9 results on '"Çevik, Özge"'
Search Results
2. Design, synthesis, molecular modeling, in vitro evaluation of novel piperidine‐containing hydrazone derivatives as cholinesterase inhibitors.
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Tok, Fatih, Baltaş, Nimet, Abas, Burçin İrem, Tatar Yılmaz, Gizem, Kaya, Süleyman, Koçyiğit‐Kaymakçıoğlu, Bedia, and Çevik, Özge
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MOLECULAR dynamics ,ALZHEIMER'S disease ,HYDRAZONE derivatives ,MOLECULAR docking ,STRUCTURAL stability ,CHOLINESTERASE inhibitors - Abstract
In an effort to develop new and effective therapeutic agents for Alzheimer's disease, a series of hydrazone derivatives bearing piperidine rings have been designed and synthesized. The chemical structures of the compounds were characterized by various spectroscopic techniques. In vitro antioxidant and cholinesterase activities of the compounds were evaluated. Among the compounds, N12 exhibited the most antioxidant activity in all methods (CUPRAC, FRAP, DPPH, ABTS). In vitro acetylcholinesterase (AChE) activity results of the compounds showed good IC50 values between 14.124 ± 0.084 and 49.680 ± 0.110 µM were obtained (IC50 = 38.842 ± 0.053 µM for Donepezil). Among the compounds, N7 and N6 are much more effective derivatives than the standard compound donepezil with IC50 values of 14.124 ± 0.084 and 17.968 ± 0.072 µM, respectively. In vitro, butyrylcholinesterase (BChE) inhibition values of the compounds were between 13.505 ± 0.025 and 52.230 ± 0.027 μm. Among the compounds, N6 has the highest BChE inhibition with an IC50 value of 13.505 μm in the series. The cytotoxicity and AChE inhibitory activity of the compounds on SH‐SY5Y cell lines were also evaluated. Kinetic studies were also performed to determine the behavior of the compounds as competitive or noncompetitive inhibitors. The binding modes of N6, which was determined to be highly effective according to in vitro analyses, with AChE and BChE were investigated using molecular docking studies, and the stability of the complexes was determined by molecular dynamics simulations. These findings indicated that AChE and BChE enzymes maintained their overall structural stability and compactness during interactions with compound N6. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Synthesis, molecular docking and evaluation of novel sulfonyl hydrazones as anticancer agents and COX-2 inhibitors
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Şenkardeş, Sevil, Han, M. İhsan, Kulabaş, Necla, Abbak, Mürüvvet, Çevik, Özge, Küçükgüzel, İlkay, and Küçükgüzel, Ş. Güniz
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- 2020
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4. Piperazin incorporated Schiff Base derivatives: Assessment of in vitro biological activities, metabolic enzyme inhibition properties, and molecular docking calculations.
