptability and competitiveness, and the leaf internal stability of I-du bamboo was higher than that of other ages, which may be one of the reasons for its successful expansion to form a stable bamboo stand structure. [ABSTRACT FROM AUTHOR]

The rapid restoration and renewal of the moso bamboo logging zone after strip logging has emerged as a key research area, particularly regarding whether nutrient accumulation and utilization in reserve zones can aid in the restoration and regeneration of the logging zone. In this study, a dynamic 15N isotope tracking experiment was conducted by injecting labeled urea fertilizer into bamboo culms. Logging zones and reserve zones of 6 m, 8 m, and 10 m widths were established. The conventional selective logging treatment served as a control (Con). Measurements were taken in May and October to assess the differences in nitrogen accumulation ability, utilization rates, and nutrient content across different organs in bamboo forests at different growth stages and under different treatments. Principal component analysis was conducted to evaluate and determine the importance of each indicator and strip logging treatment comprehensively. The results showed that various bamboo organs exhibited higher nitrogen accumulation and utilization rates during the peak growth period compared to the late growth period. Leaves had the highest nitrogen accumulation and utilization rates than the other organs. The average C content in various bamboo organs under different logging treatments exhibited subtle differences, irrespective of variation in logging width treatments. Bamboo culm exhibited the highest carbon accumulation. The C content in various bamboo organs was higher during the peak growth period than in the late growth period. The nitrogen content peaked in the leaves during the two growth stages and was significantly higher compared to the other organs. Most bamboo organs in the logging zones exhibited relatively higher nitrogen content than in the reserve zone and Con group. The P content was highest in bamboo leaves compared with other organs across the different strip logging treatments. Principal component analysis revealed relatively high absolute values of the coefficients for the C content, bamboo stump C content, and culm Ndff%. Log8 and Res10 zones had the highest comprehensive evaluation scores, indicating that Log8 and Res10 had the best effect on the promotion of nitrogen utilization and nutrient accumulation in various organs of moso bamboo. [ABSTRACT FROM AUTHOR]

This study aimed to investigate the gradient properties of bamboo at the microscopic level and provide a basis for improving the utilization rate of bamboo. Using moso bamboo (Phyllostachys edulis (Carrière) J. Houz.) as a research subject, the variation of vascular bundle area percentage, chemical content, relative crystallinity (CR), mechanical properties of different bamboo slivers, and correlation between those parameters were analyzed. From the bamboo green layer (BGL) to the bamboo yellow layer (BYL), the distribution of vascular bundles changed from dense to sparse. Cellulose and lignin mass content decreased gently, and hemicellulose mass content showed gradual increases. The CR showed an order of bamboo middle layer (BML) > BGL > BYL. The tensile modulus of elasticity, tensile strength, bending modulus of elasticity, and bending strength decreased from BGL to BYL. The order of influence degree on mechanical properties of moso bamboo was vascular bundle area, hemicellulose content, lignin mass content, density, and CR, and these factors correlated with mechanical properties at a significant level (p < 0.05). Vascular bundle area had a decisive effect on the mechanical properties of bamboo. The vascular bundle area and density were linearly correlated with mechanical properties, while the lignin mass content and CR were curve-linearly correlated with mechanical properties. [ABSTRACT FROM AUTHOR]

Aims: To demonstrate how intensive management practices affect the belowground productivity of Moso bamboo, we examined the spatial distribution of fine root traits under three stands with high-intensity (T1, tillage plus biennial fertilization), low-intensity (T2, tillage plus quadrennial fertilization), and extensive (CK, no-tillage plus no fertilization) management, and evaluated the relationships among root traits and soil properties, aggregate stability (MWD). Methods: Bamboo fine root and soil samples were collected from three depths (0–10, 10–20, 20–30 cm) and three horizontal distances (20, 40, 60 cm) under three management strategies. Root biomass, root morphology, soil properties, and aggregate composition were determined. Results: Compared with CK, T1 and T2 had higher fine root biomass (FRB), and the largest FRB in the 10–20 cm soil layer. T1 had significantly higher allocation proportion of D1–2 class FRB and root length density (RLD) and significantly lower specific root length (SRL) and specific surface area (SSA). Vertically, intensive management led to an increase in FRB in the 10–20-cm soil layer and MWD in the 20–30-cm soil layer. Horizontally, FRB was highest at a distance of 20 cm from bamboo culm. A strong positive correlation was identified among FRB, RLD, and TP in each soil layer as well as among MWD, TP, and RLD. Conclusions: Intensive management promotes fine root growth with high length in response to more soil P content, and high-intensity management shifts the expression of root functional traits toward transport fine roots proportion and 10–20-cm soil layer, and facilitates aboveground productivity of Moso bamboo. TOC, TP, and RLD are the main three drivers correlated with soil aggregate stability. [ABSTRACT FROM AUTHOR]

Strip cutting has emerged as a new, efficient, and mechanized bamboo forest management model. To shorten the recovery period in strip cutting management, improve bamboo resource quality, prevent soil degradation, and achieve sustainable management, we selected on-year pure Moso bamboo (Phyllostachys edulis) forests for an 8-meter-wide strip cut. Three fertilization methods were applied in a complete two-factor experiment, including spreading, cave, and bamboo stump fertilization, at three fertilization dosages of 600, 900, and 1200 kg/ha (N:P:K = 3.5:1:2). We investigated the effects of different fertilization treatments on the biomass of new bamboo shoots and soil fertility to provide a reference for identifying the optimal fertilization scheme. The results showed that fertilization treatment increased the individual stand biomass of new Moso bamboo shoots, with a decreasing trend in the proportion of branches and leaves and an increasing proportion of culms in biomass allocation. Fertilization treatment significantly increased the total nitrogen, phosphorus, and potassium and available phosphorus contents in the soil. Overall, fertilization at 900 kg/ha using the spreading method showed the best results in promoting individual plant biomass recovery (5% increase in culm proportion and 4.12 kg increase in biomass per plant) and restoring soil fertility (increase the contents of TN, TP, TK, and AP in the entire soil layer) after strip cutting Moso bamboo forests, which addresses these pertinent issues in the strip cut management model. [ABSTRACT FROM AUTHOR]

SUMMARY: Dehydration response element binding (DREB) proteins are vital for plant abiotic stress responses, but the understanding of DREBs in bamboo, an important sustainable non‐timber forest product, is limited. Here we conducted a comprehensive genome‐wide analysis of the DREB gene family in Moso bamboo, representing the most important running bamboo species in Asia. In total, 44 PeDREBs were identified, and information on their gene structures, protein motifs, phylogenetic relationships, and stress‐related cis‐regulatory elements (CREs) was provided. Based on the bioinformatical analysis, we further analyzed PeDREBs from the A5 group and found that four of five PeDREB transcripts were induced by salt, drought, and cold stresses, and their proteins could bind to stress‐related CREs. Among these, PeDREB28 was selected as a promising candidate for further functional characterization. PeDREB28 is localized in nucleus, has transcriptional activation activity, and could bind to the DRE‐ and coupling element 1‐ (CE1) CREs. Overexpression of PeDREB28 in Arabidopsis and bamboo improved plant abiotic stress tolerance. Transcriptomic analysis showed that broad changes due to the overexpression of PeDREB28. Furthermore, 628 genes that may act as the direct PeDREB28 downstream genes were identified by combining DAP‐seq and RNA‐seq analysis. Moreover, we confirmed that PeDREB28 could bind to the promoter of pyrabactin‐resistance‐like gene (DlaPYL3), which is a homolog of abscisic acid receptor in Arabidopsis, and activates its expression. In summary, our study provides important insights into the DREB gene family in Moso bamboo, and contributes to their functional verification and genetic engineering applications in the future. [ABSTRACT FROM AUTHOR]

