48 results on '"Geomyces"'
Search Results
2. Widespread Bat White-Nose Syndrome Fungus, Northeastern China
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Hoyt, Joseph R, Sun, Keping, Parise, Katy L, Lu, Guanjun, Langwig, Kate E, Jiang, Tinglei, Yang, Shubao, Frick, Winifred F, Kilpatrick, A Marm, Foster, Jeffrey T, and Feng, Jiang
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Biomedical and Clinical Sciences ,Epidemiology ,Health Services and Systems ,Clinical Sciences ,Health Sciences ,Animals ,China ,Chiroptera ,Fungi ,Mycoses ,Nose ,Asia ,Geomyces ,Pseudogymnoascus destructans ,bats ,fungal disease ,fungi ,species distribution ,white-nose syndrome ,Medical Microbiology ,Public Health and Health Services ,Microbiology ,Clinical sciences ,Health services and systems - Published
- 2015
3. The Enigmatic Thelebolaceae (Thelebolales, Leotiomycetes): One New Genus Solomyces and Five New Species
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Zhiyuan Zhang, Chunbo Dong, Wanhao Chen, Quanrong Mou, Xiaoxiao Lu, Yanfeng Han, Jianzhong Huang, and Zongqi Liang
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Microbiology (medical) ,Leotiomycetes ,Pseudogymnoascus ,food.ingredient ,lcsh:QR1-502 ,phylogeny ,Microbiology ,lcsh:Microbiology ,taxonomy ,03 medical and health sciences ,food ,Geomyces ,Phylogenetics ,Genus ,030304 developmental biology ,new species ,0303 health sciences ,biology ,Phylogenetic tree ,030306 microbiology ,new genus ,biology.organism_classification ,Evolutionary biology ,Thelebolales ,Taxonomy (biology) - Abstract
The family Thelebolaceae belongs to the order Thelebolales, class Leotiomycetes, and contains 22 genera. In this study, we introduce a new genus Solomyces gen. nov. in the family Thelebolaceae, which is supported by morphological observation and multilocus-based [internal transcribed spacers (ITS) + LSU and ITS + LSU+ MCM7+ EF1A+ RPB2] phylogenetic analysis. Maximum-likelihood and Bayesian phylogenetic inference analyses indicated that Solomyces is a distinct genus within this family. The new genus is compared against related Thelebolaceae genera, and its description and illustration are provided. This genus comprises one new species and one unnamed species (including two strains). We also report the addition of four new species – Pseudogymnoascus shaanxiensis, Pseudogymnoascus guizhouensis, Pseudogymnoascus sinensis, and Geomyces obovatus – in the family Thelebolaceae and present their morphological and phylogenetic characterizations.
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- 2020
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4. Shifts in bacterial and fungal diversity in a paddy soil faced with phosphorus surplus
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Chunyu Jiang, Jia Liu, Ming Liu, Zhongpei Li, Xiaofen Chen, and Meng Wu
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0301 basic medicine ,Trichocomaceae ,biology ,Phosphorus ,Soil Science ,chemistry.chemical_element ,04 agricultural and veterinary sciences ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,Geomyces ,Agronomy ,chemistry ,Canonical correspondence analysis ,Indicator species ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Species richness ,Red soil ,Agronomy and Crop Science - Abstract
Abundant phosphorus (P) has been applied to paddy fields in the red soil region of subtropical China. Microbial communities play important roles in soil nutrient cycling; however, the effects of P surplus on soil microbial diversity and community composition are still unclear. Soils collected from paddy fields in subtropical China was incubated and subjected to four P treatments: 33 kg ha−1 (CK), 66 kg ha−1 (P1), 132 kg ha−1 (P2), and 264 kg ha−1 (P3). Changes in bacterial and fungal diversity and community composition were evaluated by high-throughput sequencing. The different P rates had no significant effect on bacterial diversity, whereas fungal richness and diversity indexes declined significantly by increasing P rates. Principle coordinate analysis (PCoA) also indicated a shift in fungal community composition when P rates were higher than 132 kg ha−1. Available P (AP) was the dominant factor affecting fungal community composition as evaluated by canonical correspondence analysis (CCA). Multivariate regression trees (MRT) revealed that the key threshold of 53.6 mg kg−1 of AP divided treatments into two distinct groups. Linear discriminant analysis effect size (LEfSe) showed that abundances of Pseudogymnoascus and Geomyces increased, but those of Penicillium and an unknown genus of Trichocomaceae decreased when AP was ≥ 53.6 mg kg−1.
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- 2017
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5. Keratinolytic and Opportunistic Pathogenic Fungi from Carpet Dust in Mosques and Residentialhouses in Duhok, Kurdistan Region, Iraq
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Hend Abdulsalam Hussein and Samir K. Abdullah
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Aspergillus ,Neoscytalidium ,Arthrographis ,biology ,Ocean Engineering ,Gymnoascus ,carpet dust ,biology.organism_classification ,Microbiology ,Geomyces ,opportunistic pathogens ,Microascus ,Iraq ,Scopulariopsis ,Botany ,lcsh:Q ,Keratinolytic fungi ,lcsh:Science ,Mycelium - Abstract
One hundred samples of carpet dusts (50 samples from residential houses and 50 samples from mosques) were collected from different sites in Duhok province during the year 2014 to 2015 for the objective of the study of the occurrence of keratinolytic and other potentially pathogenic fungi using hair baiting method. A total of 24 fungal species (17 species from house dust) and (12 species from mosque dust) in addition to non-sporulating mycelia and yeasts were isolated and identified. The keratinolytic species Arthroderma cuniculi, Chrysosporium tropicum and Gymnoascus ressii were detected. Potentially pathogenic fungi in the genera Aspergillus, Arthrographis,Geomyces, Microascus,Scopulariopsis and Neoscytalidium were also able to colonize and grow on baited hairs.
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- 2017
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6. Keratinophilic fungi: Specialized fungal communities in a desert ecosystem identified using cultured-based and Illumina sequencing approaches
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Rebecca C. Mueller, Cheryl R. Kuske, Andrea Porras-Alfaro, and Paris S. Hamm
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Hypocreales ,Colony Count, Microbial ,Eurotiales ,Microbiology ,03 medical and health sciences ,Geomyces ,Botany ,Sordariales ,Pleosporales ,Illumina dye sequencing ,Ecosystem ,Phylogeny ,Soil Microbiology ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,fungi ,Fungi ,food and beverages ,High-Throughput Nucleotide Sequencing ,Biodiversity ,Chaetomium ,biology.organism_classification ,Alternaria ,Rhizosphere ,Keratins ,Seasons ,Desert Climate ,Mycobiome - Abstract
Soil fungi in desert ecosystems are adapted to harsh environmental conditions such as high soil surface temperatures and limited organic matter and water. Given limited carbon inputs from plant material, heterotrophic fungi likely use unconventional sources of carbon in these systems. A baiting method was used to culture keratinophilic fungi from biocrust and rhizosphere soils in an arid grassland in Utah, USA. Fungi were baited using llama and sheep wool, horsehair, and snakeskin on two media, and pure cultures were identified using ITS and LSU rRNA sequences. One hundred-eighteen fungal colonies were grown, representing a total of 32 Operational Taxonomic Units (OTUs) at 97 % similarity. Cultures were dominated by the phylum Ascomycota (88 %) followed by Mucoromycota (8.6 %) and Basidiomycota (3.4 %). The orders Pleosporales, Eurotiales, Hypocreales, and Sordariales were commonly isolated, with the dominant taxa Alternaria (27 %), Aspergillus (22 %), Fusarium (11 %), and Chaetomium (8%). Thirty percent of the fungi isolated have the capacity to degrade keratin in vitro using a keratin azure assay, with Penicillium showing the highest degradation followed by Geomyces, Alternaria, and Fusarium. Although keratin degraders can be infectious, dermatophytes associated with skin infections were not isolated in culture or detected in Illumina sequencing. Illumina sequencing was used to determine general patterns in seasonal variation and habitat preference of keratinophiles. Alternaria was the most abundant genus with >70 % of the sequences. The combination of Illumina data with culture-dependent approaches facilitated the characterization of a specialized community and confirmed the low abundance of dermatophytes in this arid site.
- Published
- 2020
7. 3-Nitroasterric Acid Derivatives from an Antarctic Sponge-Derived Pseudogymnoascus sp. Fungus
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Inmaculada Vaca, Renato Chávez, Carlos Jiménez, Mercedes de la Cruz, Yuri Segade, Caridad Díaz, Carlos Areche, Marlene Henríquez, Jaime Rodríguez, and Luis Figueroa
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Hymeniacidon ,Antifungal Agents ,Antarctic Regions ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Fungus ,Analytical Chemistry ,Microbiology ,chemistry.chemical_compound ,Geomyces ,Ascomycota ,Drug Discovery ,Animals ,Nuclear Magnetic Resonance, Biomolecular ,Asterric acid ,Pharmacology ,Molecular Structure ,biology ,Phenyl Ethers ,Organic Chemistry ,Nitro Compounds ,biology.organism_classification ,Anti-Bacterial Agents ,Porifera ,Sponge ,Complementary and alternative medicine ,chemistry ,Nitro ,Molecular Medicine ,Bacteria ,Pseudogymnoascus sp - Abstract
Four new nitroasterric acid derivatives, pseudogymnoascins A-C (1-3) and 3-nitroasterric acid (4), along with the two known compounds questin and pyriculamide, were obtained from the cultures of a Pseudogymnoascus sp. fungus isolated from an Antarctic marine sponge belonging to the genus Hymeniacidon. The structures of the new compounds were determined by extensive NMR and MS analyses. These compounds are the first nitro derivatives of the known fungal metabolite asterric acid. Several asterric acid derivatives isolated from other fungal strains have shown antibacterial and antifungal activities. However, the new compounds described in this work were inactive against a panel of bacteria and fungi (MIC > 64 μg/mL).
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- 2015
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8. Fungal pathogenesis: Past, present and future
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Sarah J. Gurr and Claire Taylor
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Wild species ,education.field_of_study ,biology ,Mechanism (biology) ,Ecology ,Population ,Disease ,biology.organism_classification ,Research findings ,Microbiology ,Geomyces ,education ,Cryptococcus gattii ,Fungal pathogenesis - Abstract
Over the last 20 years a record number of fungal and fungal-like diseases have jeopardized wild species the world over, causing several of the most severe population declines and extinctions ever witnessed ( Fisher et al. 2012 ). Such events include the devastating impact of Batrachochytrium dendrobatidis on amphibian populations and the extinction of bat populations as a result of Geomyces destructans infection. This commentary focusses on two human-infecting fungal pathogens causing much scientific interest, that is, Cryptococcus gattii and Trichophyton rubrum . It summarises recent research findings into their pathogenic evolution and adaptive strategies and highlights key gaps in our knowledge. Finally, the prose attempts to fuse such data with the work of Casadevall, exploiting his theories to predict the future of fungal pathogenesis, that is, where pathogenesis refers to the mechanism that results in disease ( Casadevall 2012 ).
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- 2014
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9. Highly Sensitive Quantitative PCR for the Detection and Differentiation of Pseudogymnoascus destructans and Other Pseudogymnoascus Species
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Jeffrey T. Foster, Megan M Shuey, Kevin P. Drees, Paul Keim, and Daniel L. Lindner
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Pseudogymnoascus ,food.ingredient ,Mycology ,Real-Time Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Sensitivity and Specificity ,Applied Microbiology and Biotechnology ,Microbiology ,Geomyces ,food ,Ascomycota ,Microbial ecology ,Pseudogymnoascus destructans ,Environmental Microbiology ,Methods ,DNA, Fungal ,Ecology ,biology ,Fungal genetics ,biology.organism_classification ,Real-time polymerase chain reaction ,North America ,Oligonucleotide Probes ,Food Science ,Biotechnology - Abstract
White-nose syndrome is a fungal disease that has decimated bat populations across eastern North America. Identification of the etiologic agent, Pseudogymnoascus destructans (formerly Geomyces destructans ), in environmental samples is essential to proposed management plans. A major challenge is the presence of closely related species, which are ubiquitous in many soils and cave sediments and often present in high abundance. We present a dual-probe real-time quantitative PCR assay capable of detecting and differentiating P. destructans from closely related fungi in environmental samples from North America. The assay, based on a single nucleotide polymorphism (SNP) specific to P. destructans , is capable of rapid low-level detection from various sampling media, including sediment, fecal samples, wing biopsy specimens, and skin swabs. This method is a highly sensitive, high-throughput method for identifying P. destructans , other Pseudogymnoascus spp., and Geomyces spp. in the environment, providing a fundamental component of research and risk assessment for addressing this disease, as well as other ecological and mycological work on related fungi.