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Mermer, Arif, Tüzün, Burak, Daştan, Sevgi Durna, Koçyiğit, Ümit M., Çetin, Feyza Nur, and Çevik, Özge
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SCHIFF base derivatives ,MOLECULAR docking ,CARBONIC anhydrase ,ENZYMES ,TERTIARY structure ,BENZENESULFONAMIDES - Abstract
The cytotoxic activities of the compounds were determined by the 3‐(4,5‐dimethylthiazolyl‐2)‐2,5‐diphenyltetrazolium bromide (MTT) method in human breast cancer (MCF‐7), human cervical cancer (HeLa), and mouse fibroblast (L929) cell lines. The compounds MAAS‐5 and four modified the supercoiled tertiary structure of pBR322 plasmid DNA. MAAS‐5 showed the highest cytotoxic activity in HeLa, MCF‐7, and L929 cells with IC50 values of 16.76 ± 3.22, 28.83 ± 5.61, and 2.18 ± 1.22 µM, respectively. MAAS‐3 was found to have almost the lowest cytotoxic activities with the IC50 values of 93.17 ± 9.28, 181.07 ± 11.54, and 16.86 ± 6.42 µM in HeLa, MCF‐7, and L929 cells respectively at 24 h. Moreover, the antiepileptic potentials of these compounds were investigated in this study. To this end, the effect of newly synthesized Schiff base derivatives on the enzyme activities of carbonic anhydrase I and II isozymes (human carbonic anhydrase [hCA] I and hCA II) was evaluated spectrophotometrically. The target compounds demonstrated high inhibitory activities compared with standard inhibitors with Ki values in the range of 4.54 ± 0.86–15.46 ± 8.65 nM for hCA I (Ki value for standard inhibitor = 12.08 ± 2.00 nM), 1.09 ± 0.32–29.94 ± 0.82 nM for hCA II (Ki value for standard inhibitor = 18.22 ± 4.90 nM). Finally, the activities of the compounds were compared with the Gaussian programme in the B3lyp, HF, M062X base sets with 6‐31++G (d,p) levels. In addition, the activities of five compounds against various breast cancer proteins and hCA I and II were compared with molecular docking calculations. Also, absorption, distribution, metabolism, excretion, and toxicity analysis was performed to investigate the possibility of using five compounds as drug candidates. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Synthesis and Apoptotic Effects of DNMT Inhibition Targeted Novel Hybrid Molecules Bearing Thiadiazole and Clopidogrel for Cancer Treatment.
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Karakuş, Sevgi, Usta, Mert, Tok, Fatih, Erdoğan, Ömer, Şentürk, Mesut, Çevik, Özge, and Koçyiğit-Kaymakçıoğlu, Bedia
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CLOPIDOGREL , *ANNEXINS , *DRUG standards , *CANCER cells , *MOLECULAR docking - Abstract
AbstractDespite the efforts to treat cancer with chemotherapeutic agents targeting different mechanisms, cancer is still one of the most important health problems today. The increase in cancer incidence has led researchers to discover new, effective, and selective molecules. For this purpose, novel thiosemicarbazide (
3a–3i ) and 1,3,4-thiadiazole derivatives (4a–4i ) were synthesized from clopidogrel bisulfate and their cytotoxic activities were investigated against glioblastoma (U87) cell line and healthy fibroblast (L929) cell line by MTT assay. Among the synthesized compounds;3b ,3g ,4b ,4d, and4i exhibited higher cytotoxic activities than the standard drug paclitaxel against U87 cancer cells. Cell apoptosis was detected by Bax, Bcl-2, caspase-3 activity, and Annexin V assay. The results displayed that compounds3b ,3g ,4b ,4d, and4i induced apoptosis in U87 cells. Moreover, all compounds were investigated for DNA methyltransferase (DNMT) activity in U87 cells. DNMT enzyme activity was decreased in these compounds’ treated cells. Cyclohexyl ring-bearing compound4d , which showed the highest activity against U87 cells, was the most potent inhibitor of DNMT with an IC50 value of 5.78 ± 1.07 µM compared to paclitaxel (82.05 ± 4.67 µM). Molecular docking studies were also performed to identify the interactions between the compounds and the active sites of DNMT. [ABSTRACT FROM AUTHOR]- Published
- 2025
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6. Exploring etofenamate hydrazide-hydrazone/copper(II) complexes: Synthesis, anticancer activity, carbonic anhydrase IX inhibition and docking studies.
