4,646 results
Search Results
2. Creation of Categorical Mandible Atlas to Benefit Non-Rigid Registration
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Borgard, Heather, Abdi, Amir H., Prisman, Eitan, Fels, Sidney, Tavares, João Manuel R. S., Series Editor, Jorge, Renato Natal, Series Editor, Ateshian, Gerard A., editor, and Myers, Kristin M., editor
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- 2020
- Full Text
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3. Supplementary materials for paper: Perdiz arrow points from Caddo burial contexts aid in defining discrete behavioral regions
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Selden, Robert
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NAGPRA ,archeology ,Caddo ,morphometrics ,American Southeast ,lithic ,archaeology ,stone tools ,practice theory ,geometric morphometrics ,2D - Abstract
Recent research into Caddo bottle and biface morphology yielded evidence for two distinct behavioral regions, across which material culture from Caddo burials expresses significant morphological differences. This study asks whether Perdiz arrow points from Caddo burials differ across the same geography, which would extend the pattern of morphological differences to a third category of Caddo material culture. Perdiz arrow points collected from the geographies of the northern and southern Caddo behavioral regions were employed to test the hypothesis that morphological attributes differ, and are predictable, between the two communities. The analysis of linear metrics indicated a significant difference in morphology by behavioral region. Using the linear metrics combined with the tools of machine learning, a predictive model---support vector machine---was designed to assess the degree to which community differences could be predicted, achieving a receiver operator curve score of 97 percent, and an accuracy score of 94 percent. The subsequent landmark geometric morphometric analysis identified significant differences in Perdiz arrow point shape and size between the behavioral regions---one characterized by a comparatively smaller blade and larger stem (north), and the other by a comparatively larger blade and smaller stem (south)---coupled with significant results for modularity and morphological integration. These findings build directly upon recent investigations that posited two discrete Caddo behavioral regions defined on the basis of discernible morphological differences, which is expanded here to include a third category of Caddo material culture.
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- 2023
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4. A new species of the paper wasp genus Polistes (Hymenoptera, Vespidae, Polistinae) in Europe revealed by morphometrics and molecular analyses.
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Neumeyer, Rainer, Baur, Hannes, Guex, Gaston-Denis, and Praz, Christophe
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PAPER wasps , *MORPHOMETRICS , *CYTOCHROME oxidase , *GENETIC barcoding , *MULTIVARIATE analysis , *PRINCIPAL components analysis - Abstract
We combine multivariate ratio analysis (MRA) of body measurements and analyses of mitochondrial and nuclear data to examine the status of several species of European paper wasps (Polistes Latreille, 1802) closely related to P. gallicus. Our analyses unambiguously reveal the presence of a cryptic species in Europe, as two distinct species can be recognized in what has hitherto been considered Polistes bischoffi Weyrauch, 1937. One species is almost as light coloured as P. gallicus, and is mainly recorded from Southern Europe and Western Asia. The other species is darker and has a more northern distribution in Central Europe. Both species occur syntopically in Switzerland. Given that the lost lectotype of P. bischoffi originated from Sardinia, we selected a female of the southern species as a neotype. The northern species is described as P. helveticus sp. n. here. We also provide a redescription of P. bischoffi rev. stat. and an identification key including three more closely related species, P. biglumis, P. gallicus and P. hellenicus. [ABSTRACT FROM AUTHOR]
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- 2014
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5. The people behind the papers - Toby Andrews and Elia Benito-Gutierrez.
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NOTOCHORD , *POSTDOCTORAL researchers , *AMPHIOXUS , *MORPHOMETRICS , *MORPHOLOGY - Abstract
A fundamental question of developmental biology is how the coordinated action of various cells gives rise to distinct tissue morphologies that are reproducible across members of the same species. A new paper in Development now addresses this question by performing single-cell morphometrics to study notochord formation in amphioxus. To hear more about the story, we chatted to first author and postdoctoral researcher Toby Andrews, and his PhD supervisor Elia Benito-Gutie'rrez, Group Leader in the Department of Zoology at the University of Cambridge. [ABSTRACT FROM AUTHOR]
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- 2021
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6. EVALUATING THE INFLUENCE OF CRANIOTOMY ON CORTICAL THICKNESS IN TRAUMATIC BRAIN INJURY USING MAGNETIC RESONANCE IMAGING (short paper).
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Kotetishvili, Ketevan V., Iordanishvili, Elene K., and Mikiashvili, Sopho ZH.
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CRANIOTOMY , *BRAIN injuries , *MAGNETIC resonance imaging , *PYRAMIDAL neurons , *MORPHOMETRICS - Abstract
While craniotomy is one of the management methods for traumatic brain injury (TBI), there is still controversy about the quality of life and the improved outcome is questioned after this procedure. Present article attempts to evaluate the structural changes of grey matter between the traumatic brain injury patients with and without craniotomy. Utilizing magnetic resonance data and performing voxel-based morphometry, revealed the lower cortical thickness in TBI patients with craniotomy compared to their non-craniotomy counterparts. [ABSTRACT FROM AUTHOR]
- Published
- 2018
7. Response paper: Morphometric article by Mejía et al. 2015 alluding genera Herichthys and Nosferatu displays serious inconsistencies
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Mauricio De la Maza-Benignos, Ma. de Lourdes Lozano-Vilano, and María Elena García-Ramírez
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Morphometrics ,Paraphyly ,Systematics ,Geometric morphometrics ,biology ,Ecology ,Biogeography ,Cox 1 ,Monophyly requirement ,Aquatic Science ,biology.organism_classification ,Genera ,Taxon ,Genus ,Evolutionary biology ,Paraphyletic ,lcsh:Zoology ,Species concepts ,Herichthys ,Animal Science and Zoology ,Taxonomy (biology) ,lcsh:QL1-991 ,Ecology, Evolution, Behavior and Systematics - Abstract
In the present response paper, the article entitled "Morphometric variation of the Herichthys bartoni (Bean, 1892) species group (Teleostei: Cichlidae): How many species comprise H. labridens (Pellegrin, 1903)?" by Mejía et al . 2015 is critically reviewed. The current review pinpoints some of the more conspicuous conceptual inconsistencies and fundamental errors found in the study by Mejía et al . (2015), It is contended that the authors fail to provide any new insights into the complex biogeography and evolutionary history of the Nosferatu and Herichthys genus groups, and that while results of their Cox1 molecular analysis are comparable to those by De la Maza-Benignos et al . (2015), the conclusions of the two studies are not comparable. In addition, it is contested that, whereas the designation of genus Nosferatu by De la Maza-Benignos et al . (2015) was found on the principles of the biological and phylogenetic species concepts, the rejection of the genus by Mejía et al . (2015) is solely based "on the presence of (overlapping) morphometric characters" between genera. The assumption by Mejía et al . (2015),that because their geometric morphometrics analysis failed to provide separation of species, then Nosferatu genus does not correspond to a valid taxon; and their suggesting geometric morphometrics "as useful tool to discriminate species, because it allows to propose diagnostic characters" were not supported by their results. While Mejía et al . present some interesting thoughts on the systematics of Nosferatu , they unfortunately fail to provide any data that can be objectively assessed as relevant to motivate any changes in the current taxonomy. RESUMEN El presente documento de respuesta analiza críticamente el artículo titulado "Morphometric variation of the Herichthys bartoni (Bean, 1892) species group (Teleostei: Cichlidae): How many species comprise H. labridens (Pellegrin, 1903)?" por Mejía et al. (2015), así como también evidencia algunas de las contradicciones conceptuales y errores fundamentales encontrados en dicho documento. Se arguye que el artículo no proporciona ningún aspecto nuevo acerca de la compleja biogeografía, ni de la historia evolutiva de los géneros Nosferatu y Herichthys , y que mientras que los resultados del análisis molecular utilizando el gen Cox1 son similares a los de la Maza-Benignos et al. (2015), las conclusiones de ambos estudios no son compatibles. Se contiende además que mientras que la designación del género Nosferatu por De la Maza-Benignos et al. (2015) se fundamentó en principios asociados a los conceptos biológico y filogenético de especie, el rechazo del género por Mejía et al. ,(2015) únicamente se basa "en la existencia de caracteres morfométricos (superpuestos)" entre géneros. La inferencia por parte de Mejía et al . de que debido a que el análisis de morfometría geométrica no logró separar a las especies, y que por lo tanto el género Nosferatu no corresponde a un taxón válido; así como la observación de que la morfometría geométrica corresponde a "una herramienta útil para diferenciar especies, porque permite proponer caracteres de diagnóstico" no están sustentadas por los resultados de su análisis, y mientras que Mejía et al. ,presentan algunas ideas interesantes sobre la sistemática de Nosferatu , lamentablemente no proporcionan ningún dato relevante que pueda ser evaluado objetivamente como para motivar cambios en la taxonomía actual.
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- 2015
8. Introduction to the special issue on 'Advances in Biomedical Engineering and Computing: the MEDICON Conference Case' selected papers from MEDICON 2010
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Bamidis, Panagiotis D., Bliznakova, K., Pallikarakis, N., Pattichis, Constantinos S., and Pattichis, Constantinos S. [0000-0003-1271-8151]
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Graphic Processor Unit ,Engineering ,editorial ,data analysis ,brain radiography ,capsule endoscopy ,Biomedical Engineering ,Health Informatics ,information processing ,Computing Methodologies ,biomedical engineering ,transcranial magnetic stimulation ,Animals ,Humans ,human ,subthalamic nucleus ,morphometrics ,business.industry ,electrode ,Computer Science Applications ,computer analysis ,Engineering ethics ,nerve cell ,brain depth stimulation ,business ,signal transduction ,Software - Abstract
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- 2012
9. Short paper, Morphometric study of the cerebrum and cerebellum in Indian Gray Mongoose (Herpestes edwardsii).
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Rasouli, Babak, Gholami, Soghra, and Kamali, Younes
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CEREBELLUM ,MONGOOSES ,CARNIVOROUS animals ,BODY weight ,MORPHOMETRICS - Abstract
Mongoose is a common name for 30 species of the family Herpestidae found in a vast area of southwestern Asia, especially Iran. Morphometric studies of the brain have been topics of interest to anatomy researchers due to their high importance in veterinary and zoology fields. The present study was conducted to better understand the brain's morphometric features in Mongoose because of the lack of information about the brain structure in wild carnivores. For this purpose, eight carcasses of adult mongooses were used. They were found in different Fars province areas in Iran, which were dead due to natural causes. The brain was then carefully separated from the skull, and all the measurements and observations related to different parts of the brain were recorded. The values entered the computer separated by gender, and SPSS 22 and T. student tests were used for statistical analysis while the significance level of P ≤ 0.05 was considered. This study showed that the ratio of brain weight to body weight (EQ) and the ratio of cerebellum weight to total brain weight in mongoose are higher than other carnivores. All the brain's morphometric findings in mongooses are in unparalleled harmony with their lifestyle. Also, no difference was found between the mongoose and other carnivores such as dogs and cats regarding the gyri and sulci's number and pattern. The current work is a preliminary assessment, and new imaging methods are suggested for more advanced studies. [ABSTRACT FROM AUTHOR]
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- 2021
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10. Geometric morphometric study of populations of the social wasp, Polistes dominulus (Christ, 1791) from Zanjan province, north-west Iran.
