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Background and aims: Phytogenic bioactive plant products have shown promise in mitigating Australian pasture dieback (PDB) syndrome, a complex condition that adversely affects pasture productivity and sustainability. PDB is characterised by the progressive decline of grass, resulting in reduced soil organic matter. Recent studies have indicated that soil microbial communities play a crucial role in the remediation of affected pastures. In our previous research, the application of a phytogenic secondary metabolic product demonstrated a positive impact on soil microbial diversity, and it significantly increased pasture biomass. Building upon our previous study, we aimed to further investigate the mechanisms underlying pasture improvement through phytogenic treatment by spraying. Methods: Here, we conducted a shotgun metagenomic investigation of the soil microbiome functional pathways affected by the phytogenic treatment. Results: The application of phytogenic treatment to the PDB-affected soil resulted in a notable increase in soil microbial functional richness and diversity and showed alterations in beta diversity. Among the 65 significantly altered functional pathways, 54 showed an increase, while 11 decreased in response to the phytogenic treatment. The treatment altered the soil's functional capacity towards increased production of biomolecules, including amino acids, lipids, and cofactors, thus enhancing the soil's nutritional value. Furthermore, the phytogenic treatment significantly increased pathways involved in soil detoxification and carbon sequestration, suggesting its potential to promote soil health and carbon storage. Conclusion: Our findings contribute to a better understanding of the mechanisms involved in improving the soils affected by pasture dieback. These insights will help develop sustainable strategies for pasture production. [ABSTRACT FROM AUTHOR]

The rise of sequencing technology brought about a surge of new methodologies that offered a new and deeper level of understanding of the role of the microbiome in the health and performance of livestock. This started a chain reaction in technology evolution, and a decade later, we have developed a new appreciation of a healthy gut and the role of early colonisation and nutrition in developing the microbiome, and its subsequent impact on animal productivity. An abundance of new products flooded the livestock supplement market with the promise of improving the health of intestinal microbiota. However, the impact of these products and any potential gains they might provide have not always been quantified or validated. Further to this, the potential interactions with the microbial community naturally occurring in the feed-base have not commonly been considered. We have recently shown that animal feed carries a complex microbial community that can have various impacts, including negating farm biosecurity measures. The ruminant animal provides an even greater level of complexity where physiological drivers act to maintain ruminal homeostasis. Despite many advances, numerous knowledge gaps remain, and the methodologies are not without their challenges with almost constant evolution in analysing and interpreting data. In this paper, we will discuss the benefits, challenges and shortfalls of microbiome science, its interfaces with multi-omics research and the strategies of its contribution to animal production science. With advances in sequencing technology, research of microbial communities has become more accessible and affordable. In livestock research, the roles of microbiota are associated with animal performance and welfare. Although universally accepted, amplicon-sequencing methodology has several issues that need to be considered in data interpretation. Here we review the main shortfalls, benefits and uses of the methodology in livestock research. [ABSTRACT FROM AUTHOR]