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Saral Çakmak, Sude, Erdoğan, Ömer, Başoğlu, Faika, Çoruh, Ufuk, Çevik, Özge, and Karakuş, Sevgi
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HYDRAZONE derivatives , *CARBONIC anhydrase , *MOLECULAR docking , *ANTINEOPLASTIC agents , *BCL-2 genes , *X-ray crystallography - Abstract
• New etofenamate hydrazide-hydrazone derivatives and copper(II) complexes were designed, synthesized and characterized. • Compounds 2e and 3s exhibited a strong toxicity against the ISHW cell line. • Compound 2a and 3s exhibited significant inhibitory activity against carbonic anhydrase IX. • Molecular docking study reported against CA IX. Hydrazide-hydrazone derivatives have garnered significant interest from researchers globally due to their wide range of biological activities, including antiviral, anticancer, and anti-inflammatory properties. In this study, a novel series of etofenamate hydrazide-hydrazone compounds (2a-2s) and their Cu(II) complexes (3a-3s) were designed and synthesized. The compounds were characterized using various analytical techniques such as FT-IR, 1H NMR, 13C NMR, MS, and elemental analysis. Additionally, the compound 2c and Cu(II) hydrazone complex 3a were further characterized using single X-ray crystallography. The anti-proliferative activity of the compounds was evaluated against Ishikawa human endometrial cancer cell line and non-tumour L929 cells using MTT assay. Additionally, the apoptotic potential of the compounds was investigated through caspase-3 activity, Bax and Bcl-2 gene expression analysis, and annexin-V binding. Furthermore, carbonic anhydrase IX activity and in silico studies were conducted to elucidate the mechanism of action. Overall, compound 3s demonstrated significant antiproliferative effects with an IC 50 value of 0.27±0.01 µM against Ishikawa cells. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2024
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7. Synthesis, cytotoxic activities and molecular modeling studies of some 2-aminonaphtho[2,3-d][1,3]thiazole-4,9-dione derivatives.
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Yanık, Hülya, Ayan, Sümeyra, Akdemir, Atilla, Erdoğan, Ömer, Üstündağ, Cem Bülent, Çevik, Özge, and Yılmaz, Özgür
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MOLECULAR models , *HELA cells , *CHEMICAL synthesis , *MOLECULAR docking , *CELL proliferation , *QUINONE derivatives - Abstract
Quinones, especially 1,4-naphthoquinones, are one of the most significant and widely distributed phytochemical groups in nature. 1,4-Naphthoquinones and their synthetic derivatives are found to possess remarkable cytotoxic activities. In this study, a series of 2-aminonaphtho[2,3-d][1,3]thiazole-4,9-dione derivatives were synthesized and their structures were verified with spectral analysis. In vitro cytotoxic activities of the synthesized compounds were evaluated by using MTT assay against MKN-45 (Human Gastric cancer), MDA-MB-231 (Human Breast cancer) and HeLa (Human Cervical cancer) cell lines. Among the synthesized compounds, 3d inhibited MDA-MB-cell proliferation with an IC50 value of 0.276 μM. Compound 3a inhibited HeLa and MKN-45 cell proliferation with IC50 values of 0.336 μM and 8.769 μM, respectively. Compound 3b inhibited HELA cell proliferation with an IC50 value of 0.269 μM. Molecular docking results suggest that the ligands may bind to the hDNA TopoIIβ binding pocket and partially exert their effects. These results propose that 2-aminonaphtho[2,3-d]thiazole-4,9-dion core has important biological effects and further explorations are worthwhile. [ABSTRACT FROM AUTHOR]
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- 2020
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8. Synthesis of novel Cu(II) complexes with N2O2 ligands: Characterization, theoretical calculations, antimicrobial, antioxidant, DNA binding, and in vitro anticancer activity studies.