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ABBASI, ROOHOLLAH, MASHHADIKHAN, MAEDEH, ABBASI, MEHDI, and KIABI, BAHRAM
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PAPER wasps , *INSECT populations , *GEOMETRY , *MULTIVARIATE analysis , *MORPHOMETRICS , *VALLEYS - Abstract
We analysed morphological variation among 17 forewing characters within five populations of the paper wasp, Polistes dominulus, in Iran. The raw planar coordinate data were aligned using geometric and mathematical calculations in kendall's shape space. After transfer of the data to a linear euclidean space, i.e., tangent space, multivariate analysis of 135 images of forewings were made using their geometric morphometric characters (30 in the forewings). We observed a direct correlation between morphological characters and the geographically easiest travel distance along river valleys and mountain ranges. [ABSTRACT FROM AUTHOR]
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- 2009
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11. Testing the morphotype-based classification of two leaf shapes in Ecclinusa guianensis (Sapotaceae) from Central Amazonia
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de Carvalho, Tatiana Cristina Rotta, da Cruz Vasconcelos, Caroline, and Terra-Araujo, Mário Henrique
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- 2024
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12. Zonal anatomy of the prostate using magnetic resonance imaging, morphometrics, and radiomic features: impact of age-related changes
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Olivier Cussenot, Morgan Rouprêt, Raphaele Renard Penna, Eric de Kerviler, Sarah Montagne, Sophie Laschkar, and Olivier Lucidarme
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Adult ,Male ,Entropy ,Prostate ,Age related ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Aged ,Retrospective Studies ,Morphometrics ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Age Factors ,Magnetic resonance imaging ,Mean age ,General Medicine ,Anatomy ,Middle Aged ,Prostate-Specific Antigen ,Innovations in prostate cancer special feature : Full Paper ,medicine.anatomical_structure ,Diffusion Magnetic Resonance Imaging ,business - Abstract
Objective: To evaluate the impact of age on the zonal anatomy of the prostate by MRI using morphometric and textural analysis. Methods: A total of 154 men (mean age: 63 years) who underwent MRI due to a high prostate-specific antigen (PSA) level were included retrospectively. At each MRI examination the following variables were measured: overall dimensions of the prostate (whole gland (WG), transitional zone (TZ), and peripheral zone (PZ)), and thickness of the anterior fibromuscular stroma (AFMS) and the periprostatic venous plexus (PPVP) on T2 weighted images. Identical regions of interest (ROIs) were delineated on the apparent diffusion coefficient (ADC) map on the anterior (horn) and posterior part of the PZ. Textural (TexRAD®) parameter differences between TZ and PZ ROIs on T2 weighted images were analyzed by linear regression. Results were correlated with age (distributed into five decades from 22 to 89 years). Results: Age was positively correlated with PSA level and glandular volumes (WG, TZ, and TZ/WG ratio; p < 0.0001) and was negatively correlated with AFSM and PPVP thickness (p < 0.0001). There was a positive correlation between ADC values of the PZ and age (p = 0.003) and between entropy of the TZ and PZ and age (p < 0.001). Conclusion: Gradual variations in morphologic and textural features of the prostate were observed with age, mainly due to the increase in TZ volume while PZ volume tended to decrease. These modifications resulted in textural changes mainly at the expense of entropy. Advances in knowledge: Entropy could be relevant for studying the process of aging of the prostate.
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- 2023
13. Multi-level feature fusion network for neuronal morphology classification.
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Sun, Chunli and Zhao, Feng
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FEATURE extraction ,NEURAL circuitry ,MORPHOMETRICS ,MORPHOLOGY ,NEURONS - Abstract
Neuronal morphology can be represented using various feature representations, such as hand-crafted morphometrics and deep features. These features are complementary to each other, contributing to improving performance. However, existing classification methods only utilize a single feature representation or simply concatenate different features without fully considering their complementarity. Therefore, their performance is limited and can be further improved. In this paper, we propose a multi-level feature fusion network that fully utilizes diverse feature representations and their complementarity to effectively describe neuronal morphology and improve performance. Specifically, we devise a Multi-Level Fusion Module (MLFM) and incorporate it into each feature extraction block. It can facilitate the interaction between different features and achieve effective feature fusion at multiple levels. The MLFM comprises a channel attention-based Feature Enhancement Module (FEM) and a cross-attention-based Feature Interaction Module (FIM). The FEM is used to enhance robust morphological feature presentations, while the FIM mines and propagates complementary information across different feature presentations. In this way, our feature fusion network ultimately yields a more distinctive neuronal morphology descriptor that can effectively characterize neurons than any singular morphological representation. Experimental results show that our method effectively depicts neuronal morphology and correctly classifies 10-type neurons on the NeuronMorpho-10 dataset with an accuracy of 95.18%, outperforming other approaches. Moreover, our method performs well on the NeuronMorpho-12 and NeuronMorpho-17 datasets and possesses good generalization. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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14. Growth trajectories of prenatal embryos of the deep‐sea shark <scp> Chlamydoselachus anguineus </scp> (Chondrichthyes)
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Sho Tanaka, Faviel A. López-Romero, Claudia Klimpfinger, and Jürgen Kriwet
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Male ,0106 biological sciences ,Embryo, Nonmammalian ,frilled shark ,Ontogeny ,Embryonic Development ,Zoology ,Aquatic Science ,010603 evolutionary biology ,01 natural sciences ,Deep sea ,Total Body Length ,Regular Paper ,Animals ,jaw development ,geometric morphometrics ,development ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Morphometrics ,Sex Characteristics ,biology ,010604 marine biology & hydrobiology ,Regular Papers ,biology.organism_classification ,Chondrichthyes ,Sexual dimorphism ,ontogeny ,Sharks ,Chlamydoselachus anguineus ,Female ,Allometry ,Ovoviviparity - Abstract
Chlamydoselachus anguineus, Garman 1884, commonly called the frilled shark, is a deep‐sea shark species occurring up to depths of 1300 m. It is assumed to represent an ancient morphotype of sharks (e.g., terminal mouth opening, more than five gill slits) and thus is often considered to represent plesiomorphic traits for sharks. Therefore, its early ontogenetic developmental traits are important for understanding the evolution of its particular phenotype. Here, we established six stages for prenatal embryos and used linear measurements and geometric morphometrics to analyse changes in shape and size as well as their timing during different embryonic stages. Our results show a change in head shape and a relocation of the mouth opening at a late stage of development. We also detected a negative allometric growth of the head and especially the eye compared to the rest of the body and a sexual dimorphism in total body length, which differs from the known data for adults. A multivariate analysis of covariance shows a significant interaction of shape related to the logarithm of centroid size and developmental stage. Geometric morphometrics results indicate that the head shape changes as a covariate of body size while not accounting for differences between sexes. The growth pattern of stages 32 and 33 indicates a shift in head shape, thus highlighting the moment in development when the jaws start to elongate anteriorly to finally achieve the adult condition of terminal mouth opening rather than retaining the early embryonic subterminal position as is typical for sharks. Thus, the antero‐terminal mouth opening of the frilled shark has to be considered a derived feature.
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- 2020
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15. Cranial shape variation in mink: separating two highly similar species
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Brandon M. Kilbourne, Eloy Gálvez-López, and Philip G. Cox
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Male ,Histology ,Zoology ,Bite Force ,Neovison ,cranium ,shape variation ,biology.animal ,medicine ,Animals ,Humans ,Mink ,American mink ,geometric morphometrics ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,European mink ,Morphometrics ,Original Paper ,Sex Characteristics ,biology ,Skull ,Mustela lutreola ,Cell Biology ,biology.organism_classification ,Original Papers ,Sexual dimorphism ,medicine.anatomical_structure ,Neurocranium ,sexual dimorphism ,Female ,Allometry ,Anatomy ,Head ,Developmental Biology - Abstract
European and American minks (Mustela lutreola and Neovison vison, respectively) are very similar in their ecology, behavior, and morphology. However, the American mink is a generalist predator and seems to adapt better to anthropized environments, allowing it to outcompete the European mink in areas where it has been introduced, threatening the survival of the native species. To assess whether morphological differences may be contributing to the success of the American mink relative to the European mink, we analyzed shape variation in the cranium of both species using 3D geometric morphometrics. A set of 38 landmarks and 107 semilandmarks was used to study shape variation between and within species, and to assess how differences in size factored into that variation. Sexual dimorphism in both size and shape was also studied. Significant differences between species were found in cranial shape, but not in size. Relative to American mink, European mink have a shorter facial region with a rounder forehead and wider orbits, a longer neurocranium with less developed crests and processes, and an antero‐medially placed tympanic bullae with an anteriorly expanded cranial border. Within species, size‐related sexual dimorphism is highly significant, but sexual dimorphism in shape is only significant in American mink, not in European mink. Additionally, two trends common to both species were discovered, one related to allometric changes and another to sexual size dimorphism. Shape changes related to increasing size can be subdivided into two, probably related, groups: increased muscle force and growth. The first group somewhat parallels the differences between both mink species, while the second group of traits includes an anterodorsal expansion of the face, and the neurocranium shifting from a globous shape in small individuals to a dorsoventrally flattened ellipse in the largest ones. Finally, the sexual dimorphism trend, while also accounting for differences in muscle force, seems to be related to the observed dietary differences between males and females. Overall, differences between species and sexes, and shape changes with increasing size, seem to mainly relate to differences in masticatory‐muscle volume and therefore muscle force and bite force, which, in turn, relate to a wider range of potential prey (bigger prey, tougher shells). Thus, muscle force (and dietary range) would be larger in American mink than in European mink, in males than in females, and in larger individuals than in smaller ones., Cranial shape and size variation in European (Mlu) and American minks (Nvi) were studied. Both species differed in shape but not size, while sexes within each differed in size but in shape only for Nvi. Allometric shape changes were related to growth and sexual dimorphism. Overall, differences among species, sexes, and sizes related to masticatory‐muscle volume, which suggests that muscle force (and dietary range) would be larger in Nvi than in Mlu, in males than in females, and in larger mink.