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- 2014
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10. Cold adaptation of fungi obtained from soil and lake sediment in the Skarvsnes ice-free area, Antarctica
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Yuichi Hanada, Seiichi Fujiu, Tamotsu Hoshino, Masaharu Tsuji, Sakae Tsuda, Hidemasa Kondo, Nan Xiao, and Sakae Kudoh
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Geologic Sediments ,Leucosporidium ,Basidiomycota ,Cold-Shock Response ,Dioszegia ,Antarctic Regions ,Fungus ,Biology ,Rhodotorula ,biology.organism_classification ,Adaptation, Physiological ,Microbiology ,Cold Temperature ,Geomyces ,Ascomycota ,Genus ,Botany ,Genetics ,Phoma ,DNA, Fungal ,Molecular Biology ,Soil Microbiology - Abstract
A total of 71 isolates were collected from lake sediment and soil surrounding lakes in the Skarvsnes area, Antarctica. Based on ITS region sequence similarity, these isolates were classified to 10 genera. Twenty-three isolates were categorized as ascomycetous fungi from five genera ( Embellisia, Phoma, Geomyces, Tetracladium or Thelebolus ) and 48 isolates were categorized as basidiomycetous fungi in five genera ( Mrakia, Cryptococcus, Dioszegia, Rhodotorula or Leucosporidium ). Thirty-five percent of culturable fungi were of the genus Mrakia . Eighteen isolates from eight genera were selected and tested for both antifreeze activity and capacity for growth under temperatures ranging from −1 to 25 °C. Rhodotorula sp. NHT-2 possessed a high degree of sequence homology with R. gracialis , while Leucosporidium sp. BSS-1 possessed a high degree of sequence homology with Leu. antarcticum ( Glaciozyma antarctica ), and these two isolates demonstrated antifreeze activity. All isolates examined were capable of growth at −1 °C. Mrakia spp., while capable of growth at −1 °C, did not demonstrate any antifreeze activity and exhibited only limited secretion of extracellular polysaccharides. Species of the genus Mrakia possessed high amounts of unsaturated fatty acids, suggesting that members of this genus have adapted to cold environments by increasing their membrane fluidity.
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- 2013
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11. Diverse Deep-Sea Fungi from the South China Sea and Their Antimicrobial Activity
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Yun Zhang, Xin-Ya Xu, Xiao-Yong Zhang, and Shu-Hua Qi
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China ,Geologic Sediments ,Geography ,Acremonium ,Ajellomyces ,Molecular Sequence Data ,Arthrinium ,Fungi ,Xylaria ,Biodiversity ,General Medicine ,Biology ,Antimicrobial ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Geomyces ,Antibiosis ,DNA, Ribosomal Spacer ,Botany ,Penicillium ,Seawater ,Phylogeny ,Cladosporium - Abstract
We investigated the diversity of fungal communities in nine different deep-sea sediment samples of the South China Sea by culture-dependent methods followed by analysis of fungal internal transcribed spacer (ITS) sequences. Although 14 out of 27 identified species were reported in a previous study, 13 species were isolated from sediments of deep-sea environments for the first report. Moreover, these ITS sequences of six isolates shared 84-92 % similarity with their closest matches in GenBank, which suggested that they might be novel phylotypes of genera Ajellomyces, Podosordaria, Torula, and Xylaria. The antimicrobial activities of these fungal isolates were explored using a double-layer technique. A relatively high proportion (56 %) of fungal isolates exhibited antimicrobial activity against at least one pathogenic bacterium or fungus among four marine pathogenic microbes (Micrococcus luteus, Pseudoaltermonas piscida, Aspergerillus versicolor, and A. sydowii). Out of these antimicrobial fungi, the genera Arthrinium, Aspergillus, and Penicillium exhibited antibacterial and antifungal activities, while genus Aureobasidium displayed only antibacterial activity, and genera Acremonium, Cladosporium, Geomyces, and Phaeosphaeriopsis displayed only antifungal activity. To our knowledge, this is the first report to investigate the diversity and antimicrobial activity of culturable deep-sea-derived fungi in the South China Sea. These results suggest that diverse deep-sea fungi from the South China Sea are a potential source for antibiotics' discovery and further increase the pool of fungi available for natural bioactive product screening.
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- 2013
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12. Evaluation of Strategies for the Decontamination of Equipment for Geomyces destructans, the Causative Agent of the White-Nose Syndrome (WNS)
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Virginia Shelley, Elizabeth Ann Shelley, Kevin Keel, Samantha Kaiser, Katie Haman, Hazel A. Barton, Marcelo Kramer, and Tim Williams
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Speleologists ,Geomyces ,Emerging infectious disease ,Human decontamination ,Fungal pathogen ,Fungus ,Biology ,biology.organism_classification ,White-nose syndrome ,Pathogen ,Earth-Surface Processes ,Microbiology - Abstract
White-nose syndrome is an emerging infectious disease that has led to a dramatic decline in cave-hibernating bat species. White-nose syndrome is caused by the newly described fungal pathogen Geomyces destructans, which infects the ear, muzzle, and wing membranes of bats. Although the exact mechanism by which the fungus causes death is not yet understood, G. destructans leads to a high mortality rate in infected animals. While the primary mechanism of infection appears to be bat-to-bat transfer, it is still unclear what role human activity may play in the spread of this pathogen. Here we evaluate the effectiveness of decontamination protocols that can be utilized by speleologists to reduce the likelihood of spreading this dangerous pathogen to naive bats or uninfected hibernacula. Our results show that pre-cleaning to remove muds and/ or sediments followed by the use of commercially available disinfectants can effectively remove G. destructans from caving fabrics. Alternatively, immersion in water above 50 uC for at least 20 minutes effectively destroys the fungal spores. These results have allowed the development of a decontamination protocol (http://www.fws.gov/ WhiteNoseSyndrome/cavers.html) that, when appropriately followed, can greatly reduce the likelihood of the human mediated transfer of G. destructans from an infected to uninfected site.
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- 2013
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13. Parallels in Amphibian and Bat Declines from Pathogenic Fungi
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Evan A. Eskew and Brian D. Todd
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Disease reservoir ,Epidemiology ,Biodiversity ,virulence factors ,lcsh:Medicine ,Communicable Diseases, Emerging ,immunology ,Geomyces ,Chiroptera ,host-pathogen interactions ,innate immunity ,biodiversity ,Emerging ,0303 health sciences ,amphibians ,biology ,Ecology ,infectious disease reservoirs ,Vertebrate ,adaptive immunity ,Infectious Diseases ,Chytridiomycota ,Medical Microbiology ,species extinction ,Host-Pathogen Interactions ,Public Health and Health Services ,Synopsis ,Amphibian ,Microbiology (medical) ,Clinical Sciences ,bats ,Zoology ,Communicable Diseases ,Microbiology ,lcsh:Infectious and parasitic diseases ,Amphibians ,03 medical and health sciences ,Ascomycota ,biology.animal ,pathogenicity factors ,Animals ,lcsh:RC109-216 ,Chytridiomycosis ,030304 developmental biology ,Disease Reservoirs ,Host (biology) ,030306 microbiology ,lcsh:R ,infectious disease transmission ,15. Life on land ,infectious disease outbreak ,biology.organism_classification ,immunocompromised hosts ,Mycoses ,13. Climate action ,fungi - Abstract
Pathogenic fungi have substantial effects on global biodiversity, and 2 emerging pathogenic species—the chytridiomycete Batrachochytrium dendrobatidis, which causes chytridiomycosis in amphibians, and the ascomycete Geomyces destructans, which causes white-nose syndrome in hibernating bats—are implicated in the widespread decline of their vertebrate hosts. We synthesized current knowledge for chytridiomycosis and white-nose syndrome regarding disease emergence, environmental reservoirs, life history characteristics of the host, and host–pathogen interactions. We found striking similarities between these aspects of chytridiomycosis and white-nose syndrome, and the research that we review and propose should help guide management of future emerging fungal diseases.
- Published
- 2013
14. Indentification of vincamine indole alkaloids producing endophytic fungi isolated from Nerium indicum, Apocynaceae
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Liu Jia-jia, Liu Xiong, Luo Yitian, Peng Yingzi, Zhou Jing, Zhao Nana, Ren Na, Hong Juan, and Yang Dong-liang
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0106 biological sciences ,0301 basic medicine ,Vincamine ,Secondary Metabolism ,Secondary metabolite ,Biology ,01 natural sciences ,Microbiology ,Plant Roots ,Plant use of endophytic fungi in defense ,03 medical and health sciences ,Geomyces ,010608 biotechnology ,Botany ,DNA, Ribosomal Spacer ,medicine ,Endophytes ,Metabolomics ,Phylogeny ,Indole alkaloid ,Apocynaceae ,Tabersonine ,Fungi ,biology.organism_classification ,Thin-layer chromatography ,Biosynthetic Pathways ,030104 developmental biology ,Fermentation ,Metabolome ,medicine.drug - Abstract
Vincamine, a monoterpenoid indole alkaloid which had been marketed as nootropic drugs for the treatment of cerebral insufficiencies, is widely found in plants of the Apocynaceae family. Nerium indicum is a plant belonging to the Apocynaceae family. So, the purpose of this research was designed to investigate the vincamine alkaloids producing endophytic fungi from Nerium indicum , Apocynaceae. 11 strains of endophytic fungi, isolated from the stems and roots of the plant, were grouped into 5 genera on the basis of morphological characteristics. All fungal isolates were fermented and their extracts were preliminary screened by Dragendorff’s reagent and thin layer chromatography (TLC). One isolated strain CH1, isolated from the stems of Nerium indicum , had the same R f value (about 0.56) as authentic vincamine. The extracts of strain CH1 were further analyzed by high performance liquid chromatography (HPLC) and liquid chromatograph-mass spectrometry (LC–MS), and the results showed that the strain CH1 could produce vincamine and vincamine analogues. The acetylcholinesterase (AchE) inhibitory activity assays using Ellman’s method revealed that the metabolites of strain CH1 had significant AchE inhibitory activity with an IC 50 value of 5.16 μg/mL. The isolate CH1 was identified as Geomyces sp. based on morphological and molecular identification, and has been deposited in the China Center for Type Culture Collection (CCTCC M 2014676). This study first reported the natural compounds tabersonine and ethyl-vincamine from endophytic fungi CH1, Geomyces sp. In conclusion, the fungal endophytes from Nerium indicum can be used as alternative source for the production of vincamine and vincamine analogues.
- Published
- 2016
15. Colony-PCR Is a Rapid Method for DNA Amplification of Hyphomycetes
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Georg Walch, Maria Knapp, Georg Rainer, and Ursula Peintner
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0301 basic medicine ,Microbiology (medical) ,030106 microbiology ,yeasts ,Plant Science ,Hyphomycetes ,DNA barcoding ,DNA sequencing ,Article ,Microbiology ,fungal isolates ,03 medical and health sciences ,Geomyces ,Absidia ,soil fungi ,direct PCR ,barcoding ,reference library construction ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,biology ,biology.organism_classification ,DNA extraction ,lcsh:Biology (General) ,Variants of PCR ,Cladosporium - Abstract
Fungal pure cultures identified with both classical morphological methods and through barcoding sequences are a basic requirement for reliable reference sequences in public databases. Improved techniques for an accelerated DNA barcode reference library construction will result in considerably improved sequence databases covering a wider taxonomic range. Fast, cheap, and reliable methods for obtaining DNA sequences from fungal isolates are, therefore, a valuable tool for the scientific community. Direct colony PCR was already successfully established for yeasts, but has not been evaluated for a wide range of anamorphic soil fungi up to now, and a direct amplification protocol for hyphomycetes without tissue pre-treatment has not been published so far. Here, we present a colony PCR technique directly from fungal hyphae without previous DNA extraction or other prior manipulation. Seven hundred eighty-eight fungal strains from 48 genera were tested with a success rate of 86%. PCR success varied considerably: DNA of fungi belonging to the genera Cladosporium, Geomyces, Fusarium, and Mortierella could be amplified with high success. DNA of soil-borne yeasts was always successfully amplified. Absidia, Mucor, Trichoderma, and Penicillium isolates had noticeably lower PCR success.