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Mermer, Arif, Tüzün, Burak, Daştan, Sevgi Durna, and Çevik, Özge
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COPPER , *ANTINEOPLASTIC agents , *PROTEIN-ligand interactions , *DNA , *COMPLEX compounds - Abstract
Synthesis of novel Cu(II) complexes with N2O2 ligands: Characterization, molecular docking and DFT calculations, antimicrobial, antioxidant, DNA binding, and in vitro anticancer activity studies. [Display omitted] The aim was to investigate the in vitro antimicrobial, antioxidant, cytotoxic activities and pBR322 Plasmid DNA interaction potentials of newly synthesized Schiff bases and their copper complexes. Cytotoxic activities of these compounds were determined by MTT methods in human breast cancer (MCF-7), human cervical cancer (HeLa) and mouse fibroblast (L929) cell lines. The determination of changes in oxidant and antioxidant load of the cell after application of these compounds were investigated with the aid of Rel Assay Diagnostics kits. It was found that the some of the compounds had moderate antimicrobial activity, and oxidative stress index. According to plasmid DNA interaction studies, synthesized complexes modified the tertiary structure of pBR322 plasmid DNA. The compound Bis-Napht showed the highest cytotoxic activity in HeLa, MCF-7 and L929 cells at an IC50 dose of 3 ± 1 µM, 5 ± 1 µM and 3 ± 1 µM respectively. Compound Bis-Sal was determined to have lower cytotoxic activity in L-929 cells at an IC50 dose of 106 ± 9 µM at 24 h compared to other compounds. Ligand compounds and their metal complexes were optimized on the B3LYP, HF, and M06-2x methods with the 6–31++g(d,p) basis set. Afterwards, their activities were compared against crystal structure of the BRCT repeat region from the breast cancer associated protein, (BRCA1) (PDB ID: 1JNX) and crystal Structure of CDK2 receptor of cervical cancer cell proteins (PDB ID: 4BGH). To examine the interactions occurring in more detail, Protein-Ligand Interaction Profiler analysis was performed and all chemical interactions that occurred were determined. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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9. Novel 2,6-disubstituted pyridine hydrazones: Synthesis, anticancer activity, docking studies and effects on caspase-3-mediated apoptosis.
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Şenkardeş, Sevil, Türe, Aslı, Ekrek, Sedanur, Durak, Asım Tuğrul, Abbak, Mürüvvet, Çevik, Özge, Kaşkatepe, Banu, Küçükgüzel, İlkay, and Güniz Küçükgüzel, Ş
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HYDRAZONE derivatives , *APOPTOSIS , *HYDRAZONES , *MOLECULAR docking , *CANCER cells , *CELL lines - Abstract
• New 2,6-disubstituted pyridine hydrazone derivatives were synthesized and evaluated for anticancer activity. • 3f and 3k showed remarkable cytotoxic activity against HT-29 with IC 50 value of 6.78 and 8.88 µM, respectively. • Also, 3g showed the best cytotoxic activity against ISH with IC 50 value of 8.26 µM. • 3f, 3g and 3k caused morphological changes of tumor cells and induced apoptosis. • Molecular docking was performed into BRAF kinase binding site. Novel pyridine-based dihydrazones (3a-l) were synthesized by the condensation of appropriate aldehydes and pyridine-2,6-dicarbohydrazide (2) which was obtained by the treatment of dimethyl pyridine-2,6-dicarboxylate (1) with hydrazine hydrate. Structures of all the synthesized compounds were supported by their FTIR, 1H NMR, 13C NMR and microanalytical data. The compounds were screened primarily for their antibacterial activities as well as anticancer activities. None of the synthesized compounds had important antibacterial activity. Among the compounds which were tested against human colon cancer cell line (HT-29), compounds 3f and 3k showed significant activity (IC 50 =6.78 μM for compound 3f , IC 50 =8.88 μM for compound 3k). In addition, compound 3g exhibited promising activity against Ishikawa human endometrial cancer cell line (ISH) with an IC 50 value of 8.26 μM. At 10 μM, compounds 3f, 3k and 3g caused morphological changes of HT-29 and ISH cells and caspase-3 activation. In addition, these compounds were evaluated against NIH 3T3 mouse embriyonic fibroblast cell line and all synthesized compounds (3a-l) were found to be less toxic than paclitaxel. Moreover, possible inhibition mechanism of compound 3g was evaluated in silico against BRAF kinase enzyme. Image, graphical abstract [ABSTRACT FROM AUTHOR]
- Published
- 2021
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