- Published
- 2022
16. Cheliceral chelal design in free-living astigmatid mites
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Bowman, CE
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0106 biological sciences ,Ecomorphology ,Mechanical advantage ,Zoology ,Generalist and specialist species ,010603 evolutionary biology ,01 natural sciences ,Size ,Animals ,Body Size ,Pyroglyphid ,Durophagy ,Arthropods ,Ordination ,Acaridae ,Morphometrics ,Mites ,Review Paper ,Geometric morphometrics ,Actinotrichida ,Ecology ,biology ,Feeding ,Shape ,Individualised divergences ,General Medicine ,biology.organism_classification ,Arthropod mouthparts ,010602 entomology ,Animal ecology ,Insect Science - Abstract
Cheliceral chelal design in free-living astigmatid mites (Arthropoda: Acari) is reviewed within a mechanical model. Trophic access (body size and cheliceral reach) and food morsel handling (chelal gape and estimated static adductive crushing force) are morphologically investigated. Forty-seven commonly occurring astigmatid mite species from 20 genera (covering the Acaridae, Aeroglyphidae, Carpoglyphidae, Chortoglyphidae, Glycyphagidae, Lardoglyphidae, Pyroglyphidae, Suidasiidae, and Winterschmidtiidae) are categorised into functional groups using heuristics. Conclusions are confirmed with statistical tests and multivariate morphometrics. Despite these saprophagous acarines in general being simple ‘shrunken/swollen’ versions of each other, clear statistical correlations in the specifics of their mechanical design (cheliceral and chelal scale and general shape) with the type of habitat and food consumed (their ‘biome’) are found. Using multivariate analyses, macro- and microsaprophagous subtypes are delineated. Relative ratios of sizes on their own are not highly informative of adaptive syndromes. Sympatric resource competition is examined. Evidence for a maximum doubling of approximate body volume within nominal taxa is detected but larger mites are not more ‘generalist’ feeding types. Two contrasting types of basic ‘Bauplan’ are found differing in general scale: (i) a large, chunk-crunching, ‘demolition’-feeding omnivore design (comprising 10 macrosaprophagous astigmatid species), and (ii) a small selective picking, squashing/slicing or fragmentary/‘plankton’ feeding design (which may indicate obligate fungivory/microbivory) comprising 20 microsaprophagous acarid-shaped species. Seventeen other species appear to be specialists. Eleven of these are either: small (interstitial/burrowing) omnivores—or a derived form designed for processing large hard food morsels (debris durophagy, typified by the pyroglyphid Dermatophagoides farinae), or a specialist sub-type of particular surface gleaning/scraping fragmentary feeding. Six possible other minor specialist gleaning/scraping fragmentary feeders types each comprising one to two species are described. Details of these astigmatid trophic-processing functional groups need field validation and more corroborative comparative enzymology. Chelal velocity ratio in itself is not highly predictive of habitat but with cheliceral aspect ratio (or chelal adductive force) is indicative of life-style. Herbivores and pest species are typified by a predicted large chelal adductive force. Pest species may be ‘shredders’ derived from protein-seeking necrophages. Carpoglyphus lactis typifies a mite with tweezer-like chelae of very feeble adductive force. It is suggested that possible zoophagy (hypocarnivory) is associated with low chelal adductive force together with a small or large gape depending upon the size of the nematode being consumed. Kuzinia laevis typifies an oophagous durophage. Functional form is correlated with taxonomic position within the Astigmata—pyroglyphids and glycyphagids being distinct from acarids. A synthesis with mesostigmatid and oribatid feeding types is offered together with clarification of terminologies. The chelal lyrifissure in the daintiest chelicerae of these astigmatids is located similar to where the action of the chelal moveable digit folds the cheliceral shaft in uropodoids, suggesting mechanical similarities of function. Acarid astigmatids are trophically structured like microphytophagous/fragmentary feeding oribatids. Some larger astigmatids (Aleuroglyphus ovatus, Kuzinia laevis, Tyroborus lini) approximate, and Neosuidasia sp. matches, the design of macrophytophagous oribatids. Most astigmatid species reviewed appear to be positioned with other oribatid secondary decomposers. Only Dermatophagoides microceras might be a primary decomposer approximating a lichenivorous oribatid (Austrachipteria sp.) in trophic form. Astigmatid differences are consilient with the morphological trend from micro- to macrophytophagy in oribatids. The key competency in these actinotrichid mites is a type of ‘gnathosomisation’ through increased chelal and cheliceral height (i.e., a shape change that adjusts the chelal input effort arm and input adductive force) unrestricted by the dorsal constraint of a mesostigmatid-like gnathotectum. A predictive nomogram for ecologists to use on field samples is included. Future work is proposed in detail.
- Published
- 2021
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17. Reassessing the Interpretative Potential of Ethnographic Collections for Early Hunting Technologies
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Milks, Annemieke, Hoggard, Christian, and Pope, Matt
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- 2024
- Full Text
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18. Phylogeny and foraging behaviour shape modular morphological variation in bat humeri
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Laura A. B. Wilson, Vuong Tan Tu, Suzanne J. Hand, Daisuke Koyabu, and Camilo López-Aguirre
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0301 basic medicine ,Histology ,Appendicular skeleton ,Foraging ,Postcrania ,Tetrapod ,03 medical and health sciences ,0302 clinical medicine ,Phylogenetics ,Chiroptera ,medicine ,Animals ,Wings, Animal ,Ecosystem diversity ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Morphometrics ,Appetitive Behavior ,Wing ,biology ,Skull ,Feeding Behavior ,Cell Biology ,Humerus ,biology.organism_classification ,Original Papers ,Biological Evolution ,030104 developmental biology ,medicine.anatomical_structure ,Evolutionary biology ,Anatomy ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Bats show a remarkable ecological diversity that is reflected both in dietary and foraging guilds (FGs). Cranial ecomorphological adaptations linked to diet have been widely studied in bats, using a variety of anatomical, computational and mathematical approaches. However, foraging-related ecomorphological adaptations and the concordance between cranial and postcranial morphological adaptations remain unexamined in bats and limited to the interpretation of traditional aerodynamic properties of the wing (e.g. wing loading [WL] and aspect ratio [AR]). For this reason, the postcranial ecomorphological diversity in bats and its drivers remain understudied. Using 3D virtual modelling and geometric morphometrics (GMM), we explored the phylogenetic, ecological and biological drivers of humeral morphology in bats, evaluating the presence and magnitude of modularity and integration. To explore decoupled patterns of variation across the bone, we analysed whole-bone shape, diaphyseal and epiphyseal shape. We also tested whether traditional aerodynamic wing traits correlate with humeral shape. By studying 37 species from 20 families (covering all FGs and 85% of dietary guilds), we found similar patterns of variation in whole-bone and diaphyseal shape and unique variation patterns in epiphyseal shape. Phylogeny, diet and FG significantly correlated with shape variation at all levels, whereas size only had a significant effect on epiphyseal morphology. We found a significant phylogenetic signal in all levels of humeral shape. Epiphyseal shape significantly correlated with wing AR. Statistical support for a diaphyseal-epiphyseal modular partition of the humerus suggests a functional partition of shape variability. Our study is the first to show within-structure modular morphological variation in the appendicular skeleton of any living tetrapod. Our results suggest that diaphyseal shape correlates more with phylogeny, whereas epiphyseal shape correlates with diet and FG.
- Published
- 2020
- Full Text
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19. Exploring the ontogenetic development of the inner ear in Aardvarks
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Mathieu Santin, Emilie Berlioz, Thomas Lehmann, Nicolas Lenoir, Raphaël Cornette, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
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0301 basic medicine ,Autapomorphy ,Histology ,[SDV]Life Sciences [q-bio] ,Ontogeny ,03 medical and health sciences ,0302 clinical medicine ,biology.animal ,otorhinolaryngologic diseases ,medicine ,Animals ,Inner ear ,Aardvark ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,Ecology, Evolution, Behavior and Systematics ,Cochlea ,Morphometrics ,biology ,Eutheria ,Cell Biology ,biology.organism_classification ,Biological Evolution ,Original Papers ,Semicircular Canals ,030104 developmental biology ,medicine.anatomical_structure ,Evolutionary biology ,Ear, Inner ,sense organs ,Orycteropus ,Anatomy ,030217 neurology & neurosurgery ,Afrotheria ,Developmental Biology - Abstract
The aardvark is the last living Tubulidentata, an order of afrotherian mammals. Afrotheria is supported strongly by molecular analyses, yet sparingly by morphological characters. Moreover, the biology of the aardvark remains incompletely known. The inner ear, and its ontogeny in particular, has not been studied in details yet, though it bears key ecomorphological characters and phylogenetical signal. The aim of this study is to decipher and discuss the ontogenetic development of the different areas of the inner ear of Orycteropus afer. We focused in particular on their relative size and morphological rates of development. Specimens were scanned with 3D imaging techniques. 3D and 2D geometric morphometrics coupled with qualitative descriptions of the petrosal ossification allowed us to evidence several stages through development. Based on our sample, the cochlea is the first structure of the inner ear to reach adult size, but it is the last one to acquire its adult morphology close to parturition. In contrast, after a delayed growth spurt, the semicircular canals reach their mature morphology before the cochlea, concomitantly with the increase of petrosal ossification. The ontogeny of the aardvark inner ear shows similarities with that of other species, but the apex of the cochlea presents some autapomorphies. This work constitutes a first step in the study of the ontogeny of this sensorial organ in Afrotheria.
