1. Prospective validation study of prognostic biomarkers to predict adverse outcomes in patients with COVID-19: A study protocol
- Author
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Velma Herwanto, Andrea De Maria, Benjamin Tang, Ya Wang, Michele Bedognetti, Tim N Kwan, Yoann Zerbib, Nicholas P. West, Allan W. Cripps, Paolo Cremonesi, Marek Nalos, Gunawan Gunawan, Maryam Shojaei, Gabriele Zoppoli, Thomas Karvunidis, Darawan Rinchai, Alberto Ballestrero, Stephen P J Macdonald, Jonathan R. Iredell, Martin Matejovic, Ali Afrasiabi, Stephen Weng, Win Sen Kuan, Klaus Schughart, Amanda J. Cox, Davide Bedognetti, Anthony S. McLean, Damien Chaussabel, and HZI,Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7,38124 Braunschweig, Germany.
- Subjects
Male ,Time Factors ,lcsh:Medicine ,immunology ,0302 clinical medicine ,Positive predicative value ,Research Methods ,Outpatient clinic ,030212 general & internal medicine ,Prospective Studies ,Prospective cohort study ,0303 health sciences ,Emergency Service ,General Medicine ,Middle Aged ,Prognosis ,Viral pneumonia ,Biomarker (medicine) ,Female ,medicine.symptom ,Emergency Service, Hospital ,adult intensive & critical care ,COVID-19 ,molecular diagnostics ,Adult ,Biomarkers ,Critical Illness ,Follow-Up Studies ,Humans ,Triage ,Pandemics ,SARS-CoV-2 ,medicine.medical_specialty ,Asymptomatic ,03 medical and health sciences ,Hospital ,medicine ,030306 microbiology ,business.industry ,lcsh:R ,Bacterial pneumonia ,medicine.disease ,Coronavirus ,Emergency medicine ,business - Abstract
IntroductionAccurate triage is an important first step to effectively manage the clinical treatment of severe cases in a pandemic outbreak. In the current COVID-19 global pandemic, there is a lack of reliable clinical tools to assist clinicians to perform accurate triage. Host response biomarkers have recently shown promise in risk stratification of disease progression; however, the role of these biomarkers in predicting disease progression in patients with COVID-19 is unknown. Here, we present a protocol outlining a prospective validation study to evaluate the biomarkers’ performance in predicting clinical outcomes of patients with COVID-19.Methods and analysisThis prospective validation study assesses patients infected with COVID-19, in whom blood samples are prospectively collected. Recruited patients include a range of infection severity from asymptomatic to critically ill patients, recruited from the community, outpatient clinics, emergency departments and hospitals. Study samples consist of peripheral blood samples collected into RNA-preserving (PAXgene/Tempus) tubes on patient presentation or immediately on study enrolment. Real-time PCR (RT-PCR) will be performed on total RNA extracted from collected blood samples using primers specific to host response gene expression biomarkers that have been previously identified in studies of respiratory viral infections. The RT-PCR data will be analysed to assess the diagnostic performance of individual biomarkers in predicting COVID-19-related outcomes, such as viral pneumonia, acute respiratory distress syndrome or bacterial pneumonia. Biomarker performance will be evaluated using sensitivity, specificity, positive and negative predictive values, likelihood ratios and area under the receiver operating characteristic curve.Ethics and disseminationThis research protocol aims to study the host response gene expression biomarkers in severe respiratory viral infections with a pandemic potential (COVID-19). It has been approved by the local ethics committee with approval number 2020/ETH00886. The results of this project will be disseminated in international peer-reviewed scientific journals.
- Published
- 2021