Zinc finger-homeodomain (ZF-HD) proteins play essential roles in plant growth, development and stress responses. However, knowledge of the expression and evolutionary history of ZF-HD genes in moso bamboo remains limited. In this study, a total of 24 ZF-HD genes were found unevenly distributed on 12 chromosomes in moso bamboo (Phyllostachys edulis). Phylogenetic analysis indicated that PeZF-HDs were divided into two subfamilies: ZHD and MIF. The ZHD subfamily genes were further classified into seven groups according to their orthologous relationships among the rice and Arabidopsis ZF-HD gene family. The gene structures and conserved motifs of PeZF-HDs were analyzed. Whole-genome duplication (WGD) or segmental duplication promoted the evolution and expansion of the moso bamboo ZF-HD gene family. Ka/Ks ratios suggested that the twenty-four duplication pairs had undergone purifying selection. Promoter analysis showed that most PeZF-HDs contained cis-elements associated with stress responses and hormones. Expression analysis demonstrated that many PeZF-HDs were responsive to abiotic stress treatment. Overall, this work investigated PeZF-HD genes in moso bamboo using bioinformatic approaches. The evolutionary research on gene structure, motif distribution and cis-regulatory elements indicated that PeZF-HDs play distinct roles in biological processes, which provides a theoretical basis for exploring the physiological functions of ZF-HDs and selecting candidate stress-related genes in moso bamboo. [ABSTRACT FROM AUTHOR]

Moso bamboo (Phyllostachys edulis) is one of the fastest growing plants. Gibberellin (GA) is a key phytohormone regulating growth, but there are few studies on the growth of Moso bamboo regulated by GA. The gibberellin 20 oxidase (GA20ox) gene family was targeted in this study. Chromosomal distribution and collinearity analysis identified 10 GA20ox genes evenly distributed on chromosomes, and the family genes were relatively conservative in evolution. The genetic relationship of GA20ox genes had been confirmed to be closest in different genera of plants in a phylogenetic and selective pressure analysis between Moso bamboo and rice. About 1/3 GA20ox genes experienced positive selective pressure with segmental duplication being the main driver of gene family expansion. Analysis of expression patterns revealed that only six PheGA20ox genes were expressed in different organs of shoot development and flowers, that there was redundancy in gene function. Underground organs were not the main site of GA synthesis in Moso bamboo, and floral organs are involved in the GA biosynthesis process. The auxin signaling factor PheARF47 was located upstream of PheGA20ox3 and PheGA20ox6 genes, where PheARF47 regulated PheGA20ox3 through cis-P box elements and cis-AuxRR elements, based on the result that promoter analysis combined with yeast one-hybrid and dual luciferase detection analysis identified. Overall, we identified the evolutionary pattern of PheGA20ox genes in Moso bamboo and the possible major synthesis sites of GA, screened for key genes in the crosstalk between auxin and GA, and laid the foundation for further exploration of the synergistic regulation of growth by GA and auxin in Moso bamboo. [ABSTRACT FROM AUTHOR]

The ATP-binding cassette subfamily B (ABCB) is an important transporter family, and many members are well known for their auxin transport function. However, reports on the function of the ABCB genes during Moso bamboo development are few. In this study, we identified and characterized 37 PhABCB genes in Moso bamboo and classified them into five subgroups, Ⅰ–Ⅴ. We further observed gene family expansion and gene loss events during the evolution of the PhABCB gene family. It was found that the expansion of the PhABCB family was mainly attributed to the whole-genome duplication and DNA-transposed duplication models. Gene co-expression analysis and quantitative real-time PCR revealed that several PhABCB genes may be involved in the development of the secondary cell wall (SCW) during the rapid growth of Moso bamboo. Through examining their expression in different parts of the bamboo internode where the cell walls exhibited different developmental stages, the roles of eight candidate PhABCBs in the SCW development were further characterized. Of the eight PhABCB genes, PhABCB7, PhABCB11, PhABCB14, and PhABCB21 may be involved in the SCW biogenesis in Moso bamboo. This study provides the basis for discovering the potential role of PhABCB genes in Moso bamboo cell wall development; further studies are needed to elucidate how these PhABCBs function in SCW development by regulating the polar transport of auxin. [ABSTRACT FROM AUTHOR]

Cadmium pollution in Moso bamboo forests poses a potential threat to the sustainable development of the bamboo industry. However, the effects of cadmium toxicity on Moso growth and its mechanisms of adaptation to cadmium stress are poorly understood. In this study, the physiological and transcriptional response of Moso to cadmium stress was investigated in detail using Moso seedlings in a hydroponic system. Cadmium toxicity severely inhibited the growth of roots but had little effect on biomass accumulation in the aerial parts. Cadmium accumulation in roots and aerial parts increased as external cadmium increased, with cadmium mainly localized in the epidermis and pericycle cells in the roots. The uptake and root-to-shoot translocation of cadmium was stimulated, but the photosynthetic process was suppressed under cadmium stress. A total of 3469 differentially expressed genes were identified from the transcriptome profile and those involved in cadmium uptake, transportation and detoxification were analyzed as candidates for having roles in adaptation to cadmium stress. The results suggested that Moso is highly efficient in cadmium uptake, xylem loading and translocation, as well as having a high capacity for cadmium accumulation. This work also provided basic information on physiological and transcriptional responses of Moso to cadmium toxicity. [ABSTRACT FROM AUTHOR]

• 22 JmjC (Jumonji C) genes were identified in moso bamboo. • The expressions of JmjC genes were strongly affected by ABA and MeJA treatment. • The majority of JmjC genes were highly expressed in shoot. PH02Gene32673.t1 was specifically expressed in inflorescences. Jumonji C (JmjC)-domain-containing proteins can demethylate histones in plants, and play a vital role in flowering and stress responses. The systematic analysis of JmjC genes was carried out in several species, but has not been reported in moso bamboo (Phyllostachys edulis). In this study, 22 putative JmjC genes were identified in moso bamboo, and were classified into four distinct subfamilies based on sequences similarity among Arabidopsis, rice and moso bamboo. Furthermore , an uneven distribution on chromosome and structure feature of JmjC genes were discovered. All JmjC genes in moso bamboo contain a typical JmjC domain, and some of them also have other important functional domains. Additionally, cis -acting elements related to hormone, abiotic stress and light were found in the promoter region of JmjC genes. Several JmjC genes were regulated under abscisic acid (ABA) and methyl jasmonate (MeJA) treatment. Organ expression profiles of JmjC genes displayed that most of them were highly expressed in shoot, suggesting their important functions in moso bamboo fast growth. Overall, our study provided valuable information for understanding the evolution of the moso bamboo JmjC gene family and will lay a foundation for future research on the function of the JmjC gene in moso bamboo. [ABSTRACT FROM AUTHOR]

【Objective】The study aimed to explore the remediation effect and physiological response of moso bamboo （Phyllostachys pubescens）to manganese(Mn) contaminated soil.【Method】The physiological response and heavy metal enrichment characteristics of moso bamboo were analyzed by measuring the botanical traits, photosynthetic parameters and chlorophyll fluorescence parameters of moso bamboo at different Mn stress concentrations （0, 1 000, 2 000 and 4 000 mg/ kg）in soil.【Result】Under 4 000 mg/kg Mn stress, the plant height, leaf length, leaf width and basal diameter of moso bamboo decreased by 22.6%, 25.9%, 21.3% and 26.7%, respectively, compared to the control, and the water utilization of moso bamboo leaves decreased significantly by 30.6 perccentage pints, the photochemical quenching index (qP) and nonchemical quenching index (qN) decreased by 29.8% and 20.7%, respectively. Furthermore, peroxidase （POD） activity and peroxidase （CAT） activity were reduced by 39.4% and 22.6%, respectively. Under Mn stressed soils supplemented with 0, 1 000, 2 000 and 4 000 mg/kg concentrations, the average above ground（stem and leaves）Mn enrichment of moso bamboo was 1 098.6, 2 336.4, 3 530.9 and 5 370.4 mg/kg, respectively, with Mn transfer coefficients of 1.59, 3.83, 3.56 and 4.17, respectively.【Conclusion】Mn stress at high concentrations has an inhibitory effect on the botanical traits of the moso bamboo, but the moso bamboo is still able to grow and has a good enrichment capacity for Mn stressed soils. It can be used as a new plant for manganese stressed soils. This study provides some reference value for future research in the field of heavy metal pollution control and phytoremediation. [ABSTRACT FROM AUTHOR]