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- 2020
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20. Vertebral pneumaticity is correlated with serial variation in vertebral shape in storks
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Andrew J. Moore
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Male ,0301 basic medicine ,Histology ,Postcrania ,Biology ,Skeletal pneumaticity ,Thoracic Vertebrae ,Birds ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Morphometrics ,Biomechanics ,Structural integrity ,X-Ray Microtomography ,Cell Biology ,Anatomy ,Original Papers ,Skeleton (computer programming) ,Vertebra ,030104 developmental biology ,Tall vertebrae ,medicine.anatomical_structure ,Cervical Vertebrae ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Birds and their ornithodiran ancestors are unique among vertebrates in exhibiting air-filled sinuses in their postcranial bones, a phenomenon called postcranial skeletal pneumaticity. The factors that account for serial and interspecific variation in postcranial skeletal pneumaticity are poorly understood, although body size, ecology, and bone biomechanics have all been implicated as influencing the extent to which pneumatizing epithelia invade the skeleton and induce bone resorption. Here, I use high-resolution computed-tomography to holistically quantify vertebral pneumaticity in members of the neognath family Ciconiidae (storks), with pneumaticity measured as the relative volume of internal air space. These data are used to describe serial variation in extent of pneumaticity and to assess whether and how pneumaticity varies with the size and shape of a vertebra. Pneumaticity increases dramatically from the middle of the neck onwards, contrary to previous predictions that cervical pneumaticity should decrease toward the thorax to maintain structural integrity as the mass and bending moments of the neck increase. Although the largest vertebrae sampled are also the most pneumatic, vertebral size cannot on its own account for serial or interspecific variation in extent of pneumaticity. Vertebral shape, as quantified by three-dimensional geometric morphometrics, is found to be significantly correlated with extent of pneumaticity, with elongate vertebrae being less pneumatic than craniocaudally short and dorsoventrally tall vertebrae. Considered together, the results of this study are consistent with the hypothesis that shape- and position-specific biomechanics influence the amount of bone loss that can be safely tolerated. These results have potentially important implications for the evolution of vertebral morphology in birds and their extinct relatives.
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- 2020
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21. Morphological evolution of the carnivoran sacrum
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Alejandro Pérez-Ramos, Alberto Martín-Serra, Juan Miguel Esteban, Borja Figueirido, Ceferino Varón-González, David Velasco, and Francisco Pastor
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musculoskeletal diseases ,0301 basic medicine ,Sacrum ,Histology ,Ecomorphology ,Carnivora ,Morphology (biology) ,Biology ,03 medical and health sciences ,Osteology ,0302 clinical medicine ,biology.animal ,medicine ,Animals ,Body Size ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Pelvis ,Morphometrics ,Vertebrate ,Cell Biology ,Anatomy ,Original Papers ,Biological Evolution ,Skeleton (computer programming) ,body regions ,030104 developmental biology ,medicine.anatomical_structure ,Locomotion ,030217 neurology & neurosurgery ,Vertebral column ,Developmental Biology - Abstract
The sacrum is a key piece of the vertebrate skeleton, since it connects the caudal region with the presacral region of the vertebral column and the hind limbs through the pelvis. Therefore, understanding its form and function is of great relevance in vertebrate ecomorphology. However, it is striking that morphometric studies that quantify its morphological evolution in relation to function are scarce. The main goal of this study is to investigate the morphological evolution of the sacrum in relation to its function in the mammalian order Carnivora, using three-dimensional (3D) geometric morphometrics. Principal component analysis under a phylogenetic background indicated that changes in sacrum morphology are mainly focused on the joint areas where it articulates with other parts of the skeleton allowing resistance to stress at these joints caused by increasing muscle loadings. In addition, we demonstrated that sacrum morphology is related to both the length of the tail relativised to the length of the body, and the length of the body relativised to body mass. We conclude that the sacrum in carnivores has evolved in response to the locomotor requirements of the species analysed, but in locomotion, each family has followed alternative morphological solutions to address the same functional demands.
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- 2020
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22. Generating novel tennis racket shape concepts using a theoretical morphospace.
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Grant, Robyn A., Bonhomme, Vincent, and Allen, Tom
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TENNIS rackets ,TENNIS ,PRINCIPAL components analysis ,SPORTING goods ,MORPHOMETRICS - Abstract
Statistical shape analysis, or morphometrics, is a technique commonly used in evolutionary biology to summarise a population of samples. Theoretical morphometrics extends the current population of samples into a theoretical space. Using the lawn tennis racket as an example, this paper showcases the potential of morphometrics as a tool for inspiring design concepts for novel sporting goods. It showcases how morphometrics can be applied to summarise the shape of a sample of rackets and applies theoretical morphometrics to systematically present new candidate designs that fall outside of the inputted existing, racket population. The input population was 514 tennis rackets dating back to the origins of the game. The shape analysis was performed on "front-on" silhouette images of the rackets using the R Package Momocs. The outline shape of each racket was reconstructed using the elliptical Fourier transform curve fitting technique. A principal component analysis performed on the reconstructed outlines showed that >90% of the variance in the shape of the rackets was captured by the first two principal components. An evenly spaced grid of theoretical racket shape outlines was then created in a principal component 2 vs. principal component 1 "morphospace". The limits of this space were then expanded to give a theoretical morphospace that extended beyond the range of the first two principal components for the 514 samples. We propose that the shapes located within such a theoretical morphospace could inspire designers and help them to systematically identify candidates for novel products. Specifically, we suggest that experimenting with wide-angled throats and heads with angled sides might be an interesting starting point for exploring future tennis racket design concepts. The novel technique presented here could be used by a sporting goods brand during the ideation phase of product development to schematically summarise current designs and identify candidates for new ones. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Sub-basin prioritisation from morphometry for erosion management in an undulating rocky terrain: Validating different MCDM techniques with respect to RUSLE in the Chaka River Basin, Eastern India.
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Jaman, Md Hasanur, Das, Souvik, Chatterjee, Jaya, Roy, Subha, and Sengupta, Somasis
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MULTIPLE criteria decision making ,EROSION ,NATURAL resources management ,WATERSHED management ,TOPSIS method ,SOIL erosion ,MORPHOMETRICS - Abstract
In an area like India, where a large number of people are dependent upon agriculture, soil erosion assumes the role of a silent killer. A comprehensive soil management plan requires systematic development and planning at the scale of the natural boundaries, i.e., the watersheds. These watersheds are now actively encouraged to become the planning unit for a wide range of natural resource management. Sub-basin prioritisation with respect to erosion susceptibility, therefore, has become increasingly popular in the last few decades as this helps in optimal distribution, especially in a country like India, where the availability of resources is scarce. Erosion is a complex problem wherein a large number of factors play an important role in influencing this process. Therefore, multi-criteria decision-making (MCDM) techniques are becoming more popular in this domain. However, there are a myriad of MCDM models in literature, and a proper and systematic comparison between such MCDM models may help in deciding on the best possible model in the given categories. This paper has tried to make such a comparison for morphometry-based sub-basin prioritisation in the rocky terrain of the Chaka River Basin, Eastern India. The MCDM models that have been investigated include technique for order of preference by similarity to ideal solution (TOPSIS), VlseKriterijumsk Optimizacija Kompromismo Resenje (VIKOR), multi-objective optimisation on the basis of ratio analysis (MOORA), compound factor (CF), weighted sum model (WSM), weighted product model (WPM) and weighted aggregated sum product assessment (WASPAS). These results were compared with respect to the RUSLE-based annual soil loss of the Chaka Basin with the help of the ROC curve. Results reveal that the MOORA MCDM method is the most reliable (AUC = 0.711), whereas the TOPSIS is the least authentic (AUC = 0.378). The middle domain of the Chaka Basin appears to be highly prioritised as compared to the lower domain. [ABSTRACT FROM AUTHOR]
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- 2024
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24. A COLEÇÃO DE PILÕES LÍTICOS DA RESERVA TÉCNICA DO LAEE/UEM: ACERVAMENTO, MORFOMETRIAS E ESPACIALIZAÇÃO.
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Mahamut Garcia, Julia, Tadeu Mota, Lucio, and Uliana Macella, Marcio Augusto
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ETHNOHISTORY ,LEGAL instruments ,CULTURAL property ,SCIENTIFIC community ,ACQUISITION of data ,MATERIAL culture - Abstract
Copyright of Revista de Arqueologia is the property of Revista de Arqueologia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2024
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25. Morphometry on the sphere: Cartesian and irreducible Minkowski tensors explained and implemented.
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Collischon, Caroline, Klatt, Michael A., Banday, Anthony J., Sasaki, Manami, and Räth, Christoph
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COSMIC background radiation ,MORPHOMETRICS ,STAR maps (Astronomy) ,CONCEPT mapping - Abstract
Minkowski tensors are comprehensive shape descriptors that robustly capture n-point information in complex random geometries and that have already been extensively applied in the Euclidean plane. Here, we devise a framework for Minkowski tensors on the sphere. We first advance the theory by introducing irreducible Minkowski tensors, which avoid the redundancies of previous representations. We, moreover, generalize Minkowski sky maps to the sphere. These maps are a concept of local anisotropy, which easily adjusts to masked data. We demonstrate the power of our new procedure by applying it to simulations and real data of the Cosmic Microwave Background, finding an anomalous region close to the well-known Cold Spot. The accompanying open-source software, litchi, used to generate these maps from data in the HEALPix-format is made publicly available to facilitate broader integration of Minkowski maps in other fields, such as fluid demixing, porous structures, or geosciences more generally. Image data located on spherical surfaces pose unique analytic challenges. In this paper the authors extend the definition of irreducible Minkowski Tensors, powerful additive shape descriptors, to the surface of the sphere and provide an open-source toolset to facilitate their use. [ABSTRACT FROM AUTHOR]
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- 2024
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26. Unravelling the taxonomy of an interstitial fish radiation : three new species of Gouania (Teleostei: Gobiesocidae) from the Mediterranean Sea and redescriptions of G. willdenowi and G. pigra
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Maximilian Wagner, Stephan Koblmüller, and Marcelo Kovačić
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0106 biological sciences ,blunt‐snouted clingfish ,DNA‐barcoding ,Biodiversity ,blunt-snouted clingfish, cryptobenthic fish, DNA-barcoding, intertidal, pebble beach ,Zoology ,Aquatic Science ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,Mediterranean sea ,Gouania ,Species Specificity ,Gobiesocidae ,Mediterranean Sea ,Regular Paper ,Animals ,DNA Barcoding, Taxonomic ,intertidal ,Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Morphometrics ,pebble beach ,biology ,010604 marine biology & hydrobiology ,Fishes ,Regular Papers ,cryptobenthic fish ,X-Ray Microtomography ,biology.organism_classification ,Classification ,Europe ,Taxonomy (biology) ,Animal Distribution ,Meristics - Abstract
The clingfish (Gobiesocidae) genus Gouania Nardo, 1833 is endemic to the Mediterranean Sea and inhabits, unlike any other vertebrate species in Europe, the harsh intertidal environment of gravel beaches. Following up on a previous phylogenetic study, we revise the diversity and taxonomy of this genus by analysing a comprehensive set of morphological (meristics, morphometrics, microcomputed tomography imaging), geographical and genetic (DNA-barcoding) data. We provide descriptions of three new species, G. adriatica sp. nov., G. orientalis sp. nov. and G. hofrichteri sp. nov., as well as redescriptions of G. willdenowi (Risso, 1810) and G. pigra (Nardo, 1827) and assign neotypes for the latter two species. In addition to elucidating the complex taxonomic situation of Gouania, we discuss the potential of this enigmatic clingfish genus for further ecological, evolutionary and biodiversity studies that might unravel even more diversity in this unique Mediterranean fish radiation.