- Published
- 2016
16. Pathology in euthermic bats with white nose syndrome suggests a natural manifestation of immune reconstitution inflammatory syndrome
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Carol U. Meteyer, Daniel L. Barber, and Judith N. Mandl
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Microbiology (medical) ,Hibernation ,Pathology ,medicine.medical_specialty ,Helper T lymphocyte ,Myotis lucifugus ,Immunology ,Nose ,Microbiology ,Geomyces ,Immune system ,Immune reconstitution inflammatory syndrome ,Immune Reconstitution Inflammatory Syndrome ,immune reconstitution inflammatory syndrome (IRIS) ,Pseudogymnoascus destructans ,Chiroptera ,medicine ,Animals ,Geomyces destructans ,cave-hibernating bats ,white nose syndrome ,biology ,hibernation-induced immune suppression ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,medicine.disease ,Infectious Diseases ,medicine.anatomical_structure ,Mycoses ,North America ,Perspective ,Parasitology ,immune cell trafficking - Abstract
White nose syndrome, caused by Geomyces destructans, has killed more than 5 million cave hibernating bats in eastern North America. During hibernation, the lack of inflammatory cell recruitment at the site of fungal infection and erosion is consistent with a temperature-induced inhibition of immune cell trafficking. This immune suppression allows G. destructans to colonize and erode the skin of wings, ears and muzzle of bat hosts unchecked. Yet, paradoxically, within weeks of emergence from hibernation an intense neutrophilic inflammatory response to G. destructans is generated, causing severe pathology that can contribute to death. We hypothesize that the sudden reversal of immune suppression in bats upon the return to euthermia leads to a form of immune reconstitution inflammatory syndrome (IRIS). IRIS was first described in HIV-infected humans with low helper T lymphocyte counts and bacterial or fungal opportunistic infections. IRIS is a paradoxical and rapid worsening of symptoms in immune compromised humans upon restoration of immunity in the face of an ongoing infectious process. In humans with HIV, the restoration of adaptive immunity following suppression of HIV replication with anti-retroviral therapy (ART) can trigger severe immune-mediated tissue damage that can result in death. We propose that the sudden restoration of immune responses in bats infected with G. destructans results in an IRIS-like dysregulated immune response that causes the post-emergent pathology.
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- 2012
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17. Mycological Analysis and Potential Health Hazards of Dextrose Intravenous Infusions in Nigeria
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M. O. Babalola
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Veterinary medicine ,Geomyces ,biology ,Candida krusei ,Aspergillus glaucus ,Fusarium oxysporum ,Geotrichum ,Penicillium roqueforti ,biology.organism_classification ,Candida parapsilosis ,Paecilomyces variotii ,Microbiology - Abstract
One hundred and forty two samples (142) of two brands of commercial intravenous fluids manufactured and marketed in Nigeria were analyzed for fungal contaminants. The pH and osmolarity values were also determined. All samples were analyzed within their expiry dates. The infusions were categorized into the visibly defective samples and the visibly normal samples. Sixty percent (60%) of the samples were contaminated with at least one fungal species. The fungal counts ranged from 1600cfu.ml -1 in the visibly defective sample to 50cfu.ml -1 in the visibly normal sample. Fourteen viable fungal species belonging to ten genera were isolated. The fungal isolates in the visibly defective samples were Aspergillus repens, Aspergillus glaucus, Penicillium roqueforti, Chaetomium spp, Paecilomyces variotii , Humicola grisea, Geotrichum candidum and Geomyces cretacea, while the visibly normal samples contained Aspergillus japonicus, Candida valida, Candida krusei, Candida parapsilosis, Geomyces cretacea, Paecilomyces variotii, Humicola grisea and Fusarium oxysporum. The pH and osmolarity values of contaminated samples were lower than specified for the products. (pH:4.5-5, osmolarity 280mosmol/l for 5% Dextrose infusion; pH 6 , osmolarity 555mosmol/l for 10% Dextrose infusion ) The presence of pathogenic fungi particularly in the visibly normal samples before their expiry dates , coupled with the reductions in pH and osmolarity values below the critical safe levels (pH 4, & 306 mosmol l - l ) render the two brands and two categories of products potentially hazardous to health.
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- 2012
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18. Geomyces destructans, phenotypic features of some Czech isolates
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Ondřej Koukol, Alena Nováková, and Alena Kubátová
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food.ingredient ,Ecology ,biology ,Plant Science ,Fungus ,Myotis myotis ,biology.organism_classification ,medicine.disease_cause ,Microbiology ,Geomyces ,food ,Dermatophyte ,medicine ,Agar ,Psychrophile ,Ecology, Evolution, Behavior and Systematics - Abstract
The microscopic fungus Geomyces destructans is a psychrophilic dermatophyte causing since 2006 a serious bat disease in North America called white-nose syndrome (WNS). In Europe, G. destructans has also been recorded, however less commonly and without striking lethal effects. Currently, seven isolates of G. destructans isolated from greater mouse-eared bat (Myotis myotis) from four localities are maintained in the Culture Collection of Fungi (CCF) in Prague. Growth tests at 12 and 15 °C on eight agar media demonstrated that the fungus grows somewhat faster at 12 °C than at 15 °C. Good growth was observed on nutrient rich media. No further isolates of G. destructans were recovered during screening of bat-associated environments.
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- 2011
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19. Rapid Real-Time PCR Assay for Culture and Tissue Identification of Geomyces destructans: the Etiologic Agent of Bat Geomycosis (White Nose Syndrome)
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Robert J. Rudd, Kim A. Appler, April D. Davis, Sudha Chaturvedi, Sunanda S. Rajkumar, Tanya R. Victor, Vishnu Chaturvedi, and Xiaojiang Li
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Veterinary Medicine ,medicine.medical_specialty ,Glycoside Hydrolases ,Serial dilution ,Veterinary (miscellaneous) ,Mycology ,Nose ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,Applied Microbiology and Biotechnology ,Microbiology ,Medical microbiology ,Geomyces ,Ascomycota ,Chiroptera ,medicine ,Animals ,biology ,Assay sensitivity ,Amplicon ,Myotis lucifugus ,biology.organism_classification ,Virology ,Real-time polymerase chain reaction ,Mycoses ,Agronomy and Crop Science ,Specific identification - Abstract
Geomyces destructans is the etiologic agent of bat geomycosis, commonly referred to as white nose syndrome (WNS). This infection has caused severe morbidity and mortality in little brown bats (Myotis lucifugus) and has also spread to other bat species with significant decline in the populations. Currently, G. destructans infection is identified by culture, ITS-PCR, and histopathology. We hypothesized that a real-time PCR assay would considerably improve detection of G. destructans in bats. The 100 bp sequence of the Alpha-L-Rhamnosidase gene was validated as a target for real-time PCR. The assay sensitivity was determined from serial dilution of DNA extracted from G. destructans conidia (5 × 10(-1)-5 × 10(7)), and the specificity was tested using DNA from 30 closely and distantly related fungi and 5 common bacterial pathogens. The real-time PCR assay was highly sensitive with detection limit of two G. destructans conidia per reaction at 40 PCR cycles. The assay was also highly specific as none of the other fungal or bacterial DNA cross-reacted in the real-time PCR assay. One hundred and forty-seven bat tissue samples, suspected of infection with G. destructans, were used to compare the real-time PCR assay to other methods employed for the detection of G. destructans. Real-time PCR was highly sensitive with 80 of 147 (55%) samples testing positive for G. destructans DNA. In comparison, histopathology examination revealed 64/147 (44%) positive samples. The internal transcribed spacer (ITS)-PCR yielded positive amplicon for G. destructans from 37 tissue samples (25%). The least sensitive assay was the fungal culture with only 17 tissue samples (12%) yielding G. destructans in culture. The data suggested that the real-time PCR assay is highly promising for rapid, sensitive, and specific identification of G. destructans. Further trials and inter-laboratory comparisons of this novel assay are recommended to improve the diagnosis of bat geomycosis.
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- 2011
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20. Antioxidant enzyme activity of filamentous fungi isolated from Livingston Island, Maritime Antarctica
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V. Dishliiska, Maria Angelova, Boryana Spassova, Spassen V. Vassilev, Nedelina Kostadinova, Ekaterina Krumova, Solveig Tosi, and Svetlana Pashova
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biology ,Aspergillus glaucus ,Lecanicillium muscarium ,biology.organism_classification ,Alternaria alternata ,Enzyme assay ,Microbiology ,Superoxide dismutase ,Geomyces ,Botany ,biology.protein ,General Agricultural and Biological Sciences ,Epicoccum nigrum ,Cladosporium - Abstract
From 18 soil samples taken in the vicinity of the permanent Bulgarian Antarctic base “St. Kliment Ohridski” (62°38′29″S, 60°21′53″W) on Livingston Island, 109 filamentous fungi were isolated on selective media. The most widespread fungal species were members of the genera Cladosporium, Geomyces, Penicillium and Aspergillus. Other species, already recorded in Antarctic environment, were also isolated: Lecanicillium muscarium, Epicoccum nigrum and Alternaria alternata. Thirty strains demonstrating good growth were screened for antioxidant enzymes superoxide dismutase (SOD) and catalase (CAT) that play an important role in the defense of aerobic organisms against oxidative stress, by converting reactive oxygen species into nontoxic molecules. Six of them showed high enzyme activity. The tested strains produced SOD with statistically significant higher activity at 15°C than at 30°C suggesting that this enzyme is cold-active. Such SOD could be useful in medicine and cosmetics. The best producer of cold-active SOD, Aspergillus glaucus 363, cultivated in bioreactors, demonstrated optimal growth temperature at 25°C and maximum enzyme activities at 25 and 30°C for SOD and CAT, respectively. The electrophoretical analysis showed that the fungus possesses Cu/Zn-SOD.
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- 2010
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21. Halo-and psychrotolerant Geomyces fungi from arctic cryopegs and marine deposits
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N.E. Ivanushkina, Svetlana Ozerskaya, G. A. Kochkina, Vladimir N. Akimov, and D. A. Gilichinskii
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Pseudogymnoascus ,food.ingredient ,Ecology ,Biology ,Permafrost ,biology.organism_classification ,complex mixtures ,Applied Microbiology and Biotechnology ,Microbiology ,humanities ,medicine.drug_formulation_ingredient ,food ,Geomyces ,Arctic ,Temperate climate ,medicine ,Geomyces pannorum - Abstract
Comparative characterization of Geomyces isolates was performed. The isolates were obtained from Arctic cryopegs and the surrounding ancient marine deposits, from nonsaline permafrost soils, and from temperate environments. Microbiological (cultural and morphological) and molecular criteria were used to confirm the identification of the isolates as Geomyces pannorum. The isolates from cryopegs and surrounding marine deposits were shown to differ from those obtained from nonsaline soils and temperate environments in their ability to grow at negative temperatures (−2°C) under increased salt concentration (10%). The results are discussed in relation to the possible inheritance of the adaptive characteristics acquired in specific environments.
