1. Revealing mitogenome-wide DNA methylation and RNA editing of three Ascomycotina fungi using SMRT sequencing
- Author
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Chaoxia Wang, Zhang Yaozhou, Li Liu, Zhang Shujun, Wu Yuqian, Du Simiao, Chen Yujiao, Li Dongmei, and Feng Jianhua
- Subjects
0301 basic medicine ,Acclimatization ,Ophiocordyceps sinensis ,Bassiana ,Deep sequencing ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cordyceps militaris ,Beauveria ,Medicine, Chinese Traditional ,Molecular Biology ,Genetics ,biology ,Gene Expression Profiling ,Genetic Variation ,Cell Biology ,DNA Methylation ,biology.organism_classification ,030104 developmental biology ,chemistry ,RNA editing ,DNA methylation ,Cordyceps ,Genome, Mitochondrial ,Molecular Medicine ,RNA Editing ,Transcriptome ,030217 neurology & neurosurgery ,DNA ,Single molecule real time sequencing - Abstract
Beauveria bassiana, Cordyceps militaris and Ophiocordyceps sinensis (Ascomycotina) are traditional Chinese medicines. Here, mitogenomes of these three Ascomycotina fungi were sequenced and de-novo assembled using single-molecule real-time sequencing. The results showed that their complete mitogenomes were 31,258, 31,854 and 157,584 bp, respectively, with sequencing depth approximately 278,760×, 326,283× and 69,385×. Types of repeat sequences were mainly (AA)n, (AAT)n, (TA)n and (TATT)n. DNA methylation motifs were revealed in DNA modifications of these three fungi. We discovered new models of RNA editing through analysis of transcriptomes from B. bassiana and C. militaris. These data lay a solid foundation for further genetic and biological studies about these three fungi, especially for elucidating the mitogenome evolution and exploring the regulatory mechanism of adapting environment.
- Published
- 2018