1. Whole-Genome Sequencing of Inbred Mouse Strains Selected for High and Low Open-Field Activity
- Author
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Luke M. Evans, Aimee L. Thomas, John C. DeFries, Matthew S. Powers, Winona C. Booher, Christopher A. Lowry, Elissa J. Chesler, Marissa A. Ehringer, and Michaela D. Nelsen
- Subjects
0301 basic medicine ,Genotype ,Sequence analysis ,Quantitative Trait Loci ,Mice, Inbred Strains ,Anxiety ,Dna variants ,Quantitative trait locus ,Biology ,Polymorphism, Single Nucleotide ,Article ,Open field ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Exome Sequencing ,Genetics ,Animals ,Humans ,Gene ,Genetics (clinical) ,Ecology, Evolution, Behavior and Systematics ,Whole genome sequencing ,Mice, Inbred BALB C ,Chromosome Mapping ,Computational Biology ,Genomics ,Anxiety Disorders ,Rats ,Mice, Inbred C57BL ,Disease Models, Animal ,Phenotype ,030104 developmental biology ,Strain distribution ,Open Field Test ,Functional genomics ,030217 neurology & neurosurgery - Abstract
We conducted whole-genome sequencing of four inbred mouse strains initially selected for high (H1, H2) or low (L1, L2) open-field activity (OFA), and then examined strain distribution patterns for all DNA variants that differed between their BALB/cJ and C57BL/6J parental strains. Next, we assessed genome-wide sharing (3,678,826 variants) both between and within the High and Low Activity strains. Results suggested that about 10% of these DNA variants may be associated with OFA, and clearly demonstrated its polygenic nature. Finally, we conducted bioinformatic analyses of functional genomics data from mouse, rat, and human to refine previously identified quantitative trait loci (QTL) for anxiety-related measures. This combination of sequence analysis and genomic-data integration facilitated refinement of previously intractable QTL findings, and identified possible genes for functional follow-up studies.
- Published
- 2020
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