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- 2007
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22. Widespread Bat White-Nose Syndrome Fungus, Northeastern China
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Shubao Yang, Keping Sun, Jeffrey T. Foster, Katy L. Parise, Guanjun Lu, Tinglei Jiang, Winifred F. Frick, Jiang Feng, A. Marm Kilpatrick, Joseph R. Hoyt, and Kate E. Langwig
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0301 basic medicine ,Microbiology (medical) ,Myotis petax ,China ,Pseudogymnoascus destructans ,Geomyces ,Murina ,Letter ,Asia ,Epidemiology ,Widespread Bat White-Nose Syndrome Fungus, Northeastern China ,Clinical Sciences ,bats ,Zoology ,lcsh:Medicine ,Nose ,Microbiology ,lcsh:Infectious and parasitic diseases ,Myotis adversus ,03 medical and health sciences ,Chiroptera ,Animals ,Myotis macrodactylus ,lcsh:RC109-216 ,Myotis chinensis ,Letters to the Editor ,biology ,Ecology ,lcsh:R ,Rhinolophus ferrumequinum ,Fungi ,15. Life on land ,biology.organism_classification ,030104 developmental biology ,Infectious Diseases ,Mycoses ,13. Climate action ,Medical Microbiology ,white-nose syndrome ,Public Health and Health Services ,species distribution ,fungal disease - Abstract
To the Editor: Emerging infectious diseases have caused catastrophic declines in wildlife populations, and the introductions of many pathogen have been linked to increases in global trade and travel (1). Mapping the distribution of pathogens is necessary to identify species and populations at risk and identify sources of pathogen spillover and introduction. Once pathogen distributions are known, management actions can be taken to reduce the risk for future global spread (2). Bats with symptoms of white-nose syndrome (WNS) were first detected in the United States in 2006, and the disease has subsequently caused precipitous declines in temperate bat populations across eastern North America (3,4). Pseudogymnoascus destructans, the causative agent of WNS, is a cold-growing fungus that infects bats’ skin during hibernation, leading to more frequent arousals from torpor and death (3). P. destructans is widespread throughout Europe (5), but, to our knowledge, its presence in Asia has not been documented. We sampled bats and hibernacula surfaces (cave walls and ceilings) across northeastern China during 2 visits (June–July 2014 and March 2015) using a previously described swab-sampling technique (6). Bats were captured inside caves and at their entrances. DNA was extracted from samples by using a modified QIAGEN DNeasy blood and tissue kit (QIAGEN, Valencia, CA, USA) and tested in duplicate for the presence of P. destructans with a quantitative real-time PCR (qPCR) (6,7). In the summer of 2014 and winter of 2015, we collected 385 samples from hibernacula surfaces at 12 sites in 3 provinces and 1 municipality (Figure, panel A) and 215 samples from 9 species of bats at 10 sites (summer: Rhinolophus ferrumequinum, Rhinolophus pusillus, Myotis adversus, Myotis macrodactylus, Myotis pilosus, Myotis chinensis, Murina usseriensis; winter: R. ferrumequinum, Murina leucogaster, Myotis petax). During the summer, P. destructans was widely distributed across the study region with positive samples (determined on the basis of qPCR results) obtained from cave surfaces at 9 of 12 sites and from bats at 2 of the 9 sites where bats were sampled (Figure, panel A). Figure A) Distribution of Pseudogymnoascus destructans in cave environments during summer at 9 sites in northeastern China. Pie charts show the prevalence (red indicates fraction of positive samples) of P. destructans, and the size of pie graphs indicates the ... Prevalence of P. destructans was low during summer in the environment (mean prevalence across sites 0.06 ± 0.03) and in bats. Bats of 3 species tested positive for P. destructans in the summer: M. macrodactylus (1/10), M. chinensis (1/1), and M. ussuriensis (1/1). P. destructans was not detected in bats of 4 other species, of which >20 individual animals of each species were sampled (R. ferrumequinum, R. pusillus, M. pilosus, and M. adversus). The low prevalence of P. destructans in bats and on hibernacula surfaces in China during the summer was similar to comparable results from studies in North America (6). In winter, prevalence at the 2 sites we revisited was much higher; 75% of 85 samples from 3 species tested positive, including samples from 16/17 M. petax bats. We also detected P. destructans in bats from 2 additional species (R. ferrumequinum [11/19 bats] and M. leucogaster [11/16 bats]). In addition, during March 2015, we observed visual evidence of P. destructans in bats (M. petax; Figure, panel C) and obtained 2 fungal cultures from swab specimens taken from these bats. To isolate P. destructans from these samples, we plated swab specimens from visibly infected bats on Sabouraud dextrose agar at 10°C. We identified potential P. destructans isolates on the basis of morphologic characteristics. DNA was then extracted from 2 suspected fungal cultures and tested for P. destructans by qPCR, as previously described. To further confirm the presence of P. destructans, we prepared the fungal isolates for Sanger sequencing (Technical Appendix). The 600-nt amplification products from these 2 isolates were sequenced and found to be 100% identical to the P. destructans rRNA gene region targeted for amplification. In addition, using BLAST (http://www.ncbi.nlm.nih.gov/blast.cgi), we found that sequences were a 100% match with isolates from Europe (GenBank accession no. {"type":"entrez-nucleotide","attrs":{"text":"GQ489024","term_id":"284944064","term_text":"GQ489024"}}GQ489024) and North America (GenBank accession no. {"type":"entrez-nucleotide","attrs":{"text":"EU884924","term_id":"211905147","term_text":"EU884924"}}EU884924). This result confirms that the same species of fungus occurs on all 3 continents. We also obtained wing biopsy punches from these bats and found lesions characteristic of WNS by histopathologic examination (Figure, panel B; Technical Appendix). The occurrence of P. destructans at most sites sampled indicates that this pathogen is widespread in eastern Asia (Figure, panel A). The presence of P. destructans in bats from 6 species in China and on bats in 13 species in Europe (8) confirms the generalist nature of this fungus and suggests that it may occur throughout Eurasia (Figure, panel D). Decontamination and restrictions on the use of equipment that has been used in caves in Asia would help reduce the probability of introducing P. destructans to uninfected bat populations (e.g., western North America, New Zealand, southern Australia, and temperate areas of South America). These measures would also reduce the risk of introducing new strains of P. destructans to regions where bats are already infected (e.g., eastern North America and Europe). These measures are necessary to prevent the devastating effects this pathogen has had on bats in North America and would help maintain the ecosystem services that bats provide (9,10). Technical Appendix: The Technical Appendix describes the DNA sequencing of fungal isolates to confirm the presence of Pseudogymnoascus destructans and histologic examination of bat fungal lesions. Click here to view.(238K, pdf)
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- 2015
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23. Fungal diversity in soils and historic wood from the Ross Sea Region of Antarctica
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Roberta L. Farrell, Robert A. Blanchette, Benjamin W. Held, Joel A. Jurgens, and Brett E. Arenz
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biology ,Ecology ,Biodiversity ,Soil Science ,Cladosporium cladosporioides ,biology.organism_classification ,Microbiology ,Taxon ,Geomyces ,Botany ,Internal transcribed spacer ,Epicoccum nigrum ,Temperature gradient gel electrophoresis ,Cladosporium - Abstract
Microorganisms play a dominant role in Antarctic ecosystems, yet little is known about how fungal diversity differs at sites with considerable human activity as compared to those that are remote and relatively pristine. Ross Island, Antarctica is the site of three historic expedition huts left by early explorers to the South Pole, Robert F. Scott and Ernest Shackleton. The fungal diversity of these wooden structures and surrounding soils was investigated with traditional culturing methods as well as with molecular methodology including denaturing gradient gel electrophoresis (DGGE) using the internal transcribed spacer (ITS) regions of ribosomal DNA for identification. From historic wood and artifact samples and soils adjacent to the huts as well as soil samples obtained from the Lake Fryxell Basin, a remote Dry Valley location, and remote sites at Mt. Fleming and the Allan Hills, 71 fungal taxa were identified. The historic huts and associated artifacts have been colonized and degraded by fungi to various extents. The most frequently isolated fungal genera from the historic woods sampled include Cadophora, Cladosporium and Geomyces. Similar genera were found in soil samples collected near the huts. Sampling of soils from locations in the Transantarctic Mountains and Lake Fryxell Basin at considerable distances from the huts and with different soil conditions revealed Cryptococcus spp., Epicoccum nigrum and Cladosporium cladosporioides as the most common fungi present and Cadophora species less commonly isolated. DGGE revealed 28 taxa not detected by culturing including four taxa which possibly have not been previously described since they have less than 50% ITS sequence identity to any GenBank accessions. Fungi capable of causing degradation in the wood and artifacts associated with the expedition huts appear to be similar to those present in Antarctic soils, both near and at more remote locations. These species of fungi are likely indigenous to Antarctica and were apparently greatly influenced by the introduction of organic matter brought by early explorers. Considerable degradation has occurred in the wood and other materials by these fungi.
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- 2006
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24. Environmental factors influencing microbial growth inside the historic expedition huts of Ross Island, Antarctica
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Shona M. Duncan, Roberta L. Farrell, Brett E. Arenz, Robert A. Blanchette, Joel A. Jurgens, and Benjamin W. Held
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Biomaterials ,Fungal growth ,Geography ,Geomyces ,biology ,Ecology ,Cape ,Bacterial growth ,biology.organism_classification ,Waste Management and Disposal ,Microbiology ,Cladosporium - Abstract
Explorers to Antarctica during the Heroic Era of exploration built three wooden huts on Ross Island, Antarctica in 1902, 1908 and 1911. The structures were used as bases of operation while their occupants participated in scientific endeavors and strived to reach the South Pole. The huts, and the thousands of artifacts in and around them, have survived in the Antarctic environment for 9–10 decades, but deterioration has taken place. The successful preservation of these important historic structures and materials requires information on the agents causing deterioration and factors that influence microbial growth. Temperature and relative humidity (RH) were monitored in the expedition huts for several years. During the austral summer months of December and January it was common for temperatures to rise above 0 ∘ C and RH to exceed 80%. Extensive fungal growth was observed on wood and artifacts within the Cape Evans hut, and fungi isolated were identified as species of Cladosporium , Penicillium , Cadophora , Geomyces and Hormonema . The factors that influence RH within the huts and methods to control moisture and arrest microbial growth are discussed.
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- 2005
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25. Diversity of keratinophilic mycoflora in the soil of Agra (India)
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Ajay Kumar, P. Saxena, and J. N. Shrivastava
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Veterinary medicine ,biology ,Acremonium ,Fungi ,General Medicine ,biology.organism_classification ,Microbiology ,Crop ,Geomyces ,Penicillium ,Botany ,Trichophyton ,Seasons ,Soil microbiology ,Microsporum ,Soil Microbiology ,Chrysosporium - Abstract
Diversity of keratinophilic mycoflora in the soil of Agra was under observation for 1 year (July 2001–June 2002) and isolation of keratinophilic fungi was followed by the hair-baiting method. The frequency of occurrence of keratinophilic fungi in 284 soil samples collected from various hospitals, cattle yards, poultry farms, crop fields and play grounds was determined, 204 samples (72 %) having been found to be positive. A total of 33 species classified into 11 genera (Acremonium, Aspergillus, Chrysosporium, Emmonsia, Geomyces, Keratinophyton, Microsporum, Myceliophthora, Penicillium, Sporotrichum, Trichophyton) were encountered from the soil samples.Sporotrichum spp. were found to be the most dominant species followed byTrichophyton simii. The parameter of keratinophilic fungi found in the samples studied ranged from 62 to 80 % where playgrounds yielded the maximum number of species (80 %) while the least dominating soil was hospital soil (62 %). Among all the baits used maximum fungi occurred on human hairs (82 %) followed by chicken feather (74 %), wool (61 %) and the least on horns (45 %). The spectrum of keratinophilic fungi isolated from different sites differed considerably according to the frequency of use by humans.
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- 2004
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26. Investigation and analysis of microbiological communities in natural Ophiocordyceps sinensis
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Guang-Rong Shen, Xuanwei Zhou, Fei Xia, Yan Liu, and Lian-Xian Guo
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DNA, Bacterial ,Mycobiota ,Immunology ,Ophiocordyceps sinensis ,Real-Time Polymerase Chain Reaction ,Tibet ,Applied Microbiology and Biotechnology ,Microbiology ,DNA, Ribosomal ,Actinobacteria ,Soil ,Geomyces ,Ascomycota ,RNA, Ribosomal, 16S ,Botany ,Proteobacteria ,Genetics ,Animals ,Internal transcribed spacer ,DNA, Fungal ,Molecular Biology ,Ribosomal DNA ,Soil Microbiology ,DNA Primers ,Gene Library ,biology ,General Medicine ,DNA ,biology.organism_classification ,Lepidoptera ,Hypocreales ,Phoma ,DNA, Intergenic - Abstract
Ophiocordyceps sinensis is a fungus that parasitizes caterpillars, and more than 30 species of filamentous fungi have been isolated from its fruiting body. However, its microbiological diversity remains unclear. Based on the clone library and quantitative PCR techniques, the bacterial flora and mycobiota of 3 different samples (larva, stromata/sclerotia, and surface soil) from natural O. sinensis specimens were investigated using primer sets that targeted the 16S rRNA gene and internal transcribed spacer region of ribosomal DNA. The results showed that the abundance of bacterial and fungal communities in the soil attached to the surface of O. sinensis was (6.4 ± 1.4) × 106 and (6.0 ± 0.3) × 107 copies/g dry matter, respectively, which was the highest compared with that in the larva and stromal samples. The main groups of bacteria in the O. sinensis samples were Proteobacteria and Actinobacteria, while Ascomycota was the most dominant fungal group in the 3 samples. At the genus level, Geomyces, Phoma, and Trichocladium were the dominant genera in the larval sample, while Geomyces and Cladosporium were the dominant genera in the stromal sample. In conclusion, a great number of bacterial and fungal species were present in naturally occurring O. sinensis specimens, and there was a high diversity of bacterial and fungal communities. These findings contribute to the understanding of the bacterial and fungal community structure of this valuable medicinal fungus and lay the foundation for the future discovery of new medicinal microorganism resources.
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- 2015
27. [Untitled]
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Vedat Kadir Özkan and Hidayet Göçmen
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Fusarium ,Flora ,Microfungi ,biology ,Veterinary (miscellaneous) ,Greenhouse ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Horticulture ,Geomyces ,Penicillium ,Botany ,Soil water ,Phycomycetes ,Agronomy and Crop Science - Abstract
Qualitative and quantitative distributions of microfungal flora of the some greenhouse soils in the vicinity of Lapseki, Canakkale were studied. A total of 25 soil samples were collected from 10 cm depth in five greenhouses. Using soil dilution technique, 128 different microfungal isolates were obtained Isolates collected belonged to Oomycetes (1), Zygomycetes (7), Ascomycetes (9) and 96 belonging to the Deuteromycetes Fifteen isolates were classified as Mycelia Sterilia. The genera of microfungi most abundant in the greenhouse soils were Aspergillus, Penicillium, Geomyces, Exophiala and Fusarium. Qualitative and quantitative distributions of the Aspergillus were higher than those of the other genera. It was found that the maximum value was in greenhouse 5 and the minimum value was in greenhouse 4. The solarization method was the most effective in reducing fungal numbers.
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- 2002
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28. Analysis of fungal communities on historical church window glass by denaturing gradient gel electrophoresis and phylogenetic 18S rDNA sequence analysis
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Claudia Schabereiter-Gurtner, Guadalupe Piñar, Sabine Rölleke, and Werner Lubitz
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Microbiology (medical) ,Sequence analysis ,Aureobasidium ,Leptosphaeria ,DNA, Ribosomal ,Polymerase Chain Reaction ,Microbiology ,Geomyces ,Botany ,RNA, Ribosomal, 18S ,Cloning, Molecular ,DNA, Fungal ,Molecular Biology ,Ribosomal DNA ,Phylogeny ,Engyodontium ,Gel electrophoresis ,biology ,Fungi ,Sequence Analysis, DNA ,biology.organism_classification ,Electrophoresis, Polyacrylamide Gel ,Glass ,Art ,Temperature gradient gel electrophoresis - Abstract
Besides lichens and bacteria, fungi play a crucial role in the biodeterioration of historical glass. In the present paper, the fungal diversity on the surface of two historical church window glasses was investigated by 18S rDNA-based denaturing gradient gel electrophoresis (DGGE) analysis. 566-bp 18S rDNA-specific clone libraries were constructed with primer set NS1/NS2+10. Positive clones were reamplified with primer sets EF4/518rGC (426-bp fragments) and NS26/518rGC (316-bp fragments), amplicons were screened by DGGE and clustered according to their position in DGGE. Results indicated that fungal 18S rDNA clone libraries should be screened with at least two different primer sets to obtain the maximum number of different clones. For phylogenetic sequence analyses, clone inserts were sequenced and compared with 18S rDNA sequences listed in the EMBL database. Similarity values ranged from 93.7% to 99.81% to known fungi. Analyses revealed complex fungal communities consisting of members and relatives of the genera Aspergillus, Aureobasidium, Coniosporum, Capnobotryella, Engyodontium, Geomyces, Kirschsteiniothelia, Leptosphaeria, Rhodotorula, Stanjemonium, Ustilago, and Verticillium. The genera Geomyces and Aureobasidium were present on both glass surfaces. Some genera had not been detected on historical glass so far.
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- 2001
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29. Mycobiome of the bat white nose syndrome affected caves and mines reveals diversity of fungi and local adaptation by the fungal pathogen Pseudogymnoascus (Geomyces) destructans
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Tanya R. Victor, Sudha Chaturvedi, April D. Davis, Shannon L. LaDeau, Kelly Broussard, Alan C. Hicks, Joseph C. Okoniewski, Vishnu Chaturvedi, Tao Zhang, Sunanda S. Rajkumar, and Xiaojiang Li
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Pseudogymnoascus ,lcsh:Medicine ,Wildlife ,law.invention ,Geomyces ,law ,Chiroptera ,Medicine and Health Sciences ,lcsh:Science ,Pathogen ,Polymerase chain reaction ,Phylogeny ,Multidisciplinary ,biology ,Ascomycota ,Ecology ,Microbiota ,Fungal genetics ,Biodiversity ,Adaptation, Physiological ,Caves ,Infectious Diseases ,Veterinary Diseases ,Medical Microbiology ,Research Article ,food.ingredient ,Animal Types ,Molecular Sequence Data ,New York ,Zoology ,Fungus ,Mycology ,Microbiology ,Mining ,Microbial Ecology ,food ,Phylogenetics ,Microbial Control ,DNA, Ribosomal Spacer ,Genetics ,Animals ,Quantitative Biology - Populations and Evolution ,Microbial Pathogens ,Evolutionary Biology ,Population Biology ,lcsh:R ,Ecology and Environmental Sciences ,Populations and Evolution (q-bio.PE) ,Biology and Life Sciences ,biology.organism_classification ,Emerging Infectious Diseases ,Mycoses ,FOS: Biological sciences ,lcsh:Q ,Veterinary Science ,Vermont - Abstract
The investigations of the bat White Nose Syndrome (WNS) have yet to provide answers as to how the causative fungus Pseudogymnoascus (Geomyces) destructans (Pd) first appeared in the Northeast and how a single clone has spread rapidly in the US and Canada. We aimed to catalogue Pd and all other fungi (mycobiome) by the culture-dependent (CD) and culture-independent (CI) methods in four Mines and two Caves from the epicenter of WNS zoonotic. Six hundred sixty-five fungal isolates were obtained by CD method including the live recovery of Pd. Seven hundred three nucleotide sequences that met the definition of operational taxonomic units (OTUs) were recovered by CI methods. Most OTUs belonged to unidentified clones deposited in the databases as environmental nucleic acid sequences (ENAS). The core mycobiome of WNS affected sites comprised of 46 species of fungi from 31 genera recovered in culture, and 17 fungal genera and 31 ENAS identified from clone libraries. Fungi such as Arthroderma spp., Geomyces spp., Kernia spp., Mortierella spp., Penicillium spp., and Verticillium spp. were predominant in culture while Ganoderma spp., Geomyces spp., Mortierella spp., Penicillium spp. and Trichosporon spp. were abundant is clone libraries. Alpha diversity analyses from CI data revealed that fungal community structure was highly diverse. However, the true species diversity remains undetermined due to under sampling. The frequent recovery of Pd indicated that the pathogen has adapted to WNS-afflicted habitats. Further, this study supports the hypothesis that Pd is an introduced species. These findings underscore the need for integrated WNS control measures that target both bats and the fungal pathogen., Comment: 59 pages, 7figures
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- 2014
30. White-nose syndrome fungus: a generalist pathogen of hibernating bats
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Tomáš Bartonička, Jan Zukal, Virgil Brack, Kamil S. Jaron, Natália Martínková, Miroslav Kovarik, Jiri Brichta, Hana Berková, Hana Bandouchova, Karel Ondracek, Gregory G. Turner, Zdenek Rehak, Veronika Kovacova, Matej Dolinay, and Jiri Pikula
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Risk ,Epidemiology ,Science ,Rhinolophus hipposideros ,Population ,Veterinary Microbiology ,Zoology ,Myotis myotis ,Generalist and specialist species ,Microbiology ,Infectious Disease Epidemiology ,Veterinary Epidemiology ,Geomyces ,Ascomycota ,Pseudogymnoascus destructans ,Chiroptera ,Hibernation ,Medicine and Health Sciences ,Animals ,Terrestrial Ecology ,education ,Phylogeny ,Conservation Science ,education.field_of_study ,Multidisciplinary ,biology ,Ecology ,Population Biology ,Ecology and Environmental Sciences ,Biology and Life Sciences ,Biodiversity ,biology.organism_classification ,Barbastella barbastellus ,Mammalogy ,Veterinary Diseases ,Veterinary Mycology ,Plecotus auritus ,Medicine ,Veterinary Science ,Veterinary Pathology ,Research Article - Abstract
Host traits and phylogeny can determine infection risk by driving pathogen transmission and its ability to infect new hosts. Predicting such risks is critical when designing disease mitigation strategies, and especially as regards wildlife, where intensive management is often advocated or prevented by economic and/or practical reasons. We investigated Pseudogymnoascus [Geomyces] destructans infection, the cause of white-nose syndrome (WNS), in relation to chiropteran ecology, behaviour and phylogenetics. While this fungus has caused devastating declines in North American bat populations, there have been no apparent population changes attributable to the disease in Europe. We screened 276 bats of 15 species from hibernacula in the Czech Republic over 2012 and 2013, and provided histopathological evidence for 11 European species positive for WNS. With the exception of Myotis myotis, the other ten species are all new reports for WNS in Europe. Of these, M. emarginatus, Eptesicus nilssonii, Rhinolophus hipposideros, Barbastella barbastellus and Plecotus auritus are new to the list of P. destructans-infected bat species. While the infected species are all statistically phylogenetically related, WNS affects bats from two suborders. These are ecologically diverse and adopt a wide range of hibernating strategies. Occurrence of WNS in distantly related bat species with diverse ecology suggests that the pathogen may be a generalist and that all bats hibernating within the distribution range of P. destructans may be at risk of infection.
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- 2014
31. Diversity of cultivable fungi associated with Antarctic marine sponges and screening for their antimicrobial, antitumoral and antioxidant potential
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Andrea Beiza, Felipe Maza, Aurelio San-Martín, Javiera Norambuena, Ivanna Araya, Inmaculada Vaca, Maria J. Darias, José Darias, Pamela Ubilla, Marlene Henríquez, Renato Chávez, Karen Vergara, Universidad de Chile = University of Chile [Santiago] (UCHILE), Universidad de Santiago de Chile [Santiago] (USACH), Instituto de Productos Naturales y Agrobiologia = Institute of Natural Products and Agrobiology (IPNA), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Fondo Nacional de Desarrollo Científico y Tecnológico (Chile), and Instituto Antártico Chileno
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MESH: Sequence Analysis, DNA ,Antarctic Sponges ,Physiology ,MESH: Porifera ,Antarctic Regions ,Aureobasidium ,Antineoplastic Agents ,MESH: Ascomycota ,Antitumoral ,Applied Microbiology and Biotechnology ,Antioxidants ,Microbiology ,03 medical and health sciences ,Geomyces ,Ascomycota ,MESH: Anti-Bacterial Agents ,Botany ,DNA, Ribosomal Spacer ,MESH: Antarctic Regions ,Animals ,MESH: Animals ,14. Life underwater ,Geomyces sp. Antimicrobial ,MESH: DNA, Ribosomal Spacer ,030304 developmental biology ,0303 health sciences ,Aspergillus ,biology ,030306 microbiology ,MESH: Antioxidants ,Fungi ,General Medicine ,Sequence Analysis, DNA ,15. Life on land ,biology.organism_classification ,Antimicrobial ,Anti-Bacterial Agents ,Porifera ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Trichocladium ,Penicillium ,Phoma ,MESH: Antineoplastic Agents ,Antioxidant ,Biotechnology ,Cladosporium - Abstract
The diversity of sponge-associated fungi has been poorly investigated in remote geographical areas like Antarctica. In this study, 101 phenotypically different fungal isolates were obtained from 11 sponge samples collected in King George Island, Antarctica. The analysis of ITS sequences revealed that they belong to the phylum Ascomycota. Sixty-five isolates belong to the genera Geomyces, Penicillium, Epicoccum, Pseudeurotium, Thelebolus, Cladosporium, Aspergillus, Aureobasidium, Phoma, and Trichocladium but 36 isolates could not be identified at genus level. In order to estimate the potential of these isolates as producers of interesting bioactivities, antimicrobial, antitumoral and antioxidant activities of fungal culture extracts were assayed. Around 51 % of the extracts, mainly from the genus Geomyces and non identified relatives, showed antimicrobial activity against some of the bacteria tested. On the other hand, around 42 % of the extracts showed potent antitumoral activity, Geomyces sp. having the best performance. Finally, the potential of the isolated fungi as producers of antioxidant activity seems to be moderate. Our results suggest that fungi associated with Antarctic sponges, particularly Geomyces, would be valuable sources of antimicrobial and antitumoral compounds. To our knowledge, this is the first report describing the biodiversity and the metabolic potential of fungi associated with Antarctic marine sponges., This work was supported by FONDECYT grant 11090192, Instituto Antártico Chileno (INACH) and “Programa Bicentenario de Ciencia y Tecnología” (Chile) project PDA13.
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- 2014
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32. Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces ( Pseudogymnoascus ) destructans
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Vishnu Chaturvedi, Sudha Chaturvedi, Sushma Nagaraj, Marcus C. Chibucos, and Jonathan Crabtree
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Pseudogymnoascus ,food.ingredient ,biology ,Eukaryotes ,Pathogenic fungus ,biology.organism_classification ,Genome ,Microbiology ,medicine.drug_formulation_ingredient ,Geomyces ,food ,Sensu ,Pseudogymnoascus destructans ,parasitic diseases ,Proteome ,Genetics ,medicine ,Geomyces pannorum ,Molecular Biology - Abstract
We report the draft genome sequences of Geomyces pannorum sensu lato and Geomyces (Pseudogymnoascus) destructans . G. pannorum has a larger proteome than G. destructans , containing more proteins with ascribed enzymatic functions. This dichotomy in the genomes of related psychrophilic fungi is a valuable target for defining their distinct saprobic and pathogenic attributes.
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- 2013
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33. Diversity and bioprospecting of fungal communities associated with endemic and cold-adapted macroalgae in Antarctica
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Alvaro J. Romanha, Policarpo Ademar Sales Junior, Carlos A. Rosa, Carlos L. Zani, Diclá Pupo, Tânia M. A. Alves, Laura E. Furbino, Luiz H. Rosa, Franciane Pellizzari, Valéria M. Godinho, Nair S. Yokoya, Iara F. Santiago, and Charles L. Cantrell
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Antifungal Agents ,Trypanosoma cruzi ,Antarctic Regions ,Microbial Sensitivity Tests ,Biology ,Microbiology ,Geomyces ,Tubulin ,Botany ,DNA, Ribosomal Spacer ,medicine ,Seawater ,Geomyces pannorum ,Internal transcribed spacer ,Ecology, Evolution, Behavior and Systematics ,Bacteria ,Fungi ,Species diversity ,Pathogenic fungus ,biology.organism_classification ,Seaweed ,Trypanocidal Agents ,medicine.drug_formulation_ingredient ,Penicillium ,Monostroma ,Original Article ,Species richness - Abstract
We surveyed the distribution and diversity of fungi associated with eight macroalgae from Antarctica and their capability to produce bioactive compounds. The collections yielded 148 fungal isolates, which were identified using molecular methods as belonging to 21 genera and 50 taxa. The most frequent taxa were Geomyces species (sp.), Penicillium sp. and Metschnikowia australis. Seven fungal isolates associated with the endemic Antarctic macroalgae Monostroma hariotii (Chlorophyte) displayed high internal transcribed spacer sequences similarities with the psychrophilic pathogenic fungus Geomyces destructans. Thirty-three fungal singletons (66%) were identified, representing rare components of the fungal communities. The fungal communities displayed high diversity, richness and dominance indices; however, rarefaction curves indicated that not all of the fungal diversity present was recovered. Penicillium sp. UFMGCB 6034 and Penicillium sp. UFMGCB 6120, recovered from the endemic species Palmaria decipiens (Rhodophyte) and M. hariotii, respectively, yielded extracts with high and selective antifungal and/or trypanocidal activities, in which a preliminary spectral analysis using proton nuclear magnetic resonance spectroscopy indicated the presence of highly functionalised aromatic compounds. These results suggest that the endemic and cold-adapted macroalgae of Antarctica shelter a rich, diversity and complex fungal communities consisting of a few dominant indigenous or mesophilic cold-adapted species, and a large number of rare and/or endemic taxa, which may provide an interesting model of algal–fungal interactions under extreme conditions as well as a potential source of bioactive compounds.
- Published
- 2013
34. Temperature-Dependent Growth of Geomyces destructans, the Fungus That Causes Bat White-Nose Syndrome
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Gudrun Wibbelt, Justin G. Boyles, William Waldrep, Michelle L. Verant, and David S. Blehert
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Hibernation ,Pseudogymnoascus ,food.ingredient ,Science ,Animal Types ,Veterinary Microbiology ,Zoology ,Fungus ,Mycology ,Wildlife ,Nose ,Microbiology ,Microbial Ecology ,Geomyces ,food ,Ascomycota ,Pseudogymnoascus destructans ,Microbial Physiology ,Chiroptera ,Botany ,Animals ,Dermatomycoses ,Biology ,Microbial Pathogens ,Multidisciplinary ,biology ,Fungi ,Temperature ,biology.organism_classification ,White-nose syndrome ,Emergent disease ,Host-Pathogen Interaction ,Europe ,Emerging Infectious Diseases ,Veterinary Diseases ,Veterinary Mycology ,Medical Microbiology ,Geographic origin ,Host-Pathogen Interactions ,North America ,Medicine ,Veterinary Science ,Research Article - Abstract
White-nose syndrome (WNS) is an emergent disease estimated to have killed over five million North American bats. Caused by the psychrophilic fungus Geomyces destructans, WNS specifically affects bats during hibernation. We describe temperature-dependent growth performance and morphology for six independent isolates of G. destructans from North America and Europe. Thermal performance curves for all isolates displayed an intermediate peak with rapid decline in performance above the peak. Optimal temperatures for growth were between 12.5 and 15.8°C, and the upper critical temperature for growth was between 19.0 and 19.8°C. Growth rates varied across isolates, irrespective of geographic origin, and above 12°C all isolates displayed atypical morphology that may have implications for proliferation of the fungus. This study demonstrates that small variations in temperature, consistent with those inherent of bat hibernacula, affect growth performance and physiology of G. destructans, which may influence temperature-dependent progression and severity of WNS in wild bats.
- Published
- 2012
35. Filamentous Soil Fungi from Ny-Ålesund, Spitsbergen, and Screening for Extracellular Enzymes
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Sanjay Singh, Rasik Ravindra, Paras Nath Singh, Lal S. Yadav, and Shiv Mohan Singh
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Geomyces ,Emericella ,biology ,Acremonium ,Botany ,Aspergillus aculeatus ,Xylaria ,Mortierella ,biology.organism_classification ,Corynespora ,Ecology, Evolution, Behavior and Systematics ,Cladosporium ,Microbiology - Abstract
Soil filamentous fungi from Ny-Alesund, Spitsbergen, were studied. A total of 30 fungal isolates were identified by morpho-taxonomy, and the identity of some morpho-taxonomically complex isolates was authenticated by ITS1-5.8S and ITS2 rDNA domain sequence similarity. The isolates belonged to 19 species under 14 genera ( Acremonium , Arthrinium , Aspergillus , Cladosporium , Corynespora , Emericella , Geomyces , Mortierella , Mucor , Myrothecium , Penicillium , Phialophora , Preussia , Xylaria ). To the best of our knowledge, Acremonium roseolum , Aspergillus aculeatus , Emericella nidulans , and Preussia sp. are the first northernmost records from Arctic soils. The viable fungal count in different soil samples varied from 0.5 • 10 4 to 2.0 • 10 5 g -1 . Species richness in different soil samples was also calculated. Mortierella was one of the most dominant genera in Arctic soils. A temperature tolerance study was carried out for all the isolates, and representative species were screened for their extracellular enzyme activity (amylase, cellulase, phosphatase, and pectinase) at 4˚C and 20˚C. Among the 30 isolates, seven showed cellulolytic activity, two were phosphate solubilizers, three had amylolytic activity, and only one showed pectinolytic activity on solid media. CMCase (β1, 4-endoglucanase) activity was quantified in seven isolates that exhibited positive activity during preliminary screening. The records of enzyme activity for amylases, pectinases, and cellulases are the first from the fungi of Spitsbergen. The present study indicates the dominance in Ny-Alesund of cellulolytic strains, which may serve as potent decomposers in Arctic tundra. These isolates may be used to facilitate the mineralization of cellulolytic wastes generated by human activities in colder hilly areas across the world, including the Himalayas in India.
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- 2012
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36. Microbial Virulence as an Emergent Property: Consequences and Opportunities
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Liise Anne Pirofski, Ferric C. Fang, and Arturo Casadevall
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lcsh:Immunologic diseases. Allergy ,Opinion ,Virulence Factors ,Immunology ,Virulence ,Models, Biological ,Microbiology ,Decline in amphibian populations ,03 medical and health sciences ,Geomyces ,Virology ,Genetics ,Animals ,Humans ,Biology ,lcsh:QH301-705.5 ,Molecular Biology ,Pathogen ,030304 developmental biology ,0303 health sciences ,Extinction ,Bacteria ,biology ,030306 microbiology ,Host (biology) ,Ecology ,Bacterial Infections ,15. Life on land ,biology.organism_classification ,3. Good health ,Host-Pathogen Interaction ,lcsh:Biology (General) ,Virus Diseases ,13. Climate action ,Viral evolution ,Viruses ,Threatened species ,Parasitology ,lcsh:RC581-607 - Abstract
Although an existential threat from the microbial world might seem like science fiction, a catastrophic decline in amphibian populations with the extinction of dozens of species has been attributed to a chytrid fungus [1], [2], and North American bats are being decimated by Geomyces destructans, a new fungal pathogen [3]. Hence, individual microbes can cause the extinction of a species. In the foregoing instances, neither fungus had a known relationship with the threatened species; there was neither selection pressure for pathogen attenuation nor effective host defense. Humans are also constantly confronted by new microbial threats as witnessed by the appearance of HIV, SARS coronavirus, and the latest influenza pandemic. While some microbial threats seem to be frequently emerging or re-emerging, others seem to wane or attenuate with time, as exemplified by the decline of rheumatic heart disease [4], the evolution of syphilis from a fulminant to a chronic disease [5], and the disappearance of “English sweating sickness” [6]. A defining feature of infectious diseases is changeability, with change being a function of microbial, host, environmental, and societal changes that together translate into changes in the outcome of a host–microbe interaction. Given that species as varied as amphibians and bats can be threatened with extinction by microbes, the development of predictive tools for identifying microbial threats is both desirable and important.