As a natural biomass material, bamboo is subject to variations in culm size as well as in physical and mechanical properties that substantially influence processing and product quality. The diameter, thickness, and hardness of bamboo culms are critical factors for the output and quality of flattened bamboo board (FBB). In this study, the effects of different hardness modulus (HM) grades on the physical and mechanical properties of FBB were examined. The results showed that the HM of Moso bamboo (Phyllostachys pubescens) followed a normal distribution. Nine grades of HM could be divided by an interval of 5 KN/mm2. The physical and mechanical properties of FBB were positively correlated with the HM of bamboo culms. Compressive strength, tensile strength, and shear strength, as well as the bending properties of FBB, each increased with increasing HM. Furthermore, under the same conditions, the mechanical properties of FBB were superior to those of both bamboo strips and bamboo culms. The softening, flattening, and planing processes were beneficial in improving the performance of bamboo. The strong correlation between HM and the properties of FBB indicates that the HM grading of bamboo culms can be used in bamboo processing to produce high-quality FBB products with uniform performance. [ABSTRACT FROM AUTHOR]

The lack of mutants due to the long periods between flowering of bamboo plants is one of the limiting factors inhibiting research progress in the culm development of bamboo plants. In this study, a stable new dwarf variant of Phyllostachys edulis (Moso bamboo), Phyllostachys edulis f. exaurita T. G. Chen, was discovered and was characterized morphologically, anatomically, and physiologically. The height, diameter at breast height, number of internodes, length and wall thickness of internodes, length, width and number of parenchyma cells of internodes, and morphology of the wide-type (WT) and dwarf variant vascular bundles were compared. The height of the variant was only 49% that of the WT Moso bamboo. It was concluded that the decrease in internode number and length was the cause of dwarfism in P. edulis f. exaurita. The decreased internode length was the result of a decrease in cell number and cell length in the internode. In addition, the laws of change of internode length, internode thickness, cell length, and cell number differed between the WT Moso bamboo and the variant. Furthermore, lower IAA and zeatin concentrations were detected in the buds of the variant. These results suggest that P. edulis f. exaurita is a variant with inhibited primary thickening growth, which is valuable for interpretating the molecular mechanisms underlying the primary thickening growth of bamboo that are still largely unknown. [ABSTRACT FROM AUTHOR]

Basic helix–loop–helix (bHLH)/HLH transcription factors are involved in various aspects of the growth and development of plants. Here, we identified four HLH genes, PePRE1-4, in moso bamboo plants that are homologous to Arabidopsis PRE genes. In bamboo seedlings, PePRE1/3 were found to be highly expressed in the internode and lamina joint by using quantitative RT-PCR analysis. In the elongating internode of bamboo shoots, PePRE genes are expressed at higher levels in the basal segment than in the mature top segment. Overexpression of PePREs (PePREs-OX) in Arabidopsis showed longer petioles and hypocotyls, as well as earlier flowering. PePRE1 overexpression restored the phenotype due to the deficiency of AtPRE genes caused by artificial micro-RNA. PePRE1-OX plants showed hypersensitivity to propiconazole treatment compared with the wild type. In addition, PePRE1/3 but not PePRE2/4 proteins accumulated as punctate structures in the cytosol, which was disrupted by the vesicle recycling inhibitor brefeldin A (BFA). PePRE genes have a positive function in the internode elongation of moso bamboo shoots, and overexpression of PePREs genes promotes flowering and growth in Arabidopsis. Our findings provided new insights about the fast-growing mechanism of bamboo shoots and the application of PRE genes from bamboo. [ABSTRACT FROM AUTHOR]

Intercropping can result in changes in vegetation and soil properties, which could affect soil bacterial communities and functions that play critically important roles in the biogeochemical cycles in terrestrial ecosystems. Within the moso bamboo (Phyllostachys edulis)-based agroforestry systems, the bamboo-medicine model has received more and more attention regarding cultivation and ecology. The bamboo-medicine intercropping system is conducive to improving the utilization of bamboo forest land and space resources. However, the response mechanism of soil bacteria to changes in soil properties under the moso bamboo-rhizoma bletillae system is still unclear. In this experiment, a comparative study was conducted in three models including 4-year-old rhizoma bletillae (Bletilla striata) monoculture system (B4), 3- and 4-year moso bamboo-rhizoma bletillae intercropping systems (MB3 and MB4). The MB intercropping systems significantly reduced soil NO3−-N contents, and significantly altered soil microbial community structure with significant decrease of the relative abundance of Actinobacteria (the copiotrophic taxa) and increase of Chloroflexi (the oligotrophic taxa). The FAPROTAX database reflected that the functional group associated with C-cycling dominance decreased and N-cycling dominance increased during the transition from monoculture to intercropping system. The effect of intercropping on the soil microbial community structure was mainly due to the changes in soil moisture and NO3−-N. Our finding suggests that improvement of soil water and nitrogen regime can be effective measures for sustainable management of the bamboo-rhizoma bletillae intercropping system. [ABSTRACT FROM AUTHOR]

Moso bamboo is a rapidly growing species with significant economic, social, and cultural value. Transplanting moso bamboo container seedlings for afforestation has become a cost-effective method. The growth and development of the seedlings is greatly affected by the quality of light, including light morphogenesis, photosynthesis, and secondary metabolite production. Therefore, studies on the effects of specific light wavelengths on the physiology and proteome of moso bamboo seedlings are crucial. In this study, moso bamboo seedlings were germinated in darkness and then exposed to blue and red light conditions for 14 days. The effects of these light treatments on seedling growth and development were observed and compared through proteomics analysis. Results showed that moso bamboo has higher chlorophyll content and photosynthetic efficiency under blue light, while it displays longer internode and root length, more dry weight, and higher cellulose content under red light. Proteomics analysis reveals that these changes under red light are likely caused by the increased content of cellulase CSEA, specifically expressed cell wall synthetic proteins, and up-regulated auxin transporter ABCB19 in red light. Additionally, blue light is found to promote the expression of proteins constituting photosystem II, such as PsbP and PsbQ, more than red light. These findings provide new insights into the growth and development of moso bamboo seedlings regulated by different light qualities. [ABSTRACT FROM AUTHOR]

To obtain basic data for further use of bamboo culms and wood as ecofriendly bioenergy resources, the proximate analysis of Dendrocalamus giganteus, D. asper, Bambusa vulgaris, Gigantochloa apus, Phyllostachys pubescens, Pinus densiflora, and Quercus variabilis carbonized at 200 to 320 °C at 40 °C intervals was undertaken. Proximate analysis of moisture content, ash content, volatile matter, and fixed carbon content was performed according to JIS M 8812 (2004) with 60-mesh carbonized powder. Carbonized bamboo showed higher ash and volatile content than carbonized wood, whereas carbonized wood had a higher fixed carbon content than carbonized bamboo. At all temperatures, giant bamboo had the highest ash content. In bamboo and wood, the ash and fixed carbon contents increased with increasing carbonization temperature, whereas the volatile substances decreased. [ABSTRACT FROM AUTHOR]

Calcium-dependent protein kinases (CPKs) play an important role in plant regulation of growth and development, and in the responses to biotic and abiotic stresses. In the present study, we analyzed Moso bamboo (Phyllostachys edulis) CPK genes and their closely related five gene families (Brachypodium distachyon, Hordeum vulgare L., Oryza sativa, Setaria italica, and Zea mays) comprehensively, including phylogenetic relationships, gene structures, and synteny analysis. Thirty Moso bamboo CPKs were divided into four subgroups; in each subgroup, the constituent parts of gene structure were relatively conserved. Furthermore, analysis of expression profiles showed that most PheCPK genes are significantly upregulated under drought and cold stress, especially PheCPK1. Overexpression of PheCPK1 in Arabidopsis reduced plant tolerance to drought stress, as determined through physiological analyses of the relative water content, relative electrical leakage, and malondialdehyde content. It also activated the expressions of stress-related genes. In addition, overexpression of PheCPK1 in Arabidopsis exhibited significantly decreased reactive oxygen species (ROS)–scavenging ability. Taken together, these results suggest that PheCPK1 may act as a negative regulator involved in the drought stress responses. [ABSTRACT FROM AUTHOR]

Plant AT-rich sequence and zinc-binding (PLATZ) proteins play indispensable roles in regulating plant growth and development. The family genes have been reported in multiple species, while systematic research about the family in moso bamboo has not been carried out yet. Here, a total of 90 PLATZ genes were collected and identified in moso bamboo and four other gramineous plants and they were divided into five subfamilies. Subsequently, we analyzed the gene structures and conserved motifs of these genes and found the exon/intron distribution patterns of members from the same subfamilies were similar. The result of the non-synonymous/synonymous ratios of paralogous and orthologous during evolution suggested that the PLATZ family underwent strong purification selection. The expression pattern analysis of PhePLATZ genes using publicly available transcriptome data exhibited that the expression level of some PhePLATZs was significantly up-regulated after Gibberellins (GA) treatment and Naphthaleneacetic acid (NAA) treatment. More importantly, the majority of members in group I and a member in group II had strong response to dehydration and cold stress treatment. According to co-expression network and quantitative real-time reverse transcription PCR (qRT-PCR) analysis, we further screened out several key PLATZ proteins that may perform significant functions in responding to abiotic stress. Additionally, subcellular localization experiments showed that six selected PhePLATZs were nuclear localized. Our results provide us with a better insight into the evolution of PLATZ genes and offer guidance for systematic analysis and further functional study of PLATZ genes in moso bamboo. [ABSTRACT FROM AUTHOR]

Drop weight impact tester was used to accurately measure the bending impact resistance of various parts of Phyllostachys edulis, commonly known as moso bamboo, with a growth cycle of 3-8 years. Cellulose crystallinity in the bottom (B), middle (M) and top (T) of bamboo at different ages was calculated using peak height analysis in X-ray diffraction. Heatmap of Spearman correlation analysis was used to represent the correlation between chemical composition and impact mechanics. The breaking load (BL), fracture energy (FE) and impact deflection (ID) of 3-8-yearold bamboo were found to be in the range of ~670-2120 N, ~5.17-15.55 J, and ~3.60-~17.76 mm, respectively. As the growth period of bamboo rises, the cellulose crystallinity at the B and T decreases first and then increases, while that for the M increases first and then remains stable. Similarly, the bending impact performance of bamboo was found to become stable with its growth and age. The flexural impact and toughness of the 4-year-old bamboo base material were better than other specimens. The enhancement in the bending impact properties of bamboo at different growth periods was influenced by the lignin content, while the value of FE was mainly positively correlated with ash, cold and hot water extracts and benzyl alcohol content. However the content of holocellulose and pentosan, air-dry density and, base density negatively influenced the FE. With the change in the height of the bamboo, the correlation between its impact mechanical properties and chemical composition gradually decreased. This study provides data support and theoretical basis for the age-appropriate thinning and application of moso bamboo. [ABSTRACT FROM AUTHOR]

Silicon (Si) has crucial effects on plant development and stress resistance. Silicon transporters regulate Si absorption, transport, and distribution in plants. In this study, we identified and characterized the Si transporter gene family of moso bamboo (Phyllostachys edulis) and cloned seven putative Si transporter genes. Moso bamboo Si transporters contain conserved functional domains that mediate the accumulation of considerable amounts of Si. The analysis of gene duplication patterns and divergence times suggested that the expansion of the moso bamboo Si transporter family was mainly due to segmental duplications. The expression of moso bamboo Si transporter genes, which varied among organs, was significantly modulated by Si treatments. The subcellular localization analysis showed that Si transporters are plasma membrane proteins. The Si content increased in transgenic Arabidopsis overexpressing PeLsi1-1 or PeLsi1-2 , which affected vegetative and reproductive growth. Our single-particle tracking analysis revealed the four diffusion modes of PeLsi1-1 on the plasma membrane. Moreover, the particle velocity, dwell time, and motion range of PeLsi1-1 decreased in response to Si treatments. The results of this study will further clarify the molecular mechanisms underlying Si absorption and accumulation in bamboo plants. • Moso bamboo has the molecular basis of high silicon accumulation. • The excessive accumulation of silicon affected the growth of transgenic Arabidopsis. • The distribution and dynamic changes of PeLsi1-1 were affected by silicon. • A hypothetical model for silicon transport in moso bamboo seedlings was established. [ABSTRACT FROM AUTHOR]

Improved knowledge of nutrient removals from harvesting is essential for the sustainable management of Moso bamboo forests. In particular, the growth and development of bamboo forests are considered to meet the increasing demand for biomass energy. In this study, plots with an 8 m width strip cut (SC) after five years of restoration were selected as the research object and the traditional management forest (CK) as the control. The nutrient content and biomass of Moso bamboo at different ages were studied and the nutrient storage was calculated. The results showed that five years after cutting, the soil nutrient content in different soil layers and the aboveground nutrient storage reached the same level as the CK. The nutrient ranking of each organ of Moso bamboo was nitrogen > potassium > phosphorus. The phosphorus content of bamboo culm in CK was significantly higher than that in SC at different ages (p < 0.05). The biomass accumulation of each organ of Moso bamboo was culm > branch > leaf. In addition, the relationship between nutrient storage and DBH and density in SC is a simple power form, and the coefficient of determination of most computational models is above 0.9. Our results demonstrated that strip cutting is more economical than traditional management, but nutrient addition is needed to improve the quality of new bamboo trees at the initial stage of recovery in consideration of long-term productivity maintenance. [ABSTRACT FROM AUTHOR]

INDETERMINATE DOMAIN (IDD) proteins, a family of transcription factors unique to plants, function in multiple developmental processes. Although the IDD gene family has been identified in many plants, little is known about it in moso bamboo. In this present study, we identified 32 PheIDD family genes in moso bamboo and randomly sequenced the full-length open reading frames (ORFs) of ten PheIDDs. All PheIDDs shared a highly conserved IDD domain that contained two canonical C2H2-ZFs, two C2HC-ZFs, and a nuclear localization signal. Collinearity analysis showed that segmental duplication events played an important role in expansion of the PheIDD gene family. Synteny analysis indicated that 30 PheIDD genes were orthologous to those of rice (Oryza sativa). Thirty PheIDDs were expressed at low levels, and most PheIDDs exhibited characteristic organ-specific expression patterns. Despite their diverse expression patterns in response to exogenous plant hormones, 8 and 22 PheIDDs responded rapidly to IAA and 6-BA treatments, respectively. The expression levels of 23 PheIDDs were closely related to the outgrowth of aboveground branches and 20 PheIDDs were closely related to the awakening of underground dormant buds. In addition, we found that the PheIDD21 gene generated two products by alternative splicing. Both isoforms interacted with PheDELLA and PheSCL3. Furthermore, both isoforms could bind to the cis-elements of three genes (PH02Gene17121, PH02Gene35441, PH02Gene11386). Taken together, our work provides valuable information for studying the molecular breeding mechanism of lateral organ development in moso bamboo. [ABSTRACT FROM AUTHOR]

The expansion of Moso bamboo (Phyllostachys edulis (Carriere) J. Houzeau) has triggered native forest retreat and a range of ecological issues, especially for the Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.) forests with similar growing conditions. In order to reveal the stoichiometric characteristics of Moso bamboo succession and scientifically control the forest retreat caused by the expansion of Moso bamboo into Chinese fir, mixed forests including 0%, 30%, 50%, 60%, and 80% of Moso bamboo expanded into Chinese fir forests were used to simulate the expansion stages I, II, III, IV, and V, respectively. In addition, by measuring the C, N, and P contents in Moso bamboo leaves and soils and calculating the correlation stoichiometric ratios, the correlation and coupling of which were explored and combined with an ecological homeostasis model at different stages of Moso bamboo expansion. The results demonstrated that P was a key element for the high utilization of Moso bamboo growth, and the expansion principle was influenced by N limitation. The conclusion was that the anthropogenic regulation of C content in soil could achieve the purpose of expansion control and exploit the carbon sequestration capacity in the mixed forest with half Moso bamboo and half Chinese fir, which should discourage the expansion. [ABSTRACT FROM AUTHOR]

Understanding fine root characteristics in relation to soil properties of bamboo–broadleaf mixed forests may help optimize belowground production management and ecological functions in mixed-forest ecosystems. In this study, we compared four different bamboo–broadleaf mixed forests: Castanopsis chinensis (Sprengel) Hance with moso bamboo (CCB), Alniphyllum fortunei (Hemsl.) Makino with moso bamboo (AFB), Choerospondias axillaris (Roxb.) Burtt and Hill with moso bamboo (CAB), and Castanopsis fargesii Franch with moso bamboo (CFB), and analyzed their effects on the traits of fine roots of moso bamboo, soil nutrient contents, and enzyme activities. In January 2022, fine root and soil samples from four different mixed bamboo–broadleaf forests were collected from a subtropical region of Fujian Province, China. Results showed that CAB significantly increased fine root biomass (FRB) and root length density (RLD); however, specific root length (SRL) was only in the 0–20 cm soil layer. Specific surface area (SSA) was significantly reduced in the CCB in the 0–20 cm and 20–40 cm soil layers. The total phosphorous (TP) and total potassium (TK) contents of AFB and CAB were significantly increased (p < 0.05), and the alkali-hydrolyzable nitrogen (AN) content was significantly increased by CCB in the 0–20 cm soil layer (p < 0.05). Additionally, CFB increased the activities of acid phosphatase (ACP) and catalase (CAT) but decreased the activity of sucrase (SC). Principal component analysis showed that fine root traits (FRB, RLD, SRL, and SSA) were not only positively associated with soil organic carbon (SOC), total nitrogen (TN) and available potassium (AK) but also associated with urease (UE) and CAT. Therefore, belowground interactions between different species have a significant impact on the characteristics of fine roots and soil in bamboo–broadleaf mixed forests. [ABSTRACT FROM AUTHOR]

G2-like (GLK) transcription factors contribute significantly and extensively in regulating chloroplast growth and development in plants. This study investigated the genome-wide identification, phylogenetic relationships, conserved motifs, promoter cis-elements, MCScanX, divergence times, and expression profile analysis of PeGLK genes in moso bamboo (Phyllostachys edulis). Overall, 78 putative PeGLKs (PeGLK1–PeGLK78) were identified and divided into 13 distinct subfamilies. Each subfamily contains members displaying similar gene structure and motif composition. By synteny analysis, 42 orthologous pairs and highly conserved microsynteny between regions of GLK genes across moso bamboo and maize were found. Furthermore, an analysis of the divergence times indicated that PeGLK genes had a duplication event around 15 million years ago (MYA) and a divergence happened around 38 MYA between PeGLK and ZmGLK. Tissue-specific expression analysis showed that PeGLK genes presented distinct expression profiles in various tissues, and many members were highly expressed in leaves. Additionally, several PeGLKs were significantly up-regulated under cold stress, osmotic stress, and MeJA and GA treatment, implying that they have a likelihood of affecting abiotic stress and phytohormone responses in plants. The results of this study provide a comprehensive understanding of the moso bamboo GLK gene family, as well as elucidating the potential functional characterization of PeGLK genes. [ABSTRACT FROM AUTHOR]

Drought is one of the most serious environmental stresses. Plant AT-rich sequence and zinc-binding (PLATZ) proteins perform indispensable functions to regulate plant growth and development and to respond to environmental stress. In this present study, we identified PhePLATZ1 in moso bamboo and found that its expression was up-regulated in response to 20% PEG-6000 and abscisic acid (ABA) treatments. Next, transgenic PhePLATZ1 -overexpressing Arabidopsis lines were generated. Overexpression of PhePLATZ1 improved drought stress resistance of transgenic plants by mediating osmotic regulation, enhancing water retention capacity and reducing membrane and oxidative damage. These findings were corroborated by analysing physiological indicators including chlorophyll, relative water content, leaf water loss rate, electrolyte leakage, H 2 O 2 , proline, malondialdehyde content and the enzyme activities of peroxidase and catalase. Subsequent seed germination and seedling root length experiments that included exposure to exogenous ABA treatments showed that ABA sensitivity decreased in transgenic plants relative to wild-type plants. Moreover, transgenic PhePLATZ1 -overexpressing plants promoted stomatal closure in response to ABA treatment, suggesting that PhePLATZ1 might play a positive regulatory role in the drought resistance of plants via the ABA signaling pathway. In addition, the transgenic PhePLATZ1 -OE plants showed altered expression of some stress-related genes when grown under drought conditions. Taken together, these findings improve our understanding of the drought response of moso bamboo and provide a key candidate gene for the molecular breeding of this species for drought tolerance. • The expression level of PhePLATZ1 in moso bamboo was induced by drought and ABA. • Overexpression of PhePLATZ1 improved drought stress tolerance of Arabidopsis. • Transgenic Arabidopsis showed the decreased ABA-sensitivity during seed germination and early seedling growth. • Transgenic Arabidopsis promoted stomatal closure in response to ABA treatment. • PhePLATZ1 regulated the expression of several stress-related genes under drought stress. [ABSTRACT FROM AUTHOR]

Resource sharing among connected ramets (i.e. clonal integration) is one of the distinct traits of clonal plants. Clonal integration confers Moso bamboo (Phyllostachys pubescens) a strong adaptability to different environmental conditions. But the mechanisms of how clonal integration makes Moso bamboo has better performance are still poorly understood. In this study, acropetal and basipetal translocation of photosynthates between Moso bamboo ramets were analyzed separately to investigate how clonal fragments obtain higher benefits under heterogeneous N conditions. Clonal fragments of Moso bamboo consisting of two interconnected mother–daughter ramets were used, each of the ramets was subjected to either with or without N addition. The acropetal and basipetal translocation of 13C-photosynthates was separated via single-ramet 13CO2-labeling. Mother ramets translocated more 13C-photosynthates to daughter ramets with N addition, and the translocation of 13C-photosynthates to mother ramets was more pronounced when daughter ramets were treated with N addition. The 13C-photosynthates that were translocated from mother ramets without and with N addition were mainly invested in the leaves and roots of daughter ramets with N addition, from daughter ramets with N addition were mainly invested in the leaves and roots of mother ramets with and without N addition, respectively. These results suggest that mother ramets preferentially invest more resources in nutrient-rich daughter ramets, and that daughter ramets serve as efficient resource acquisition sites to specialize in acquiring abundant resources based on the resource conditions of mother ramets. Clonal plants can improve their resource acquisition efficiency and maximize the overall performance in this way. [ABSTRACT FROM AUTHOR]

Summary: Bamboo has a natural anisotropic porous structure. Previous studies have shown strong correlations between the properties and microstructure of bamboo. In this study, we examined the microstructure of Moso bamboo to reveal the mechanism of enhanced properties with tung oil thermal treatment. The morphological and chemical microstructure of Moso bamboo were characterized using scanning electron microscopy (SEM) and Raman spectroscopy. We found that tung oil film presented in the cell wall, cell lumen, and intercellular space after tung oil thermal treatment, which could decrease the water permeability in the cell wall. Additionally, the pits in vessels showed significant shrinkage in the short-axis orientation with thermal treatment in tung oil, and the shrinkage rate was nearly 50% with a temperature of tung oil over 140°C, which prevented the transportation of water through the pit. The content of tung oil in bamboo was reduced by more than 50% with an increase of tung oil temperature from 140°C to 200°C, which further supported the results of changed bamboo morphology. Altogether, these findings offer further support for the enhanced hydrophobic property of bamboo after tung oil thermal treatment. [ABSTRACT FROM AUTHOR]

Moso bamboo, recognized for its wide distribution and economic importance, encounters challenges in varietal enhancement owing to its protracted sexual reproduction cycle. This study employed whole-genome resequencing to identify spontaneous mutations in Moso bamboo and investigated mutagenesis using atmospheric and room temperature plasma (ARTP). Through the sequencing results, we identified a population of flowering bamboo as an asexual breeding line. Notably, the flowering Moso bamboo population, exclusively derived from asexual reproduction, exhibited a high spontaneous mutation rate (4.54 × 10−4 to 1.15 × 10−3/bp) during sexual reproduction, considering parental and cross-pollination effects. Genetic disparities between the offspring and parents exhibited a bimodal distribution, indicating a substantial cross-pollination rate. ARTP mutagenesis increased structural variations in offspring, whereas changes in SNPs and INDELs were less pronounced. Sanger sequencing validated the gene subset, providing a foundation for the investigation of spontaneous mutation rates via whole-genome sequencing. These insights, particularly from mutagenized offspring sequencing, can contribute to Moso bamboo breeding strategies. • Identified flowering Moso bamboo as a clonal lineage. • Revealed high spontaneous mutation rate in sexual reproduction of Moso bamboo. • Predicted high cross-pollination rates in Moso bamboo. • ARTP mutagenesis enhances structural variations in Moso bamboo offspring. [ABSTRACT FROM AUTHOR]

The two-component system (TCS) regulates plant growth and stress responses by affecting phytohormone signalling; however, its role in Moso bamboo (Phyllostachys edulis) is poorly understood. Here, we identified 87 Moso bamboo TCS genes (PheTCS s), including 24 that encode PheHKs (histidine kinases), 10 that encode PheHPts (histidine phosphotransfer proteins) and 53 that encode PheRRs (response regulators). The PheTCS s and their corresponding proteins were comprehensively analysed using bioinformatics: this covered their gene structure, conserved motifs, phylogenetic tree, cis-acting elements on promoters, collinearity analysis and transcriptome data. Within 24 h of subjecting Moso bamboo to salt and drought stress, the expression of PheRRB8 increased from 1.2-fold to 6.1-fold and from 8.1-fold to 31.9-fold, respectively. Subcellular localisation and transcriptional activity experiments demonstrated that PheRRB8 localised to the nucleus and cytoplasm and exhibited transactivation activity in yeast. Furthermore, in silico protein interaction predictions indicated that PheRRB8 may interact with most PheHPts. A weighted correlation network analysis centred on PheRRB8 revealed 500 co-expressed genes, which were mostly annotated as 'response to stimulus' in the Gene Ontology database and were enriched in the 'metabolism' pathway in the Kyoto Encyclopedia of Genes and Genomes database. Subsequently, PheRRB8 was overexpressed in Arabidopsis thaliana for functional studies. The phenotype and physiological indexes of PheRRB8 -overexpressing transgenic A. thaliana plants under stress treatment showed that PheRRB8 weakened A. thaliana 's tolerance to salt stress. Our results present the Moso bamboo TCS family more comprehensively to researchers and contribute to the understanding of Moso bamboo's responses to abiotic stresses. [Display omitted] • A total of 87 TCSs were identified in Moso bamboo. • PheRRB8 was screened by bioinformatics analysis and Real-Time PCR experiments. • PheRRB8 localise to the nucleus and cytoplasm, and have transactivation activity in yeast. • PheRRB8 may play a key role in phytohormone signal transduction and environmental stress response. • Overexpression of PheRRB8 weakened Arabidopsis thaliana tolerance to salt stress. [ABSTRACT FROM AUTHOR]

Background: Orphan gene play an important role in the environmental stresses of many species and their identification is a critical step to understand biological functions. Moso bamboo has high ecological, economic and cultural value. Studies have shown that the growth of moso bamboo is influenced by various stresses. Several traditional methods are time-consuming and inefficient. Hence, the development of efficient and high-accuracy computational methods for predicting orphan genes is of great significance. Results: In this paper, we propose a novel deep learning model (CNN + Transformer) for identifying orphan genes in moso bamboo. It uses a convolutional neural network in combination with a transformer neural network to capture k-mer amino acids and features between k-mer amino acids in protein sequences. The experimental results show that the average balance accuracy value of CNN + Transformer on moso bamboo dataset can reach 0.875, and the average Matthews Correlation Coefficient (MCC) value can reach 0.471. For the same testing set, the Balance Accuracy (BA), Geometric Mean (GM), Bookmaker Informedness (BM), and MCC values of the recurrent neural network, long short-term memory, gated recurrent unit, and transformer models are all lower than those of CNN + Transformer, which indicated that the model has the extensive ability for OG identification in moso bamboo. Conclusions: CNN + Transformer model is feasible and obtains the credible predictive results. It may also provide valuable references for other related research. As our knowledge, this is the first model to adopt the deep learning techniques for identifying orphan genes in plants. [ABSTRACT FROM AUTHOR]

Auxin plays a crucial regulatory role in higher plants, but systematic studies on the location of auxin local biosynthesis are rare in bamboo and other graminaceous plants. We studied moso bamboo (Phyllostachys edulis), which can grow up to 1 m/day and serves as a reference species for bamboo and other fast-growing species. We selected young tissues such as root tips, shoot tips, young culm sheaths, sheath blades, and internode divisions for local auxin biosynthesis site analysis. IAA immunofluorescence localization revealed that auxin was similarly distributed in different stages of 50-cm and 300-cm bamboo shoots. Shoot tips had the highest auxin content, and it may be the main site of auxin biosynthesis in the early stage of rapid growth. A total of 22 key genes in the YUCCA family for auxin biosynthesis were identified by genome-wide identification, and these had obvious tissue-specific and spatio-temporal expression patterns. In situ hybridization analysis revealed that the localization of YUCCA genes was highly consistent with the distribution of auxin. Six major auxin synthesis genes, PheYUC3-1 , PheYUC6-1 , Phe YUC6-3 , PheYUC9-1 , PheYUC9-2 , and PheYUC7-3 , were obtained that may have regulatory roles in auxin accumulation during moso bamboo growth. Culm sheaths were found to serve as the main local sites of auxin biosynthesis and the auxin required for internode elongation may be achieved mainly by auxin transport. [ABSTRACT FROM AUTHOR]

Accurate estimations of leaf biomass are required to quantify the amount of material and energy exchanged between vegetation and the atmosphere, to enhance the primary productivity of forest stands, and to assess the contributions of vegetation towards the mitigation of global climate change. The leaf biomass of Moso bamboo (Phyllostachys edulis (Carrière) J. Houz) changes dramatically during the year owing to changes in the leaves and the growth of new shoots. Furthermore, the relationship between the leaf biomass of Moso bamboo under cutting the top of the culm and the diameter at breast height (D) and culm height is decoupling, which increases the difficulty of estimating leaf biomass. Consequently, an effective method to accurately estimate the leaf biomass of Moso bamboo under cutting the top of the culm is required. In this study, leaf biomass and other factors (age, D, culm height, crown length, and crown width) were measured for 54 bamboo samples collected from December 2019 to December 2020. Models for predicting the leaf biomass of the Moso bamboo were established using multiple linear regression with two strategies, and their accuracies were evaluated using leave-one-out cross-validation. The results showed that crown length, crown width, and age were highly correlated with leaf biomass, and these were important factors when making estimations. Variation in monthly averaged leaf biomass is significant, with a decreasing trend from January to May and an increasing trend from June to December in off-years. The leaf biomass model that utilized data from the three leaf change periods had a better fit and accuracy, with R2 values of 0.583–0.848 and prediction errors between 8.59% and 24.19%. The model that utilized data for all months had a worse fit and accuracy, with an R2 value of 0.228 and prediction error of 46.79%. The results of this study provide reference data and technical support to help clarify the dynamic changes in Moso bamboo leaf biomass, and therefore, aid in the development of accurate simulations. [ABSTRACT FROM AUTHOR]

