1. Deep sequencing of the transcriptome in the anterior pituitary of heifers before and after ovulation
- Author
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Hiroya Kadokawa, Yoichi Mizukami, Syuiti Sakaguti, Kenji Watanabe, and Kiran Pandey
- Subjects
Ovulation ,0301 basic medicine ,G-protein-coupled receptor ,media_common.quotation_subject ,Receptors, Cell Surface ,RNA-Seq ,ruminant ,Biology ,Real-Time Polymerase Chain Reaction ,Deep sequencing ,Transcriptome ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Anterior pituitary ,Pituitary Gland, Anterior ,Gene expression ,medicine ,Animals ,Gene Regulatory Networks ,Gene ,media_common ,Rho family GTPase ,Full Paper ,General Veterinary ,Sequence Analysis, RNA ,High-Throughput Nucleotide Sequencing ,Molecular Sequence Annotation ,Molecular biology ,030104 developmental biology ,medicine.anatomical_structure ,Cattle ,Female ,Theriogenology ,RNA-seq ,Software ,030217 neurology & neurosurgery - Abstract
We aimed to determine gene expression patterns in the anterior pituitary (AP) of heifers before and after ovulation via deep sequencing of the transcriptome (RNA-seq) to identify new genes and clarify important pathways. Heifers were slaughtered on the estrus day (pre-ovulation; n=5) or 3 days after ovulation (post-ovulation; n=5) for AP collection. We randomly selected 4 pre-ovulation and 4 post-ovulation APs, and the ribosomal RNA-depleted poly (A)+RNA were prepared to assemble next-generation sequencing libraries. The bovine APs expressed 12,769 annotated genes at pre- or post-ovulation. The sum of the reads per kilobase of exon model per million mapped reads (RPKM) values of all transcriptomes were 599,676 ± 38,913 and 668,209 ± 23,690, and 32.2 ± 2.6% and 44.0 ± 4.4% of these corresponded to the AP hormones in the APs of pre- and post-ovulation heifers, respectively. The bovine AP showed differential expression of 396 genes (P
- Published
- 2017