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- 2011
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37. Specific alterations in complement protein activity of little brown myotis (Myotis lucifugus) hibernating in white-nose syndrome affected sites
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Renee M. Fallier, Marianne S. Moore, Jonathan D. Reichard, Timothy D. Murtha, Bita Zahedi, and Thomas H. Kunz
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Male ,Disease Ecology ,Blood Bactericidal Activity ,Staphylococcus aureus ,Ecophysiology ,Science ,Immunology ,Myotis myotis ,Microbiology ,Geomyces ,Chiroptera ,Hibernation ,Blood plasma ,Candida albicans ,Escherichia coli ,Animals ,Terrestrial Ecology ,Biology ,Physiological Ecology ,Immune Response ,Multidisciplinary ,Models, Statistical ,biology ,Ecology ,Population Biology ,Fungal Diseases ,Torpor ,Complement System Proteins ,Syndrome ,Myotis lucifugus ,biology.organism_classification ,Corpus albicans ,Mammalogy ,Infectious Diseases ,Mycoses ,Sample Size ,Medicine ,Female ,Clinical Immunology ,Seasons ,Population Ecology ,Public Health ,Zoology ,Research Article - Abstract
White-nose syndrome (WNS) is the most devastating condition ever reported for hibernating bats, causing widespread mortality in the northeastern United States. The syndrome is characterized by cutaneous lesions caused by a recently identified psychrophilic and keratinophylic fungus (Geomyces destructans), depleted fat reserves, atypical behavior, and damage to wings; however, the proximate cause of mortality is still uncertain. To assess relative levels of immunocompetence in bats hibernating in WNS-affected sites compared with levels in unaffected bats, we describe blood plasma complement protein activity in hibernating little brown myotis (Myotis lucifugus) based on microbicidal competence assays using Escherichia coli, Staphylococcus aureus and Candida albicans. Blood plasma from bats collected during mid-hibernation at WNS-affected sites had higher bactericidal ability against E. coli and S. aureus, but lower fungicidal ability against C. albicans when compared with blood plasma from bats collected at unaffected sites. Within affected sites during mid-hibernation, we observed no difference in microbicidal ability between bats displaying obvious fungal infections compared to those without. Bactericidal ability against E. coli decreased significantly as hibernation progressed in bats collected from an affected site. Bactericidal ability against E. coli and fungicidal ability against C. albicans were positively correlated with body mass index (BMI) during late hibernation. We also compared complement activity against the three microbes within individuals and found that the ability of blood plasma from hibernating M. lucifugus to lyse microbial cells differed as follows: E. coli>S. aureus>C. albicans. Overall, bats affected by WNS experience both relatively elevated and reduced innate immune responses depending on the microbe tested, although the cause of observed immunological changes remains unknown. Additionally, considerable trade-offs may exist between energy conservation and immunological responses. Relationships between immune activity and torpor, including associated energy expenditure, are likely critical components in the development of WNS.
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- 2011
38. Endophytic fungi community associated with the dicotyledonous plant Colobanthus quitensis (Kunth) Bartl. (Caryophyllaceae) in Antarctica
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Carlos A. Rosa, Mariana L.A. Vieira, Iara F. Santiago, and Luiz Henrique Rosa
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Entrophospora ,Microdochium ,Ecology ,biology ,Colobanthus quitensis ,Davidiella tassiana ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Plant use of endophytic fungi in defense ,Geomyces ,Botany ,Phaeosphaeria ,Species richness - Abstract
This work describes the distribution and diversity of fungal endophytes associated with leaves of Colobanthus quitensis, a dicotyledonous plant that lives in Antarctica. A total of 188 fungal isolates were obtained from six different sites located across a 25.5-km transect through Admiralty Bay, at King George Island. The ITS1-5.8S-ITS2 nuclear ribosomal gene was sequenced and the endophytic fungi were identified as species belonging to the genera Aspergillus, Cadophora, Davidiella, Entrophospora, Fusarium, Geomyces, Gyoerffyella, Microdochium, Mycocentrospora, and Phaeosphaeria. Davidiella tassiana was the prevalent species with 20.2% abundance. The endophytic fungal community showed low richness and high dominance indexes. Eleven endophytic taxa (58%) were fungi able to produce melanin in their hyphae, which may confer resistance against freezing temperatures and high rates of UV radiation and may increase their fitness in the extreme conditions of the Antarctic environment. In addition, phytopathogenic and decomposer species associated with healthy leaves of C. quitensis were found. The results obtained in this work show that C. quitensis is an interesting reservoir of saprobic and pathogenic fungal species, and could be a community model for further ecological and evolutionary studies, as well as studies of the adaptation mechanisms these microorganisms have to the extreme conditions in Antarctica.
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- 2010
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39. Morphological and molecular characterizations of psychrophilic fungus Geomyces destructans from New York bats with White Nose Syndrome (WNS)
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Melissa Behr, Dianna J. Bopp, Rama Ramani, Deborah J. Springer, Britta A. Wood, William A. Samsonoff, Sudha Chaturvedi, Vishnu Chaturvedi, Ping Ren, Calvin M. Butchkoski, Xiaojiang Li, Marcia K. Peck, Robert J. Rudd, Alan C. Hicks, and Ward B. Stone
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Pathology ,medicine.medical_specialty ,Pseudogymnoascus ,food.ingredient ,Science ,New York ,Fungus ,Microbiology ,Geomyces ,food ,Ascomycota ,Pseudogymnoascus destructans ,Fungal Structures ,Chiroptera ,medicine ,Animals ,DNA, Fungal ,Mycological Typing Techniques ,Phylogeny ,Multidisciplinary ,biology ,Fungal genetics ,Microbiology/Medical Microbiology ,Sequence Analysis, DNA ,Syndrome ,Myotis lucifugus ,biology.organism_classification ,Random Amplified Polymorphic DNA Technique ,Infectious Diseases ,Mycoses ,Organ Specificity ,Medicine ,Fungus Present ,Research Article - Abstract
BackgroundMassive die-offs of little brown bats (Myotis lucifugus) have been occurring since 2006 in hibernation sites around Albany, New York, and this problem has spread to other States in the Northeastern United States. White cottony fungal growth is seen on the snouts of affected animals, a prominent sign of White Nose Syndrome (WNS). A previous report described the involvement of the fungus Geomyces destructans in WNS, but an identical fungus was recently isolated in France from a bat that was evidently healthy. The fungus has been recovered sparsely despite plentiful availability of afflicted animals.Methodology/principal findingsWe have investigated 100 bat and environmental samples from eight affected sites in 2008. Our findings provide strong evidence for an etiologic role of G. destructans in bat WNS. (i) Direct smears from bat snouts, Periodic Acid Schiff-stained tissue sections from infected tissues, and scanning electron micrographs of bat tissues all showed fungal structures similar to those of G. destructans. (ii) G. destructans DNA was directly amplified from infected bat tissues, (iii) Isolations of G. destructans in cultures from infected bat tissues showed 100% DNA match with the fungus present in positive tissue samples. (iv) RAPD patterns for all G. destructans cultures isolated from two sites were indistinguishable. (v) The fungal isolates showed psychrophilic growth. (vi) We identified in vitro proteolytic activities suggestive of known fungal pathogenic traits in G. destructans.Conclusions/significanceFurther studies are needed to understand whether G. destructans WNS is a symptom or a trigger for bat mass mortality. The availability of well-characterized G. destructans strains should promote an understanding of bat-fungus relationships, and should aid in the screening of biological and chemical control agents.
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- 2010
40. Skin Lesions in European Hibernating Bats Associated with Geomyces destructans, the Etiologic Agent of White-Nose Syndrome
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Daniel Lacremans, Gudrun Wibbelt, Frédéric Forget, Bernd Ohlendorf, Andreas Kurth, Tamás Görföl, Thijs Bosch, Kristin Mühldorfer, Karsten Passior, and Sébastien J. Puechmaille
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Male ,Hibernation ,Pathology ,Time Factors ,Veterinary Microbiology ,Pathogenesis ,Wildlife ,Wiskundige en Statistische Methoden - Biometris ,Geomyces ,Chiroptera ,Fungal colonization ,Skin ,Conservation Science ,Multidisciplinary ,Ecology ,Fungal Diseases ,Host-Pathogen Interaction ,Mammalogy ,Infectious Diseases ,Veterinary Diseases ,Veterinary Mycology ,Medicine ,Female ,Skin lesion ,Veterinary Pathology ,Research Article ,medicine.medical_specialty ,animal structures ,Animal Types ,Science ,Zoology ,Mycology ,Biology ,Skin Diseases ,Microbiology ,Ascomycota ,Fungal Structures ,medicine ,Animals ,Life Science ,Mathematical and Statistical Methods - Biometris ,Fungi ,Insectivore ,White-nose syndrome ,biology.organism_classification ,Emerging Infectious Diseases ,Veterinary Science ,Fungal hyphae - Abstract
White-nose syndrome (WNS) has claimed the lives of millions of hibernating insectivorous bats in North America. Its etiologic agent, the psychrophilic fungus Geomyces destructans, causes skin lesions that are the hallmark of the disease. The fungal infection is characterized by a white powdery growth on muzzle, ears and wing membranes. While WNS may threaten some species of North American bats with regional extinction, infection in hibernating bats in Europe seems not to be associated with significant mortality. We performed histopathological investigations on biopsy samples of 11 hibernating European bats, originating from 4 different countries, colonized by G. destructans. One additional bat was euthanized to allow thorough examination of multiple strips of its wing membranes. Molecular analyses of touch imprints, swabs and skin samples confirmed that fungal structures were G. destructans. Additionally, archived field notes on hibernacula monitoring data in the Harz Mountains, Germany, over an 11-year period (2000-2011) revealed multiple capture-recapture events of 8 banded bats repeatedly displaying characteristic fungal colonization. Skin lesions of G. destructans-affected hibernating European bats are intriguingly similar to the epidermal lesions described in North American bats. Nevertheless, deep invasion of fungal hyphae into the dermal connective tissue with resulting ulceration like in North American bats was not observed in the biopsy samples of European bats; all lesions found were restricted to the layers of the epidermis and its adnexae. Two bats had mild epidermal cupping erosions as described for North American bats. The possible mechanisms for any difference in outcomes of G. destructans infection in European and North American bats still need to be elucidated.
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- 2013
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41. Frequent Arousal from Hibernation Linked to Severity of Infection and Mortality in Bats with White-Nose Syndrome
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Megan E. Vodzak, Craig L. Frank, Gregory G. Turner, Laura E. Grieneisen, Craig W. Stihler, Carol U. Meteyer, Alan C. Hicks, Sarah A. Brownlee, Eric R. Britzke, Roymon Jacob, Laura K. Muller, David S. Blehert, DeeAnn M. Reeder, Scott R. Darling, and Allen Kurta
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Male ,Hibernation ,Pathology ,medicine.medical_specialty ,Anatomy and Physiology ,lcsh:Medicine ,Physiology ,Mycology ,Nose ,Microbiology ,Veterinary Epidemiology ,Arousal ,Geomyces ,Ascomycota ,Pseudogymnoascus destructans ,Chiroptera ,medicine ,Animals ,Animal Physiology ,lcsh:Science ,Biology ,Skin ,Multidisciplinary ,Ecology ,Animal Behavior ,biology ,lcsh:R ,Fungi ,Torpor ,Myotis lucifugus ,White-nose syndrome ,biology.organism_classification ,Mammalogy ,medicine.anatomical_structure ,Veterinary Diseases ,Veterinary Mycology ,lcsh:Q ,Female ,Veterinary Science ,Zoology ,Research Article - Abstract
White-nose syndrome (WNS), an emerging infectious disease that has killed over 5.5 million hibernating bats, is named for the causative agent, a white fungus (Geomyces destructans (Gd)) that invades the skin of torpid bats. During hibernation, arousals to warm (euthermic) body temperatures are normal but deplete fat stores. Temperature-sensitive dataloggers were attached to the backs of 504 free-ranging little brown bats (Myotis lucifugus) in hibernacula located throughout the northeastern USA. Dataloggers were retrieved at the end of the hibernation season and complete profiles of skin temperature data were available from 83 bats, which were categorized as: (1) unaffected, (2) WNS-affected but alive at time of datalogger removal, or (3) WNS-affected but found dead at time of datalogger removal. Histological confirmation of WNS severity (as indexed by degree of fungal infection) as well as confirmation of presence/absence of DNA from Gd by PCR was determined for 26 animals. We demonstrated that WNS-affected bats aroused to euthermic body temperatures more frequently than unaffected bats, likely contributing to subsequent mortality. Within the subset of WNS-affected bats that were found dead at the time of datalogger removal, the number of arousal bouts since datalogger attachment significantly predicted date of death. Additionally, the severity of cutaneous Gd infection correlated with the number of arousal episodes from torpor during hibernation. Thus, increased frequency of arousal from torpor likely contributes to WNS-associated mortality, but the question of how Gd infection induces increased arousals remains unanswered.
