1. Specification of diverse cell types during early neurogenesis of the mouse cerebellum
- Author
-
Elliott M Wilion, John W Wizeman, Qiuxia Guo, and James Y. H. Li
- Subjects
0301 basic medicine ,Cerebellum ,Mouse ,neural progenitors ,cerebellar nuclei ,Mice ,0302 clinical medicine ,Biology (General) ,Rhombic lip ,cell fate specification ,Neurons ,0303 health sciences ,General Neuroscience ,Neurogenesis ,Gene Expression Regulation, Developmental ,Embryo ,Cell Differentiation ,General Medicine ,medicine.anatomical_structure ,Medicine ,Single-Cell Analysis ,Research Article ,Cell type ,QH301-705.5 ,Science ,Embryonic Development ,Biology ,Cell fate determination ,organizer ,General Biochemistry, Genetics and Molecular Biology ,Purkinje neurons ,03 medical and health sciences ,medicine ,Animals ,Cell Lineage ,030304 developmental biology ,General Immunology and Microbiology ,Sequence Analysis, RNA ,Embryo, Mammalian ,Embryonic stem cell ,030104 developmental biology ,single-cell transcriptomics ,Neuroscience ,Developmental biology ,030217 neurology & neurosurgery ,Developmental Biology ,Transcription Factors - Abstract
SUMMARYWe applied single-cell RNA sequencing to profile genome-wide gene expression in about 9,400 individual cerebellar cells from the mouse embryo at embryonic day 13.5. Reiterative clustering identified the major cerebellar cell types and subpopulations of different lineages. Through pseudotemporal ordering to reconstruct developmental trajectories, we identified novel transcriptional programs controlling cell fate specification of populations arising from the ventricular zone and the anterior rhombic lip, two distinct germinal zones of the embryonic cerebellum. Together, our data revealed cell-specific markers for studying the cerebellum, important specification decisions, and a number of previously unknown subpopulations that may play an integral role in the formation and function of the cerebellum. Importantly, we identified a potential mechanism of vermis formation, which is affected by multiple congenital cerebellar defects. Our findings will facilitate new discovery by providing insights into the molecular and cell type diversity in the developing cerebellum.
- Published
- 2019