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- 2021
27. Modularity and evolution of flower shape: the role of function, development, and spandrels in
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Andreas Berger, Maria von Balthazar, Dieter Reich, Sara Manafzadeh, Mahboubeh Sherafati, Yannick M. Staedler, Marion Chartier, and Jürg Schönenberger
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0106 biological sciences ,0301 basic medicine ,Most recent common ancestor ,Pollination ,Flower shape ,Physiology ,Developmental modularity ,Integration ,Spandrel ,Modularity ,Flowers ,Plant Science ,Biology ,Generalist and specialist species ,Pollination syndrome ,01 natural sciences ,Birds ,03 medical and health sciences ,Pollinator ,Specialization (functional) ,Animals ,Morphometrics ,Modularity (networks) ,pollination syndrome ,Full Paper ,Research ,Functional modularity ,Pollination syndromes ,Full Papers ,030104 developmental biology ,Evolutionary biology ,Pollen ,Ericaceae ,010606 plant biology & botany - Abstract
Flowers have been hypothesized to contain either modules of attraction and reproduction, functional modules (pollination‐effecting parts) or developmental modules (organ‐specific). Do pollination specialization and syndromes influence floral modularity? In order to test these hypotheses and answer this question, we focused on the genus Erica: we gathered 3D data from flowers of 19 species with diverse syndromes via computed tomography, and for the first time tested the above‐mentioned hypotheses via 3D geometric morphometrics. To provide an evolutionary framework for our results, we tested the evolutionary mode of floral shape, size and integration under the syndromes regime, and – for the first time – reconstructed the high‐dimensional floral shape of their most recent common ancestor. We demonstrate that the modularity of the 3D shape of generalist flowers depends on development and that of specialists is linked to function: modules of pollen deposition and receipt in bird syndrome, and access‐restriction to the floral reward in long‐proboscid fly syndrome. Only size and shape principal component 1 showed multiple‐optima selection, suggesting that they were co‐opted during evolution to adapt flowers to novel pollinators. Whole floral shape followed an Ornstein–Uhlenbeck (selection‐driven) evolutionary model, and differentiated relatively late. Flower shape modularity thus crucially depends on pollinator specialization and syndrome., New Phytologist, 226 (1), ISSN:0028-646X, ISSN:1469-8137
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- 2020
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28. Of puzzles and pavements: a quantitative exploration of leaf epidermal cell shape
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Madelaine E. Bartlett, Joseph P. Gallagher, Róza Vőfély, Grace D Pisano, Siobhan A. Braybrook, Gallagher, Joseph [0000-0003-0378-7112], Bartlett, Madelaine [0000-0002-0369-8606], Braybrook, Siobhan A [0000-0002-4308-5580], and Apollo - University of Cambridge Repository
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0106 biological sciences ,0301 basic medicine ,Vascular plant ,Physiology ,Context (language use) ,Plant anatomy ,Plant Science ,pavement cell ,phylogeny ,01 natural sciences ,cell shape ,Plant Epidermis ,diversity ,03 medical and health sciences ,Form and function ,Plant Cells ,Arabidopsis ,Botany ,Image Processing, Computer-Assisted ,Arabidopsis thaliana ,Eudicots ,030304 developmental biology ,Morphometrics ,0303 health sciences ,Pavement cells ,Full Paper ,morphometrics ,biology ,Research ,food and beverages ,Plants ,Full Papers ,15. Life on land ,biology.organism_classification ,Trichome ,Plant Leaves ,030104 developmental biology ,Plant morphology ,Anisotropy ,Fern ,010606 plant biology & botany - Abstract
SummaryThe epidermal cells of leaves lend themselves readily to observation and display many shapes and types: tabular pavement cells, complex trichomes, and stomatal complexes1. Pavement cells fromZea mays(maize) andArabidopsis thaliana(arabidopsis) both have highly undulate anticlinal walls and are held as representative of monocots and eudicots, respectively. In these two model species, we have a nuanced understanding of the molecular mechanisms that generate undulating pavement cell shape2–9. This model-system dominance has led to two common assumptions: first, that particular plant lineages are characterized by particular pavement cell shapes; and second, that undulatory pavement cell shapes are common enough to be model shapes. To test these assumptions, we quantified pavement cell shape in the leaves of 278 vascular plant taxa and assessed cell shape metrics across large taxonomic groups. We settled on two metrics that described cell shape diversity well in this dataset: aspect ratio (degree of cell elongation) and solidity (a proxy for margin undulation). We found that pavement cells in the monocots tended to have weakly undulating margins, pavement cells in ferns had strongly undulating margins, and pavement cells in the eudicots showed no particular degree of undulation. Indeed, we found that cells with strongly undulating margins, like those of arabidopsis and maize, were in the minority in seed plants. At the organ level, we found a trend towards cells with more undulating margins on the abaxial leaf surface vs. the adaxial surface. We also detected a correlation between cell and leaf aspect ratio: highly elongated leaves tended to have highly elongated cells (low aspect ratio), but not in the eudicots. This indicates that while plant anatomy and plant morphology can be connected, superficially similar leaves can develop through very different underlying growth dynamics (cell expansion and division patterns). This work reveals the striking diversity of pavement cell shapes across vascular plants, and lays the quantitative groundwork for testing hypotheses about pavement cell form and function.
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- 2018
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29. Transitional chelal digit patterns in saprophagous astigmatan mites
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Bowman, Clive E.
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- 2024
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30. Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
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Igor Musauer Kessous, Fabiano Salgueiro, Fernanda Bered, Andrea Ferreira da Costa, Christine D. Bacon, Beatriz Neves, Camila Martini Zanella, Fernando Pérez Uribbe, and Alexandre Antonelli
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0106 biological sciences ,Bromeliaceae ,Species complex ,Species distribution ,Vriesea ,Biodiversity ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,cpDNA ,geometric morphometrics ,Ecology, Evolution, Behavior and Systematics ,biogeography ,030304 developmental biology ,Morphometrics ,0303 health sciences ,Bract ,Ecology ,biology ,biology.organism_classification ,Biodiversity hotspot ,floral bract shape ,Functional Traits ,Genetic structure ,leaf size ,Research Paper - Abstract
Aim Understanding the complex interaction and relative contributions of factors involved in species and trait diversification is crucial to gain insights into the evolution of Neotropical biodiversity. Here, we investigated the drivers of morphological variation in bromeliads along a latitudinal gradient in a biodiversity hotspot. Location Atlantic Forest, Brazil. Taxon A species complex in the genus Vriesea (Bromeliaceae). Methods We measured shape and size variation for 208 floral bracts and 176 leaves in individuals from 14 localities using geometric morphometrics. We compiled data for two chloroplast regions (matK and trnL-F) from 89 individuals to assess genetic diversity, population structure and phylogenetic relationships. We tested the influence of climate, altitude and genetic distance on morphological traits using linear statistical models. Results Temperature seasonality is a main driver of floral bract shape. Together with precipitation, it also explains changes in leaf size across the latitudinal gradient. Shifts in morphological traits are correlated with genetic structure and partly support the recent taxonomic delimitation proposed for the species complex. The species started to diversify in the Pliocene ca. 5 Mya. We detected a phylogeographical break in species distribution into northern and southern clades between the Bocaina region and the southern portion of the Atlantic Forest. Main conclusions We identify how geography and environmental changes through time shape floral bracts and leaves in similar ways. At highly seasonal sites with lower annual precipitation (in the southern subtropical portion of the Atlantic Forest), leaves are larger and floral bracts are wide-elliptic, making them better suited for increased water accumulation. In contrast, at less seasonal sites (in the tropical north, where rainfall is more abundant and temperatures are higher), leaves are narrower and floral bracts are lanceolate-shaped, facilitating water drainage. The biogeographical break we identified suggests a role of tectonic activity and climatic oscillations in promoting species divergence and diversification.
- Published
- 2019
31. Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: implications for understanding cluster density
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Daniel H. Chitwood, Jason P. Londo, Keith E. Duncan, Christopher N. Topp, Allison J. Miller, Mao Li, Ni Jiang, and Laura L. Klein
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0106 biological sciences ,0301 basic medicine ,3D architecture ,Physiology ,Plant Science ,Biology ,01 natural sciences ,topological data analysis ,03 medical and health sciences ,Imaging, Three-Dimensional ,morphology ,Cluster Analysis ,Vitis ,inflorescence ,Cluster analysis ,Phylogeny ,Geometric data analysis ,2. Zero hunger ,Morphometrics ,Phylogenetic tree ,phylogenetic analysis ,Vitis spp ,X-Rays ,Discriminant Analysis ,15. Life on land ,Research Papers ,persistent homology ,030104 developmental biology ,Inflorescence ,Evolutionary biology ,Pedicel ,Fruit ,Multivariate Analysis ,Trait ,Topological data analysis ,Growth and Development ,X-ray tomography ,010606 plant biology & botany - Abstract
Grapevine 3D inflorescence architecture was comprehensively characterized among 10 wild Vitis species to reveal new phenotypic and evolutionary relationships., Inflorescence architecture provides the scaffold on which flowers and fruits develop, and consequently is a primary trait under investigation in many crop systems. Yet the challenge remains to analyse these complex 3D branching structures with appropriate tools. High information content datasets are required to represent the actual structure and facilitate full analysis of both the geometric and the topological features relevant to phenotypic variation in order to clarify evolutionary and developmental inflorescence patterns. We combined advanced imaging (X-ray tomography) and computational approaches (topological and geometric data analysis and structural simulations) to comprehensively characterize grapevine inflorescence architecture (the rachis and all branches without berries) among 10 wild Vitis species. Clustering and correlation analyses revealed unexpected relationships, for example pedicel branch angles were largely independent of other traits. We identified multivariate traits that typified species, which allowed us to classify species with 78.3% accuracy, versus 10% by chance. Twelve traits had strong signals across phylogenetic clades, providing insight into the evolution of inflorescence architecture. We provide an advanced framework to quantify 3D inflorescence and other branched plant structures that can be used to tease apart subtle, heritable features for a better understanding of genetic and environmental effects on plant phenotypes.
