1. Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis
- Author
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Qian Liu, Jeffrey M. Granja, Kun Qu, Ansuman T. Satpathy, Karen Tolentino, Chuang Guo, Wen Zhang, Oliver Distler, Lisa C. Zaba, Rui Li, Kun Li, Jun Lin, Lorinda Chung, Gabriela Kania, Howard Y. Chang, Michelle Longmire, David Fiorentino, University of Zurich, Qu, Kun, and Chang, Howard Y
- Subjects
0301 basic medicine ,Epigenomics ,Cell type ,Science ,General Physics and Astronomy ,610 Medicine & health ,1600 General Chemistry ,Autoimmunity ,Disease ,medicine.disease_cause ,Dendritic cells ,General Biochemistry, Genetics and Molecular Biology ,Article ,Pathogenesis ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,1300 General Biochemistry, Genetics and Molecular Biology ,Fibrosis ,Medicine ,Epigenetics ,lcsh:Science ,skin and connective tissue diseases ,Multidisciplinary ,integumentary system ,business.industry ,10051 Rheumatology Clinic and Institute of Physical Medicine ,General Chemistry ,Epigenome ,medicine.disease ,3100 General Physics and Astronomy ,Chromatin ,030104 developmental biology ,030220 oncology & carcinogenesis ,Immunology ,lcsh:Q ,business - Abstract
Systemic sclerosis (SSc) is a disease at the intersection of autoimmunity and fibrosis. However, the epigenetic regulation and the contributions of diverse cell types to SSc remain unclear. Here we survey, using ATAC-seq, the active DNA regulatory elements of eight types of primary cells in normal skin from healthy controls, as well as clinically affected and unaffected skin from SSc patients. We find that accessible DNA elements in skin-resident dendritic cells (DCs) exhibit the highest enrichment of SSc-associated single-nucleotide polymorphisms (SNPs) and predict the degrees of skin fibrosis in patients. DCs also have the greatest disease-associated changes in chromatin accessibility and the strongest alteration of cell–cell interactions in SSc lesions. Lastly, data from an independent cohort of patients with SSc confirm a significant increase of DCs in lesioned skin. Thus, the DCs epigenome links inherited susceptibility and clinically apparent fibrosis in SSc skin, and can be an important driver of SSc pathogenesis., Systemic sclerosis (SSc) is a disease with manifestation in the skin and immune etiology, but the pathogenic immune cell types remain unidentified. Here the authors use ATAC-seq to profile chromatin landscapes of skin samples from patients with SSc to implicate skin dendritic cells for having the strongest disease-associated epigenetic changes.
- Published
- 2020