1. Establishing a three-miRNA signature as a prognostic model for colorectal cancer through bioinformatics analysis
- Author
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Songmei Lu, Lu-Mi Huang, Nan Shan, Xingyue Chen, Hao Long, Huiwen Ma, and Yi-Ming Wang
- Subjects
Male ,Oncology ,Aging ,medicine.medical_specialty ,Multivariate statistics ,Colorectal cancer ,Datasets as Topic ,risk score ,Risk Assessment ,Internal medicine ,microRNA ,Biomarkers, Tumor ,medicine ,Humans ,prognostic model ,miRNA ,Framingham Risk Score ,business.industry ,Proportional hazards model ,Gene Expression Profiling ,Univariate ,Computational Biology ,Cancer ,Cell Biology ,Prognosis ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Survival Rate ,MicroRNAs ,ROC Curve ,Prognostic model ,Female ,Colorectal Neoplasms ,CCa ,business ,Research Paper - Abstract
Background Identification of more promising microRNAs (miRNAs) are being extensively studied with respect to colorectal cancer (CRC), since CRC is the leading cause of cancer deaths and most common malignant tumors worldwide. A series of colon cancer (CCa) samples from The Cancer Genome Atlas (TCGA) were analyzed to provide a new perspective into this field. Methods The expression of miRNAs, mRNAs and the clinical data of 437 CRC patients were downloaded from the TCGA database. The survival-related differentially expressed miRNAs (sDMIRs) and mRNAs were detected by COX regression analysis. The high-risk group and low-risk group were separated by the median risk score of the risk score model. The potential clinical characteristics of these sDMIRs were analyzed by R software. The potential molecular mechanisms of these sDMIRs were explored by computational biology. The expression levels of three sDMIRs were explored by qPCR in CRC samples. Results Three DMIRs (hsa-miR-21-3p, hsa-miR-194-3p and hsa-miR-891a-5p) correlated with the most remarkable prognostic values of CRC patients were selected to establish the risk score model (RSM) by univariate and multivariate COX regression analysis and the survival probability of the low-risk group was longer than that in the high-risk group. We detected the target genes of three sDMIRs and the potential molecular mechanisms of these sDMIRs. We further verified the high expression levels of hsa-miR-21-3p and hsa-miR-194-3p were associated with the early T-stages, while hsa-miR-891a-5p illustrated the reversed result. Conclusion Our study demonstrated three sDMIRs with significantly clinical values illustrated the potential predicting values in the prognosis of CRC patients. Our results may provide a new perspective for the diagnostic methods and treatment strategies in CRC patients.
- Published
- 2021