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- 2019
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32. Chronic exposure of the North Atlantic copepod Calanus finmarchicus (Gunnerus, 1770) to CO2-acidified seawater; effects on survival, growth and development.
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Pedersen, S. A., Hansen, B. H., Altin, D., and Olsen, A. J.
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CALANUS finmarchicus ,ACIDIFICATION ,COPEPODA physiology ,PHYSIOLOGICAL effects of carbon dioxide ,MORPHOMETRICS ,CARBON dioxide in seawater - Abstract
The impact of chronic exposure to CO
2 -acidified seawater on survival, growth and development was investigated in the North Atlantic copepod Calanus finmarchicus. Using a custom developed microcosm system fertilized eggs and subsequent development stages were exposed to normal seawater (390 ppm CO2 ) or one of three different levels of CO2 -induced acidification (3300, 7300, 9700 ppm CO2 ). Following the 28 day exposure period survival was found to be unaffected by exposure to 3300 ppm CO2 , but significantly reduced at 7300 and 9700 ppm CO2 . Also, the proportion of copepodite stages IV to VI observed in the different treatments was significantly affected in a manner that may indicate a CO2 -induced retardation of the rate of ontogenetic development. Morphometric analysis revealed a significant increase in size (prosome length) and lipid storage volume in stage IV copepodites exposed to 3300 ppm CO2 and reduced size in stage III copepodites exposed to 7300 ppm CO2 . Together, the findings indicate that a pCO2 level ≤2000 ppm (the highest CO2 level expected within year 2300) will probably not directly affect survival in C. finmarchicus. Long-term experiments at more moderate CO2 levels are however necessary before the possibility that growth and development may be affected below ≤2000 ppm CO2 can be ruled out. [ABSTRACT FROM AUTHOR]- Published
- 2013
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33. Occurrence of an interesting Sweeper fish (Family: Pempheridae) from northern part of east coast of India.
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Ray, D., Mohanty, S. R., and Mohapatra, Anil
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MORPHOMETRICS ,FISH communities ,FISH populations ,COASTAL ecology - Abstract
Six vibrant coloured Sweeper fish or pempherid, Pempheris malabarica were collected from Digha Mohana of West Bengal and Chandipur fish landing centre of Odisha coast. For the first time this paper reports the family Pempheridae from West Bengal coast and occurrence of species P. malabarica in Odisha coast. This paper describes morphometric and also meristic counts of the species from the region for the first time. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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34. High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry.
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Nadkarni, Rohan, Han, Zay Yar, Anderson, Robert J., Allphin, Alex J., Clark, Darin P., Badea, Alexandra, and Badea, Cristian T.
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X-ray computed microtomography ,ENTORHINAL cortex ,MORPHOMETRICS ,CINGULATE cortex ,BRAIN imaging ,ALZHEIMER'S disease - Abstract
Background: Brain region segmentation and morphometry in humanized apolipoprotein E (APOE) mouse models with a human NOS2 background (HN) contribute to Alzheimer's disease (AD) research by demonstrating how various risk factors affect the brain. Photon-counting detector (PCD) micro-CT provides faster scan times than MRI, with superior contrast and spatial resolution to energy-integrating detector (EID) micro-CT. This paper presents a pipeline for mouse brain imaging, segmentation, and morphometry from PCD micro-CT. Methods: We used brains of 26 mice from 3 genotypes (APOE22HN, APOE33HN, APOE44HN). The pipeline included PCD and EID micro-CT scanning, hybrid (PCD and EID) iterative reconstruction, and brain region segmentation using the Small Animal Multivariate Brain Analysis (SAMBA) tool. We applied SAMBA to transfer brain region labels from our new PCD CT atlas to individual PCD brains via diffeomorphic registration. Region-based and voxel-based analyses were used for comparisons by genotype and sex. Results: Together, PCD and EID scanning take ~5 hours to produce images with a voxel size of 22 μm, which is faster than MRI protocols for mouse brain morphometry with voxel size above 40 μm. Hybrid iterative reconstruction generates PCD images with minimal artifacts and higher spatial resolution and contrast than EID images. Our PCD atlas is qualitatively and quantitatively similar to the prior MRI atlas and successfully transfers labels to PCD brains in SAMBA. Male and female mice had significant volume differences in 26 regions, including parts of the entorhinal cortex and cingulate cortex. APOE22HN brains were larger than APOE44HN brains in clusters from the hippocampus, a region where atrophy is associated with AD. Conclusions: This work establishes a pipeline for mouse brain analysis using PCD CT, from staining to imaging and labeling brain images. Our results validate the effectiveness of the approach, setting a foundation for research on AD mouse models while reducing scanning durations. [ABSTRACT FROM AUTHOR]
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- 2024
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35. Comprehensive 3D phenotyping reveals continuous morphological variation across genetically diverse sorghum inflorescences
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Elizabeth A. Kellogg, Mon-Ray Shao, Dan Zeng, Mao Li, Tao Ju, and Christopher N. Topp
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0106 biological sciences ,0301 basic medicine ,phenotyping ,Physiology ,Plant Science ,01 natural sciences ,03 medical and health sciences ,Race (biology) ,Phenomics ,X‐ray ,panicle ,Inflorescence ,Domestication ,Panicle ,Morphometrics ,biology ,Full Paper ,Research ,Reproducibility of Results ,phenomics ,Full Papers ,inflorescences ,Sorghum ,biology.organism_classification ,030104 developmental biology ,Phenotype ,Evolutionary biology ,Trait ,sorghum ,Edible Grain ,010606 plant biology & botany - Abstract
Summary ●Inflorescence architecture in plants is often complex and challenging to quantify, particularly for inflorescences of cereal grasses. Methods for capturing inflorescence architecture and for analyzing the resulting data are limited to a few easily captured parameters that may miss the rich underlying diversity.●Here, we apply X‐ray computed tomography combined with detailed morphometrics, offering new imaging and computational tools to analyze three‐dimensional inflorescence architecture. To show the power of this approach, we focus on the panicles of Sorghum bicolor, which vary extensively in numbers, lengths, and angles of primary branches, as well as the three‐dimensional shape, size, and distribution of the seed.●We imaged and comprehensively evaluated the panicle morphology of 55 sorghum accessions that represent the five botanical races in the most common classification system of the species, defined by genetic data. We used our data to determine the reliability of the morphological characters for assigning specimens to race and found that seed features were particularly informative.●However, the extensive overlap between botanical races in multivariate trait space indicates that the phenotypic range of each group extends well beyond its overall genetic background, indicating unexpectedly weak correlation between morphology, genetic identity, and domestication history.
- Published
- 2019
36. The intraspecific diversity of tooth morphology in the large‐spotted catshark Scyliorhinus stellaris : insights into the ontogenetic cues driving sexual dimorphism
- Author
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Fidji Berio, Mélanie Debiais-Thibaud, Allowen Evin, Nicolas Goudemand, Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Inflammasome NLRP3 – NLRP3 Inflammasome, Centre International de Recherche en Infectiologie - UMR (CIRI), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Centre International de Recherche en Infectiologie (CIRI), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Université Jean Monnet - Saint-Étienne (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Université Jean Monnet - Saint-Étienne (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
0301 basic medicine ,Male ,Histology ,Biometry ,Ontogeny ,Heterodont ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,gynandric heterodonty ,[SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology ,Juvenile ,Animals ,14. Life underwater ,geometric morphometrics ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Morphometrics ,Sex Characteristics ,biology ,scyliorhinids ,Anatomic Variation ,Cell Biology ,X-Ray Microtomography ,monognathic heterodonty ,biology.organism_classification ,Original Papers ,Catshark ,Sexual dimorphism ,stomatognathic diseases ,030104 developmental biology ,Evolutionary biology ,Sharks ,ontogenetic trajectory ,Developmental plasticity ,Female ,Anatomy ,Tooth ,030217 neurology & neurosurgery ,Developmental Biology ,Scyliorhinus stellaris - Abstract
International audience; Teeth in sharks are shed and replaced throughout their lifetime. Morphological dental changes through ontogeny have been identified in several species and have been correlated with shifts in diet and the acquisition of sexual maturity. However, these changes were rarely quantified in detail along multiple ontogenetic stages, which makes it difficult to infer the developmental processes responsible for the observed plasticity. In this work, we use micro‐computed tomography and 3D geometric morphometrics to describe and analyze the tooth size and shape diversity across three ontogenetic stages (hatchling, juvenile, and sexually mature) in the large‐spotted catshark Scyliorhinus stellaris (Linnaeus, 1758). We first describe the intra‐individual variation of tooth form for each sex at each ontogenetic stage. We provide a tooth morphospace for palatoquadrate and Meckelian teeth and identify dental features, such as relative size and number of cusps, involved in the range of variation of the observed morphologies. We then use these shape data to draw developmental trajectories between ontogenetic stages and for each tooth position within the jaw to characterize ontogenetic patterns of sexual dimorphism. We highlight the emergence of gynandric heterodonty between the juvenile and mature ontogenetic stages, with mature females having tooth morphologies more similar to juveniles’ than mature males that display regression in the number of accessory cusps. From these data, we speculate on the developmental processes that could account for such developmental plasticity in S. stellaris.
- Published
- 2020
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37. Interrogating Random and Systematic Measurement Error in Morphometric Data
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Collyer, Michael L. and Adams, Dean C.
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- 2024
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38. Population Status of a Regionally Endangered Plant, Lunaria rediviva (Brassicaceae), near the Eastern Border of Its Range.
- Author
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Khapugin, Anatoliy A. and Chugunov, Gennadiy G.
- Subjects
BORDERLANDS ,FLOWERING of plants ,BRASSICACEAE ,PLANT populations ,PARAMETERS (Statistics) ,PLANT species - Abstract
Simple Summary: This paper is devoted to the study of the Lunaria rediviva population at the eastern border of its range (National Park "Smolny", Republic of Mordovia, Russia) in 2013–2018. Ontogenetic structure of the population has been identified by distinguishing juvenile, mature vegetative, and reproductive individuals. We found changes in the ontogenetic structure of the population from 2013 to 2018. The type of its population changed from vegetatively oriented to bimodal, with a decrease in proportion of mature vegetative individuals. We found a significant negative correlation between the fruit set and the moisture in mid-July, and wind strength in late May and early June. It was found that the number of both flowers and fruits per individual is significantly positively correlated with the precipitation in late April, and they are negatively correlated with these parameters and the temperature in late July. We assume that the habitat shading negatively influences the L. rediviva population status. Long-term studies of plant populations provide valuable knowledge on the influence of various environmental factors on plant species. The status of edge-range species populations is especially important to be studied due to their higher vulnerability to extinction. This paper aimed to study the Lunaria rediviva population at the eastern border of its range (National Park "Smolny", Republic of Mordovia, Russia). The study was carried out in 2013–2018. Assessment of the L. rediviva population was performed on the basis of individual parameters of plants (height of the individual, number of leaves per individual, number of inflorescences, flowers, fruits per one generative individual, and the fruit set), and density of individuals. Ontogenetic structure of the population was identified by distinguishing juvenile, mature vegetative, and reproductive individuals. The relationships between weather conditions (mean values of temperature, air moisture, wind strength, precipitation divided to three decades per month) and population parameters of L. rediviva were identified. Results showed changes in the ontogenetic structure of the population. The type of its population changed from vegetatively oriented to bimodal, with a decrease (R
2 = 0.686) in the proportion of mature vegetative individuals. We demonstrated a significant decline in some parameters of the L. rediviva reproduction. We found a significant negative correlation between the fruit set and the moisture at mid-July (r = −0.84, p < 0.05), and wind strength in late May (r = −0.83, p < 0.05) and early June (r = −0.83, p < 0.05). It was found that the number of both flowers and fruits per individual is significantly positively correlated with the precipitation in late April, and they negatively correlated with these parameters and the temperature in late July. We assume that the habitat shading negatively influences the L. rediviva population status. [ABSTRACT FROM AUTHOR]- Published
- 2023
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39. Morphometry of the patellar tendon using a simple tracing method: a gold standard for anterior cruciate ligament reconstruction.
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Latiff, Sabiha and Olateju, Oladiran Ibukunolu
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ANTERIOR cruciate ligament surgery ,PATELLAR tendon ,ANTERIOR cruciate ligament ,MORPHOMETRICS ,NORMALIZED measures - Abstract
The anterior cruciate ligament (ACL) is mostly damaged in sporting activities. To reconstruct the damaged ACL, a patellar tendon (PT) is often the most preferred graft due to its fast healing and bone integration i.e. bone-patellar tendon-bone graft. Suitability of the PT often depends on the morphometric profile of the tendon. This study reported on the harvestable surface area (SA) of the tendon using a simple tracing method. The PT of 79 adult formalin-fixed cadavers of South Africans of European Ancestry were dissected, and the margins of the PT were traced on a wax paper before the tracings were scanned. The SA, straight proximal width (SPW), curved proximal width (CPW), straight distal width (SDW), curved distal width (CDW) and length of tendon (LOT) from the digitized image of the PT was measured. In addition, the length of the lower limbs was measured to normalize the measurements. The results showed no significant side differences, and the measurements were not sexually dimorphic. A strong correlation was reported for SA vs. LOT, SPW vs. CPW and SDW vs. CDW for both sexes and sides. The presented morphological profile provides additional information on the usability of the graft and with respect to healing and recovery. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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40. Correlation between dental arch form and OSA severity in adult patients: an observational study.
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Ciavarella, Domenico, Campobasso, Alessandra, Conte, Elisa, Burlon, Giuseppe, Guida, Laura, Montaruli, Graziano, Cassano, Michele, Laurenziello, Michele, Illuzzi, Gaetano, and Tepedino, Michele
- Subjects
DENTAL arch ,SLEEP apnea syndromes ,INVERSE relationships (Mathematics) ,SCIENTIFIC observation - Abstract
Background: The role of interdental widths and palatal morphology on the development of obstructive sleep apnea (OSA) has not been well investigated in adult patients yet. The aim of this paper was to assess the morphology of maxilla and mandibular dental arches on three-dimensional (3D) casts and to correlate these measurements with the severity of OSA. Methods: Sixty-four patients (8 women and 56 men, mean age 52.4) with a diagnosis of mild-to-moderate OSA were retrospectively enrolled. On each patient, home sleep apnea test and 3D dental models were collected. Apnea-hypopnea index (AHI) and oxygen desaturation index (ODI) were recorded, as well as the dental measurements including inter-molar distance, anterior and posterior widths of maxillary and mandibular arches, upper and lower arch lengths, palatal height, and palatal surface area. The respiratory and dental variables were then correlated. Result: A statistically inverse correlation was found between ODI and anterior width of lower arch, maxillary arch length, palatal height, and palatal area. AHI showed a significant inverse correlation with anterior width of mandibular arch and maxillary length. Conclusion: A significant inverse correlation between maxillary and mandibular morphology and respiratory parameters was shown in the present paper. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
41. EFFECTIVENESS OF THE DENITE®CR FOR BIOLOGICAL RECULTIVATION OF HEAVY METALS CONTAMINATED SOIL.
- Author
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Omirbekova, N. Zh., Omirbek, A. Zh., Sviderskiy, A. K., Ibrayeva, Y., Zhanbolat, Zh., Kaziyev, A., and Arislanova, A. I.
- Subjects
HEAVY metals ,CADMIUM chloride ,FOOD chains ,MORPHOMETRICS ,ROOT systems (Algebra) ,ENVIRONMENTAL sciences - Abstract
Copyright of Eurasian Journal of Ecology is the property of Al-Farabi Kazakh National University and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
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42. First tracks of giant land turtles from the Iberian Lower Cretaceous (Soria, Spain): Testudopodus iberiae, new ichnogenus new ichnospecies.
- Author
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Fuentes-Vidarte, Carolina, Meijide-Fuentes, Manuel, Meijide-Fuentes, Federico, and Meijide-Calvo, Manuel
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FOOTPRINTS ,MUNICIPAL government ,TURTLES ,MORPHOMETRICS ,IMPRESSION management - Abstract
Copyright of Boletín Geológico y Minero is the property of Instituto Tecnologico Geominero De Espana and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
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- View/download PDF
43. Las esferas y esferoides líticos de la colección “Juan Carlos Piscia” (golfo San Matías, Río Negro, Argentina).
- Author
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Alberti, Jimena and Cardillo, Marcelo
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ARCHAEOLOGICAL museums & collections ,RAW materials ,COLLECTIONS ,MORPHOMETRICS - Abstract
Copyright of Intersecciones en Antropología is the property of Universidad Nacional del Centro de la Provincia de Buenos Aires, Facultad de Ciencias Sociales and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
- Full Text
- View/download PDF
44. Morphometrics highlights subspecies differentiation of continental (Rangifer t. tarandus) and insular (Rangifer t. platyrhynchus) Norwegian reindeer.
- Author
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Yu, Fangzhou, Bignon-Lau, Olivier, Pedersen, Åshild Ønvik, Strand, Olav, Veiberg, Vebjørn, Wiig, Øystein, and Evin, Allowen
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SUBSPECIES ,MORPHOMETRICS ,BONE measurement ,REINDEER ,BODY size ,LENGTH measurement - Abstract
Reindeer (Rangifer tarandus) is an emblematic species with several recognized subspecies. Two reindeer subspecies are present in Norway: the wild and semi-domestic European tundra reindeer (R. tarandus tarandus) in continental Norway, and Svalbard reindeer (R. tarandus platyrhynchus) endemic to this archipelago. The main aim of this paper is to give a descriptive and quantified analysis of the modern wild reindeer morphological diversity. The morphometric variation was quantified, based on 262 adult specimens of both sexes, by both linear measurements, analysed through log shape ratio computed from post-cranial bones and teeth measurements, and landmarks and sliding semi-landmarks based geometric morphometrics (GMM) to quantify molars size and shape. All anatomical parts (teeth, metatarsals, metacarpals) highlighted differences between the continental and insular subspecies. Our main results pointed out morphometrics characteristics of nowadays reindeer subspecies, like differences in proportions between the size of metapodials or lower cheek teeth with the body size, that could be of great interest for archaeozoological research. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
45. Chelidonichthys lucerna (Linnaeus, 1758) Population Structure in the Northeast Atlantic Inferred from Landmark-Based Body Morphometry.
- Author
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Ferreira, Inês, Schroeder, Rafael, Mugerza, Estanis, Oyarzabal, Iñaki, McCarthy, Ian D., and Correia, Alberto T.
- Subjects
PHENOTYPIC plasticity ,FISH morphology ,MORPHOMETRICS ,GEOGRAPHICAL distribution of fishes ,CONTINENTAL shelf ,FISH populations - Abstract
Simple Summary: This is the first study to investigate the spatial distribution and population structure of the tub gurnard (Chelidonichthys lucerna) in different regions of the northeast Atlantic. To analyze fish body shape, a morphometry-based method, which helps identify variations in fish body shape that may exist due to genetic factors or environmental adaptability, was used. This study relied on C. lucerna individuals captured in the following three fishing areas: Conwy Bay (United Kingdom), Biscay Bay (Spain) and Matosinhos (Portugal). The findings indicate the existence of significant regional differences in fish bodies, thus highlighting the existence of distinct fish populations in the three regions. Results also suggest that the Spanish and British populations may inhabit similar habitats, as some similarities in body shape were found. To confirm these findings, we recommend future research using a holistic approach with alternative and complimentary stock assessment tools. The study of geometric morphometrics among stocks has proven to be a valuable tool in delineating fish spatial distributions and discriminating distinct population units. Variations in fish body morphology can be linked to genetic factors or to phenotypic adaptability in response to environmental variables. The tub gurnard (Chelidonichthys lucerna) is a demersal species that usually lives in the bottom of the continental shelf, being widely distributed along the northeast Atlantic, Mediterranean and Black seas. Worldwide interest in the species has increased since 2006, when ICES recognized its potential for commercial exploitation. However, despite its broad geographic occurrence, to date, research on C. lucerna population structure at large spatial scales is still lacking. In this paper, body geometric morphometrics, using a landmark-based truss network, was applied in order to discriminate C. lucerna populations caught in three different fishery grounds areas along the northeast Atlantic: Conwy Bay (United Kingdom), Biscay Bay (Spain) and Matosinhos (Portugal). The results obtained in this study revealed a high overall relocation success (95%) of samples to their original locations, thus demonstrating the existence of significant regional differences and indicating that we are dealing with different fish population units. Moreover, the data revealed a partial overlap between individuals from Spain and United Kingdom, suggesting that in geographically distant areas these populations may inhabit similar environments. However, to corroborate these findings, future works using a holistic approach with alternative and complimentary stock assessment tools (e.g., genetic and phenotypic natural tags) are highly recommended. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
46. CHANGES IN BODY WEIGHT AND MORPHOMETRIC DURING VARYING GROWTH PHASES OF FRESHWATER TORTOISE (GEOCHELONE NIGRA) IN INTENSIVE MANAGEMENT PRACTICES.