The TALE gene family is a subfamily of the homeobox gene family and has been implicated in regulating plant secondary growth. However, reports about the evolutionary history and function of the TALE gene family in bamboo are limited. Here, the homeobox gene families of moso bamboo Olyra latifolia and Bonia amplexicaulis were identified and compared. Many duplication events and obvious expansions were found in the TALE family of woody bamboo. PhTALEs were found to have high syntenies with TALE genes in rice. Through gene co-expression analysis and quantitative real-time PCR analysis, the candidate PhTALEs were thought to be involved in regulating secondary cell wall development of moso bamboo during the fast-growing stage. Among these candidate PhTALEs, orthologs of OsKNAT7, OSH15, and SH5 in moso bamboo may regulate xylan synthesis by regulating the expression of IRX-like genes. These results suggested that PhTALEs may participate in the secondary cell wall deposition in internodes during the fast-growing stage of moso bamboo. The expansion of the TALE gene family may be implicated in the increased lignification of woody bamboo when divergent from herbaceous bamboos. [ABSTRACT FROM AUTHOR]

The secondary cell wall of bamboo parenchyma cells is microfibril-based. However, understanding of the microfibril orientation of secondary cell walls in bamboo parenchyma cells is lacking. This study characterized the microfibril orientation of the sub-layers of the secondary cell wall in the parenchyma cells by field-emission environmental scanning electron microscopy and the microfibril angle of the ground parenchyma cell wall with X-ray diffraction. The microfibril orientation of tight-loose alternating layers of the secondary cell wall was in the opposite direction along the longitudinal axis. Near the parenchyma cells' pit aperture, the microfibril orientation generally bypassed the pits and continued in a flow-like pattern. The mean microfibril angle of ground parenchyma cells was 63.3°. The average microfibril angle of adjacent sub-layers of the secondary cell wall was 60° and − 65° in ground parenchyma cells, and 54° and − 52° in vascular parenchyma cells. A structure model of microfibril orientation of parenchyma cell wall in moso bamboo was firstly constructed. The study provides insight into the anatomical structure of the parenchyma cell wall in the bamboo plant. Moreover, it provides a structural basis for further analysis of the mechanical properties of parenchyma cells. [ABSTRACT FROM AUTHOR]

Summary: Ground parenchyma cells play a crucial role in the growth and the mechanical properties of bamboo plants. Investigation of the morphology of ground parenchyma cells is essential for understanding the physiological functions and mechanical properties of these cells. This study aimed to characterize the anatomical structure of bamboo ground parenchyma cells and provide a qualitative and quantitative basis for the more effective utilization of bamboo. To do this, the morphology of ground parenchyma cells in Moso bamboo (Phyllostachys edulis) was studied using light microscopy and field-emission environmental scanning electron microscopy. Results show that various geometric shapes of ground parenchyma cells were observed, including nearly circular, square, long, oval, and irregular shapes. Cell walls of both long and short parenchyma cells exhibited primary wall thickening and secondary wall thickening, resulting in a primary pit field and simple pits. Most long cells were strip-shaped (L / W = 2.52), while most short cells were short and wide (L / W = 0.59). The proportion of long cells was 11 times greater than that of short cells. Most long cells were filled with starch grains, and some short cells also occasionally had starch grains. These findings allowed the first construction of the three-dimensional structure of parenchyma cells. [ABSTRACT FROM AUTHOR]

With-no-lysine (WNK) kinases play vital roles in abiotic stress response, circadian rhythms, and regulation of flowering time in rice, Arabidopsis, and Glycine max. However, there are no previous reports of WNKs in the Bambusoideae, although genome sequences are available for diploid, tetraploid, and hexaploid bamboo species. In the present study, we identified 41 WNK genes in five bamboo species and analysed gene evolution, phylogenetic relationship, physical and chemical properties, cis-elements, and conserved motifs. We predicted the structure of PeWNK proteins of moso bamboo and determined the exposed, buried, structural and functional amino acids. Real-time qPCR analysis revealed that PeWNK5, PeWNK7, PeWNK8, and PeWNK11 genes are involved in circadian rhythms. Analysis of gene expression of different organs at different developmental stages revealed that PeWNK genes are tissue-specific. Analysis of various abiotic stress transcriptome data (drought, salt, SA, and ABA) revealed significant gene expression levels in all PeWNKs except PeWNK11. In particular, PeWNK8 and PeWNK9 were significantly down- and up-regulated, respectively, after abiotic stress treatment. A co-expression network of PeWNK genes also showed that PeWNK2, PeWNK4, PeWNK7, and PeWNK8 were co-expressed with transcriptional regulators related to abiotic stress. In conclusion, our study identified the PeWNKs of moso bamboo involved in circadian rhythms and abiotic stress response. In addition, this study serves as a guide for future functional genomic studies of the WNK genes of the Bambusoideae. [ABSTRACT FROM AUTHOR]

Background: LTR retrotransposons play a significant role in plant growth, genome evolution, and environmental stress response, but their regulatory response to heat stress remains unclear. We have investigated the activities of two LTR retrotransposons, PHRE1 and PHRE2, of moso bamboo (Phyllostachys edulis) in response to heat stress. Results: The differential overexpression of PHRE1 and PHRE2 with or without CaMV35s promoter showed enhanced expression under heat stress in transgenic plants. The transcriptional activity studies showed an increase in transposition activity and copy number among moso bamboo wild type and Arabidopsis transgenic plants under heat stress. Comparison of promoter activity in transgenic plants indicated that 5'LTR promoter activity was higher than CaMV35s promoter. Additionally, yeast one-hybrid (Y1H) system and in planta biomolecular fluorescence complementation (BiFC) assay revealed interactions of heat-dependent transcription factors (TFs) with 5'LTR sequence and direct interactions of TFs with pol and gag. Conclusions: Our results conclude that the 5'LTR acts as a promoter and could regulate the LTR retrotransposons in moso bamboo under heat stress. [ABSTRACT FROM AUTHOR]

Background: The BBX (B-box) family are zinc finger protein (ZFP) transcription factors that play an essential role in plant growth, development and response to abiotic stresses. Although BBX genes have been characterized in many model organisms, genome-wide identification of the BBX family genes have not yet been reported in Moso bamboo (Phyllostachys edulis), and the biological functions of this family remain unknown. Result: In the present study, we identified 27 BBX genes in the genome of Moso bamboo, and analysis of their conserved motifs and multiple sequence alignments revealed that they all shared highly similar structures. Additionally, phylogenetic and homology analyses indicated that PeBBX genes were divided into three clusters, with whole-genome duplication (WGD) events having facilitated the expansion of this gene family. Light-responsive and stress-related cis-elements were identified by analyzing cis-elements in the promoters of all PeBBX genes. Short time-series expression miner (STEM) analysis revealed that the PeBBX genes had spatiotemporal-specific expression patterns and were likely involved in the growth and development of bamboo shoots. We further explored the downstream target genes of PeBBXs, and GO/KEGG enrichment analysis predicted multiple functions of BBX target genes, including those encoding enzymes involved in plant photosynthesis, pyruvate metabolism and glycolysis/gluconeogenesis. Conclusions: In conclusion, we analyzed the PeBBX genes at multiple different levels, which will contribute to further studies of the BBX family and provide valuable information for the functional validation of this family. [ABSTRACT FROM AUTHOR]

In the current study, the impact of silicon nanoparticles on germination characteristics and key growth parameters was investigated in Moso bamboo seedlings under cadmium (Cd) stress. The seeds were germinated at a concentration of 100 µM Cd alone and in combination with two levels of SiO2 NPs (100 and 200 µM), and the results were compared with those from a control treatment. The results indicated that SiO2 NPs significantly improved germination characteristics (GP, GR, and GI) under Cd toxicity but also led to increased mean germination time (MGT). On the other hand, the results indicated that the seedling growth indexes, seedling biomass and vigor indexes of Moso bamboo improved under a combination of 100 µM Cd and silicon nanoparticles. We concluded that SiO2 NPs could ameliorate cadmium toxicity during seed germination and that the enhanced germination parameters improved seedling growth in Moso bamboo under Cd toxicity. We also found that SiO2 NPs at 200 µM rather than 100 µM had a greater beneficial impact on the seed germination and the seedling growth under the Cd stress of 100 µM. Thus, the use of SiO2 NPs may help in controlling Cd toxicity at the stages of seed germination and seedling growth in Moso bamboo (Phyllostachys edulis). [ABSTRACT FROM AUTHOR]

Plant monovalent cation/proton antiporters (CPAs), types of transmembrane transporters, play important roles in resistance to salt stress. In this study, 37 CPA genes from moso bamboo (Phyllostachys edulis) were identified and characterised. The expression profiles of 10 CPA1 genes (PheNHX s) of moso bamboo were detected by qRT-PCR, which showed that they were specifically expressed in six tissues. In addition, the expression of 10 PheNHX s in leaves and roots changed significantly under 150/200 mM NaCl and 100 μM ABA treatments. In particular, the expression of PheNHX2 in leaves and roots was significantly upregulated under NaCl treatment, thus, we cloned PheNHX2 and analysed its function. Subcellular localisation analysis showed that PheNHX2 was located on the vacuolar membrane. Overexpression of PheNHX2 reduced seed germination and root growth of Arabidopsis thaliana under salt stress, as well as severely affecting cellular Na+ and K+ content, which in turn reduced the salt tolerance of transgenic Arabidopsis. Measurements of physiological indicators, including chlorophyll content, malondialdehyde content, peroxidase and catalase enzyme activities and relative electrical conductivity, all supported this conclusion. Under salt stress, PheNHX2 also inhibited the expression of some stress-related and ion transport-related genes in transgenic Arabidopsis. Overall, these results indicate that overexpression of PheNHX2 reduces the salt tolerance of transgenic Arabidopsis. This investigation establishes a foundation for subsequent functional studies of moso bamboo CPA genes, and it provides a deeper understanding of PheNHX2 regulation in relation to the salt tolerance of moso bamboo. • 37 CPA genes of Phyllostachys edulis were firstly identified in our research. • 10 CPA1 genes of Phyllostachys edulis were closely associated with salt stress. • Overexpression of PheNHX2 significantly reduced the salt stress tolerance of transgenic Arabidopsis thaliana. [ABSTRACT FROM AUTHOR]

Background: Moso bamboo, the fastest growing plant on earth, is an important source for income in large areas of Asia, mainly cultivated in China. Lateral organ boundaries domain (LBD) proteins, a family of transcription factors unique to plants, are involved in multiple transcriptional regulatory pathways and play important roles in lateral organ development, pathogen response, secondary growth, and hormone response. The LBD gene family has not previously been characterized in moso bamboo (Phyllostachys edulis). Results: In this study, we identified 55 members of the LBD gene family from moso bamboo and found that they were distributed non-uniformly across its 18 chromosomes. Phylogenetic analysis showed that the moso bamboo LBD genes could be divided into two classes. LBDs from the same class share relatively conserved gene structures and sequences encoding similar amino acids. A large number of hormone response–associated cis-regulatory elements were identified in the LBD upstream promoter sequences. Synteny analysis indicated that LBDs in the moso bamboo genome showed greater collinearity with those of O. sativa (rice) and Zea mays (maize) than with those of Arabidopsis and Capsicum annuum (pepper). Numerous segmental duplicates were found in the moso bamboo LBD gene family. Gene expression profiles in four tissues showed that the LBD genes had different spatial expression patterns. qRT–PCR assays with the Short Time-series Expression Miner (STEM) temporal expression analysis demonstrated that six genes (PeLBD20, PeLBD29, PeLBD46, PeLBD10, PeLBD38, and PeLBD06) were consistently up-regulated during the rapid growth and development of bamboo shoots. In addition, 248 candidate target genes that function in a variety of pathways were identified based on consensus LBD binding motifs. Conclusions: In the current study, we identified 55 members of the moso bamboo transcription factor LBD and characterized for the first time. Based on the short-time sequence expression software and RNA-seq data, the PeLBD gene expression was analyzed. We also investigated the functional annotation of all PeLBDs, including PPI network, GO, and KEGG enrichment based on String database. These results provide a theoretical basis and candidate genes for studying the molecular breeding mechanism of rapid growth of moso bamboo. [ABSTRACT FROM AUTHOR]

Background: Aspartic proteases (APs) are a class of aspartic peptidases belonging to nine proteolytic enzyme families whose members are widely distributed in biological organisms. APs play essential functions during plant development and environmental adaptation. However, there are few reports about APs in fast-growing moso bamboo. Result: In this study, we identified a total of 129 AP proteins (PhAPs) encoded by the moso bamboo genome. Phylogenetic and gene structure analyses showed that these 129 PhAPs could be divided into three categories (categories A, B and C). The PhAP gene family in moso bamboo may have undergone gene expansion, especially the members of categories A and B, although homologs of some members in category C have been lost. The chromosomal location of PhAPs suggested that segmental and tandem duplication events were critical for PhAP gene expansion. Promoter analysis revealed that PhAPs in moso bamboo may be involved in plant development and responses to environmental stress. Furthermore, PhAPs showed tissue-specific expression patterns and may play important roles in rapid growth, including programmed cell death, cell division and elongation, by integrating environmental signals such as light and gibberellin signals. Conclusion: Comprehensive analysis of the AP gene family in moso bamboo suggests that PhAPs have experienced gene expansion that is distinct from that in rice and may play an important role in moso bamboo organ development and rapid growth. Our results provide a direction and lay a foundation for further analysis of plant AP genes to clarify their function during rapid growth. [ABSTRACT FROM AUTHOR]

Phyllostachys edulis (Carr.) H. de Lehaie f. tubiformis (S.Y.Wang) Ohrnberger (shengyin bamboo in Chinese) is a dwarf form of moso bamboo, which has important ornamental value. In this study, the complete chloroplast genome of P. edulis f. tubiformis was reported. The complete chloroplast genome of P. edulis f. tubiformis is a double-circular DNA of 139,678 bp in length with 38.89% G + C content, and contains 126 genes, including 84 protein-coding genes, eight ribosomal RNA (rRNA) genes, and 34 transfer RNA (tRNA) genes. Phylogenetic analysis results strongly supported that P. edulis f. tubiformis was clustered with the other infra-species of P. edulis, although its morphology is quite different from moso bamboo. [ABSTRACT FROM AUTHOR]

Sustainable goals for contemporary world seek viable solutions for interconnected challenges, particularly in the fields of food and energy security and climate change. We present bamboo, one of the versatile plant species on earth, as an ideal candidate for bioeconomy for meeting some of these challenges. With its potential realized, particularly in the industrial sector, countries such as China are going extensive with bamboo development and cultivation to support a myriad of industrial uses. These include timber, fiber, biofuel, paper, food, and medicinal industries. Bamboo is an ecologically viable choice, having better adaptation to wider environments than do other grasses, and can help to restore degraded lands and mitigate climate change. Bamboo, as a crop species, has not become amenable to genetic improvement, due to its long breeding cycle, perennial nature, and monocarpic behavior. One of the commonly used species, moso bamboo (Phyllostachys edulis) is a potential candidate that qualifies as industrial bamboo. With its whole‐genome information released, genetic manipulations of moso bamboo offer tremendous potential to meet the industrial expectations either in quality or in quantity. Further, bamboo cultivation can expect several natural hindrances through biotic and abiotic stresses, which needs viable solutions such as genetic resistance. Taking a pragmatic view of these future requirements, we have compiled the present status of bamboo physiology, genetics, genomics, and biotechnology, particularly of moso bamboo, to drive various implications in meeting industrial and cultivation requirements. We also discuss challenges underway, caveats, and contextual opportunities concerning sustainable development. [ABSTRACT FROM AUTHOR]