1. Epigenetic readers and lung cancer: the rs2427964C>T variant of the bromodomain and extraterminal domain gene BRD3 is associated with poorer survival outcome in NSCLC
- Author
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Seung Soo Yoo, Eung Bae Lee, Jaehee Lee, Sanghoon Jheon, Won Kee Lee, Hyewon Seo, Sukki Cho, Chang Ho Kim, Sook Kyung Do, Seung Ick Cha, Shin Yup Lee, Yong Hoon Lee, Jin Eun Choi, Mi Jeong Hong, Jae Yong Park, Hyo-Gyoung Kang, Sun Ha Choi, and Jang Hyuck Lee
- Subjects
Cancer Research ,Linkage disequilibrium ,Lung Neoplasms ,Biology ,Epigenesis, Genetic ,Carcinoma, Non-Small-Cell Lung ,Genetics ,medicine ,Humans ,Epigenetics ,Allele ,Lung cancer ,Research Articles ,RC254-282 ,Gene knockdown ,epigenetics ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Promoter ,General Medicine ,Azepines ,Triazoles ,medicine.disease ,BET genes ,Bromodomain ,lung cancer ,Oncology ,Cohort ,Cancer research ,Molecular Medicine ,prognosis ,polymorphisms ,Research Article ,Transcription Factors - Abstract
Bromodomain and extraterminal domain (BET) proteins are epigenetic readers that regulate gene expression. We investigated whether variants in BET genes are associated with survival outcomes for lung cancer. To do this, the associations between 77 variants in BET family genes and survival outcomes were analyzed in 773 non‐small‐cell lung cancer (NSCLC) patients who underwent surgery (349 and 424 patients in the discovery and validation cohorts, respectively). We found that six variants were significantly associated with overall survival (OS) in the discovery cohort, and one variant (rs2506711C>T) was replicated in the validation cohort. BRD3 rs2506711C>T is located in the repressed area and has a strong linkage disequilibrium with rs2427964C>T in the promoter region. BRD3 rs2427964C>T was significantly associated with worse OS in the discovery cohort, validation cohort, and combined analysis. In a luciferase assay, promoter activity in the BRD3 rs2427964 T allele was significantly higher than that in the BRD3 rs2427964 C allele, which selectively bound with the transcriptional repressor SIN3A. Knockdown of BRD3 with BRD3‐specific siRNA decreased the proliferation and migration of lung cancer cells while also increasing the rate of apoptosis. These results suggest that BRD3 rs2427964C>T increases BRD3 expression through increased promoter activity, which is associated with poor prognosis for lung cancer., In this study, we investigated the association of BET gene variants with survival of patients with non‐small‐cell lung cancer (NSCLC). We observed that the rs2427964C>T SNP in the BRD3 promoter region was associated with poorer survival outcome. BRD3 promoter activity was higher in rs2427964_T than in rs2427964_C, which selectively bound with the transcriptional repressor SIN3A. Additionally, BRD3 silencing decreased the proliferation and migration of NSCLC cells. Our data suggest that elevated BRD3 expression regulated by rs2427964C>T leads to reduced overall survival in patients with NSCLC.
- Published
- 2022