1. Transcriptomic-based clustering of advanced atherosclerotic plaques identifies subgroups of plaques with differential underlying biology that associate with clinical presentation
- Author
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Koen H.M. Prange, Chani J. Hodonsky, Dominique P.V. de Kleijn, Gary K. Owens, Erik S.G. Stroes, Robin J. G. Hartman, Aloke V. Finn, G.J. de Borst, