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The FERMI@Elettra free electron laser (FEL) user facility is under construction at Sincrotrone Trieste (Italy), and it will be operative in late 2010. It is based on a seeded scheme providing an almost perfect transform-limited and fully spatially coherent photon beam. FERMI@Elettra will cover the wavelength range 100 to 3 nm with the fundamental harmonics, and down to 1 nm with higher harmonics. We present the layout of the photon beam transport system that includes: the first common part providing on-line and shot-to-shot beam diagnostics, called PADReS (Photon Analysis Delivery and Reduction System), and 3 independent beamlines feeding the experimental stations. Particular emphasis is given to the solutions adopted to preserve the wavefront, and to avoid damage on the different optical elements. Peculiar FEL devices, not common in the Synchrotron Radiation facilities, are described in more detail, e.g. the online photon energy spectrometer measuring shot-by-shot the spectrum of the emitted radiation, the beam splitting and delay line system dedicated to cross/auto correlation and pump-probe experiments, and the wavefront preserving active optics adapting the shape and size of the focused spot to meet the needs of the different experiments. [ABSTRACT FROM AUTHOR]