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- 2012
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42. Antifungal Testing and High-Throughput Screening of Compound Library against Geomyces destructans, the Etiologic Agent of Geomycosis (WNS) in Bats
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Xiaojiang Li, Gregory Hurteau, Sunanda S. Rajkumar, Sudha Chaturvedi, Vishnu Chaturvedi, and Michael Shtutman
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Antifungal Agents ,Itraconazole ,Science ,Microbial Sensitivity Tests ,Mycology ,Microbiology ,Flucytosine ,Small Molecule Libraries ,Geomyces ,Ascomycota ,Chiroptera ,Amphotericin B ,medicine ,Animals ,Biology ,Microbial Pathogens ,chemistry.chemical_classification ,Voriconazole ,Multidisciplinary ,biology ,Myotis lucifugus ,biology.organism_classification ,High-Throughput Screening Assays ,Infectious Diseases ,Mycoses ,chemistry ,Medicine ,Azole ,Fluconazole ,Research Article ,medicine.drug - Abstract
Bats in the northeastern U.S. are affected by geomycosis caused by the fungus Geomyces destructans (Gd). This infection is commonly referred to as White Nose Syndrome (WNS). Over a million hibernating bats have died since the fungus was first discovered in 2006 in a cave near Albany, New York. A population viability analysis conducted on little brown bats (Myotis lucifugus), one of six bat species infected with Gd, suggests regional extinction of this species within 20 years. The fungus Gd is a psychrophile ("cold loving"), but nothing is known about how it thrives at low temperatures and what pathogenic attributes allow it to infect bats. This study aimed to determine if currently available antifungal drugs and biocides are effective against Gd. We tested five Gd strains for their susceptibility to antifungal drugs and high-throughput screened (HTS) one representative strain with SpectrumPlus compound library containing 1,920 compounds. The results indicated that Gd is susceptible to a number of antifungal drugs at concentrations similar to the susceptibility range of human pathogenic fungi. Strains of Gd were susceptible to amphotericin B, fluconazole, itraconazole, ketoconazole and voriconazole. In contrast, very high MICs (minimum inhibitory concentrations) of flucytosine and echinocandins were needed for growth inhibition, which were suggestive of fungal resistance to these drugs. Of the 1,920 compounds in the library, a few caused 50%--to greater than 90% inhibition of Gd growth. A number of azole antifungals, a fungicide, and some biocides caused prominent growth inhibition. Our results could provide a theoretical basis for future strategies aimed at the rehabilitation of most affected bat species and for decontamination of Gd in the cave environment.
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- 2011
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43. Reliability of exoantigens for differentiating Blastomyces dermatitidis and Histoplasma capsulatum from Chrysosporium and Geomyces species
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P G Standard, Leo Kaufman, A.S. Sekhon, and A. K. Garg
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Microbiology (medical) ,Antiserum ,Antigens, Fungal ,biology ,Blastomyces dermatitidis ,Histoplasma ,General Medicine ,Fungi imperfecti ,Cross Reactions ,biology.organism_classification ,Precipitin ,Chrysosporium ,Microbiology ,medicine.drug_formulation_ingredient ,Infectious Diseases ,Geomyces ,Antigen ,Blastomyces ,medicine ,Mitosporic Fungi ,Geomyces pannorum - Abstract
A recent study suggested that Chrysosporium species have the same diagnostic antigens as Histoplasma capsulatum and Blastomyces dermatitidis and, thus, compromise the antigenic identification of these pathogens. In light of these findings, studies were undertaken to determine the reliability of the exoantigen tests for identifying B. dermatitidis and H. capsulatum organisms from cultures. Sixty-three slant or shake culture extracts, or both, were derived from C. asperatum , C. keratinophilum , C. pruinosum , C. parvum var. crescens , Geomyces ( Chrysosporium ) pannorus , B. dermatitidis , and H. capsulatum . These were analyzed by use of a commercial exoantigen kit and exoantigen test reagents obtained from a commercial source. The results of these analyses were compared with those obtained with Centers for Disease Control reagents. Many of the extracts derived from nonpathogenic fungi produced nonspecific precipitin bands when reacted with the kit and reference antisera, particularly the B. dermatitidis antisera. None, however, produced antigens identical to the specific B. dermatitidis A and H. capsulatum H and M antigens. Our findings indicate that the properly controlled immunoidentification procedure is 100% specific for B. dermatitidis and H. capsulatum , and that cross-reacting antigens derived from morphologically similar saparophytic fungi do not pose identification problems.
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- 1986
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44. Budding in Emmonsia Crescens
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Chester W. Emmons
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0106 biological sciences ,0301 basic medicine ,Blastomyces ,Paracoccidioides brasiliensis ,biology ,Physiology ,Blastomyces dermatitidis ,Cell Biology ,General Medicine ,Fungus ,030108 mycology & parasitology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Conidium ,Microbiology ,03 medical and health sciences ,medicine.drug_formulation_ingredient ,Geomyces ,Genetics ,Emmonsia parva ,medicine ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Chrysosporium - Abstract
Increased temperature of incubation induces growth in vitro of the parasitic forms of some of the fungi which cause systemic mycoses in man. DeMonbreun observed this phenomenon when he described the growth of Histoplasma capsulatum Darling in vitro on various culture media and under differing conditions of incubation (5). DeMonbreun described also the development in vitro of the yeast form of Blastomyces dermatitids Gilchrist & Stokes when cultures were incubated at 37 C (6). Redaelli and Ciferri reported that the parasitic, multiple-budding form of Paracoccidioides brasiliensis (Splendore) Almeida can be maintained in vitro at 37 C (13). The effects of temperature and other factors upon the morphology of these and other fungal pathogens of man have been reviewed in many papers (3, 4, 10, 11, 12, 14, 15). The most notable features of Emmonsia crescens Emmons & Jellison as it grows in the lungs of animals are its great increase in size (up to 106 increase in volume of the inhaled conidia), the great thickness of the wall (up to 70 /A) and its failure to reproduce in mammalian tissue in any manner. The parasitic form of this fungus can be produced in vitro by incubation of the fungus at 37 C (8). Because of these striking characteristics of E. crescens Emmons and Jellison proposed the name "adiaspore" for the transformed conidium which grows to an enormous size (up to 700 , in diam) in the lung of a naturally or experimentally infected animal without reproducing (8). Because of these unusual features, the generic name proposed by Ciferri and Montemartini (2) is retained in this paper. Carmichael has referred Emmonsia parva (Emmons & Ashburn) Ciferri & Montemartini, E. crescens (which he designated as a variety of E. parva), Blastomyces dermatitidis, Aleurisma spp. and Geomyces spp. to the genus Chrysosporium Corda without attaching sufficient importance to the in vivo behavior of these fungi (1). Chrysosporium spp., as defined by
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- 1964
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- View/download PDF
45. Taxonomy of Haplosporangium parvum
- Author
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A. Montemartini and R. Ciferri
- Subjects
Alanine ,biology ,Ecology ,Veterinary (miscellaneous) ,Thermophile ,Virulence ,Fungus ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Mortierella ,Geomyces ,Microbial ecology ,parasitic diseases ,Taxonomy (biology) ,Mitosporic Fungi ,Proline ,Agronomy and Crop Science - Abstract
A strain ofHaplosporangium parvum has been isolated from Italian soil. It has been comparatively studied with six North American and a Korean strain. Two American and the Italian strains are thermophilic (opt. about 35° C) while the other four grow better at temperatures around 20° C. The assimilation of nitrogen sources has been comparatively studied. In addition to peptoneH. parvum metabolizes urea and most aminoacids, whileH. bisporale assimilates peptone, leucine, alanine, glutamic acid and proline only. On the basis of N assimilation and thermophily, a key of the studied strain is established. A comparison ofH. bisporale withH. parvum, confirmed that the former species is a Phycomycete, while the latter is a Moniliaceous, aleuriosporic fungus. All the strains are feebly pathogenic, but the virulence of the Italian soil isolate is equal to that of the most virulent strains isolated from animal lungs (Alberta, Canada). The taxonomy ofH. parvum has been studied in relation to the more or less allied generaAleurisma, Glenosporella, Geomyces andStaphylotrichum. It is concluded thatH. parvum may be better classified as a new genus, and the monotypic genusEmmonsia withE. parva (Emm. etAshb.) n. comb. is proposed, although the entire group of aleuriosporaceous fungi needs revision.
- Published
- 1959
- Full Text
- View/download PDF
46. Filamentous fungi in the transient flora of the alimentary tract
- Author
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R.R. Davies and Margaret Leese
- Subjects
Mucor ,Mouth ,Flora ,Aspergillus ,biology ,Fungi ,Penicillium ,food and beverages ,Geotrichum ,General Medicine ,Fungus ,Tetracycline ,biology.organism_classification ,Microbiology ,Feces ,Infectious Diseases ,Geomyces ,Methods ,Humans ,Mitosporic Fungi ,Seasons ,Cladosporium - Abstract
Of 301 filamentous fungi identified from paired mouth-washings and stool specimens from 368 patients, the representatives of 12 genera, among which were included 8 species of Penicillium and 4 of Aspergillus, were obtained from mouth-washes, and 14 genera which included 14 species of Penicillium and 6 of Aspergillus from stools. Penicillium comprised 50% of the filamentous fungi isolated, Geotrichum 8%, Aspergillus 7%, Geomyces 4%, Cladosporium 2·5% and Mucor 2%.It is shown that the carriage of filamentous fungi is affected by season and that the recovery of these fungi from mouth-washes and stool specimens is significantly higher in the summer.No fungus which has been reported as a cause of mycotoxicosis was isolated.
- Published
- 1968
- Full Text
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47. Phosphate-independent utilization of phosphonoacetic acid as sole phosphorus source by a psychrophilic strain of Geomyces pannorum P15
- Author
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Magdalena Klimek-Ochab
- Subjects
Phosphonoacetic Acid ,Nitrogen ,chemistry.chemical_element ,Bacterial growth ,Microbiology ,Article ,Phosphates ,chemistry.chemical_compound ,Geomyces ,Ascomycota ,medicine ,Geomyces pannorum ,Psychrophile ,biology ,Chemistry ,Phosphorus ,General Medicine ,Metabolism ,Phosphate ,biology.organism_classification ,Carbon ,Enzyme assay ,medicine.drug_formulation_ingredient ,Biochemistry ,biology.protein - Abstract
A psychrophilic fungal strain of Geomyces pannorum P15 was screened for its ability to utilize a range of synthetic and natural organophosphonate compounds as the sole source of phosphorus, nitrogen, or carbon. Only phosphonoacetic acid served as a phosphorus source for microbial growth in phosphate-independent manner. Substrate metabolism did not lead to extracellular release of inorganic phosphate. No phosphonate metabolizing enzyme activity was detectable in cell-free extracts prepared from Geomyces biomass pregrown on 2 mmol/L phosphonoacetic acid.
- Full Text
- View/download PDF
48. Keratinolytic and keratinophilic fungi of children's sandpits in the city of Turin
- Author
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V. Filipello Marchisio
- Subjects
Public park ,Risk ,Veterinary medicine ,Veterinary (miscellaneous) ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Geomyces ,medicine ,Animals ,Dermatomycoses ,Humans ,Trichophyton ,Child ,Soil Microbiology ,Chrysosporium ,biology ,Arthrodermataceae ,Mariannaea ,biology.organism_classification ,Italy ,Dermatophyte ,Sandpit ,Keratins ,Agronomy and Crop Science ,Microsporum ,Hair - Abstract
Soils rich in keratinic residues constitute a permanent or occasional reservoir for dermatophytes and keratinolytic and keratinophilic fungi, and are a source of potential infection for man and animals. The keratinolytic and keratinophilic mycoflora of 28 sandpits in Turin was studied to evaluate the risk of fungal skin infections that is run by children as they play in public parks and to lay the ground-work for a next epidemiological study of soil- and animal-inhabiting dermatophytes found in cities, and their impact on human dermatophytoses. Fifty seven species were isolated and a high percentage (52%) showed keratinolytic activity. Species of Microsporum, Trichophyton, Mariannaea, Aphanoascus, Chrysosporium, Malbranchea and Geomyces showed the most active keratinolysis.
- Published
- 1986
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