- Author
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Kperegbeyi, J. I., Nwadiolu, R., Ewododhe, A. C. A., Onwumere-Idolor, O. S., Adaigho, D. O., Samuel, A. P., and Nwankwo, W.
- Subjects
BODY weight ,GEOCHELONE ,AGRICULTURAL industries ,MORPHOMETRICS ,EMPIRICAL research - Abstract
Purpose: In the Agriculture industry, tortoises may not have a great commercial value compared with chicken and hoofed mammals; nevertheless, they have a substantial economic value for food, medicine, and ecological services. The empirical work was conducted at the Departmental Research Center (DRC), to investigate the impact of growth phases on body weight (BW) and morphometrics of different age groups. Design/ Methodology/ Approach: Eighty freshwater tortoises of 4 age groups (20 hatchlings, 20 juveniles, 20 sub-adults and 20 adults) were obtained from the Ministry of Forestry and Wildlife in Nigeria. A deep litter housing system was used for the present study. Tortoises were fed with cooked meat, concentrate, fermented cassava, and palm fruits. Findings: The mean BW ranged from 41.00g - 848.00g. The result revealed that the mean BW of the tortoise value (503g). The Coefficient of Variance (CV) of morphometrics ranged from 9.73% - 15.63%. The straight carapace length (SCL) had a higher CV value (15.63%), followed by plastron length (PL) (12.90%) and least value (9.73%) for carapace width (CW). There was a huge difference in all the morphometrics except SCL and CW for sub-adult and adult tortoises. The result revealed that SCL, CW, PL and plastron width (PW) differed distinctly from BW. The correlation coefficient of BW and morphometric of juvenile growth phase (JGP) and sub-adult phase (SAGP) ranged from (0.326 - 0.964) and (0.275 - 0.953) respectively. Research Limitation/Implications: This research focused on Nigeria's availability and sustainability of freshwater tortoises. Practical Implication: This paper has potential implications for understanding the management and improvement of the freshwater tortoise in Nigeria. Social Implication: This study will enhance the availability and development of freshwater tortoise for policy-makers in addressing sustainable food security through social, economic and environmental stability for the present and future generations. Originality/Value: This study is based on the data collected on body weight and morphometric traits during growth phases. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
47. Morphophonemic analysis boosts orthographic and semantic learning of academic words for Spanish–English bilinguals.
- Author
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Zhang, Jie, Hou, Zhenjie, Kharabi‐Yamato, Lana, Winton, Stephen, Iluore, Azizah Curry, Lee, Grace, Zhang, Huan, and Nam, Rosa
- Subjects
- *
ORTHOGRAPHY & spelling , *SEMANTICS , *MORPHOLOGY , *MORPHOMETRICS , *ONTOGENY , *VOXEL-based morphometry - Abstract
Background: Upper elementary grade students encounter increasingly complex texts with abundant morphologically complex words. Despite the positive effects of morphology‐based vocabulary instruction, emergent bilinguals with limited word reading skills may need additional support. Methods: This study investigated the effects of morphological analysis and morphophonemic analysis instruction on the orthographic and semantic learning of morphologically complex academic words. Fourth‐ and fifth‐grade Spanish–English bilingual students (N = 30) in the United States participated in two learning tasks. In learning task one, participants learned two sets of carefully matched derivational words under morphological and whole‐word learning conditions. In learning task two, the same participants learned two other sets of words under morphophonemic and whole‐word learning conditions. Each learning task included two learning sessions interweaved by meaning recall and spelling production assessments. Cross‐classified multilevel regression was used to assess the effects of intervention conditions, child and item predictors, as well as cross‐level interactions. Results: Findings showed no significant difference in meaning recall and spelling measures between morphological and whole‐word conditions. Students performed significantly better in the morphophonemic condition than in the whole‐word condition for both meaning and affix spelling outcomes. The effect of morphophonemic intervention over whole word condition was stronger for younger students and words of lower base frequencies. Student meaning and spelling performance was significantly predicted by their word reading skills. Conclusions: Morphophonemic analysis instruction enhances word meaning recall and spelling of complex derivative words. Highlights: What is already known about this topicUpper elementary emergent bilinguals experience challenges in comprehending complex texts largely due to their limited English vocabulary.Morphology‐focused interventions led to generally positive literacy gains among native English speakers and emergent bilinguals. What this paper addsCompared with whole‐word learning, morphophonemic analysis instruction enhanced word meaning recall and spelling of derivative words for bilinguals who were still developing word reading skills.Compared with the whole‐word learning approach, no advantage was observed for the morphology‐focused instruction on word meaning or spelling recall. Implications for theory, policy, or practiceMaking explicit linkages between word decoding and meaning enhances new word learning for emergent bilingual students.Emergent bilingual students with limited word reading skills benefit from additional phonological support in morphology instruction. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. An evolutionary approach to behavioural morphometrics
- Author
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Melanie Däschinger, Andreas Knote, and Sebastian von Mammen
- Subjects
0301 basic medicine ,Morphometrics ,Development environment ,business.industry ,Volumetric data ,Short paper ,Geometric shape ,Machine learning ,computer.software_genre ,Set (abstract data type) ,03 medical and health sciences ,030104 developmental biology ,Genetic algorithm ,Artificial intelligence ,Data mining ,User interface ,business ,computer - Abstract
In this short paper, we briefly outline the design of a new framework, BOODLE (BiOlOgical DeveLopment Environment), that empowers biologists to retrace developmental processes at the intercellular level. This framework allows one to import volumetric data as retrieved by micro-CT scanners. Meta-information such as labels of specific regions can be imported or annotated interactively in the virtual simulation environment. Consistently labelled series of multiple embryonic scans that have been recorded at different times capture developmental processes. In order to generate models to retrace the underlying dynamics, we deploy a Genetic Algorithm (GA). The GA optimises the parameters of physics-based virtual cells to retrace the captured processes in a simulation. In particular, the fitness of a set of parameters is calculated based on comparisons between the emerging geometric shapes and the real-world information. The real-world data is provided by said annotations or inferred from grey values captured by the CT scans. To support effective evolutionary optimisation, the user interface supports the user during the import and refinement of CT-data sets, the editing of landmarks, the popluating of imported volumetric data with virtual cells, and the configuration of the Genetic Algorithm.
- Published
- 2017
- Full Text
- View/download PDF
49. Paurodontella parapitica n. sp. (Nematoda: Hexatylina, Sphaerularioidea) from Kermanshah Province, Western Iran
- Author
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Mehrab Esmaeili, Weimin Ye, and Ramin Heydari
- Subjects
new species ,0106 biological sciences ,Morphometrics ,education.field_of_study ,Population ,010607 zoology ,Apple tree ,Zoology ,Anatomy ,taxonomy ,Biology ,01 natural sciences ,Contributed Paper ,Sponge spicule ,lcsh:Biology (General) ,Excretory system ,Polyphyly ,28S ribosomal RNA ,morphology ,Taxonomy (biology) ,28S D2/D3 ,education ,lcsh:QH301-705.5 ,molecular phylogeny ,010606 plant biology & botany - Abstract
Paurodontella parapitica n. sp., collected from the rhizosphere of an apple tree in Kermanshah province, western Iran, is described. The new species is characterized by a body length of 505 to 723 μm (females) and 480 to 600 μm (males), lip region continuous by depression; 7 to 8 μm broad, 3 to 4 μm high, stylet length 7 to 9 μm or 1 to 1.3 times the lip region diameter, short postuterine sac of 4 to 6 μm long, lateral fields with five to six incisures; outer incisures crenated and inner incisures weakly crenated, excretory pore situated 90 to 100 μm from anterior end; functional males common in the population, with spicules 24 to 26 μm long. Tail of both sexes similar, almost straight and elongate-conoid. The newspecies resembles in morphology and morphometrics to four known species of the genus, namely P. apitica, P. minuta, P. myceliophaga, and P. sohailai. The results of phylogenetic analyses based on sequences of D2/D3 expansion region of 28S rRNA gene revealed this genus is polyphyletic in four different clades in Tylenchid.
- Published
- 2016
- Full Text
- View/download PDF
50. Sectonema caobangense sp. n. from Vietnam (Nematoda, Dorylaimida, Aporcelaimidae)
- Author
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Thi Anh Duong Nguyen, Joaquín Abolafia, Sergio Álvarez-Ortega, Reyes Peña-Santiago, and Michael Bonkowski
- Subjects
0106 biological sciences ,Morphometrics ,morphometrics ,biology ,Aporcelaimidae ,Bayesian inference ,010607 zoology ,Dorylaimida ,Anatomy ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Contributed Paper ,LSU ribosomal DNA ,Sponge spicule ,lcsh:Biology (General) ,morphology ,description ,Taxonomy (biology) ,maximum likelihood ,lcsh:QH301-705.5 ,Sectonema caobangense ,Ribosomal DNA ,Phylogenetic relationship - Abstract
Sectonema caobangense sp. n. from evergreen forest soil in Vietnam is described, including scanning electron micrograph (SEM) observations and D2-D3 LSU rDNA analysis. The new species is characterized by its 3.12 to 5.80 mm long body, lip region offset by deep constriction and 21 to 23 μm broad, mural tooth 13 to 14 μm long at its ventral side, 940 to 1,112 μm long neck, pharyngeal expansion occupying 61% to 69% of total neck length, uterus a long simple tube-like structure 292 to 363 μm long or 2.7 to 2.9 times the corresponding body diameter, pars refringens vaginae well developed, V = 48 to 56, short (36-51 μm, c = 77-132, c’ = 0.5-0.8) and rounded tail, 87 to 99 μm long spicules, and four or five irregularly spaced ventromedian supplements bearing hiatus. Sectonema caobangense sp. n. differs from the typical pattern of Sectonema in the nature of the stomatal protrusible structure, bearing a mural tooth attached to the ventral side of the stoma. Molecular data obtained and the derived evolutionary trees support a close phylogenetic relationship with other Sectonema species.
- Published
- 2016
- Full Text
- View/download PDF
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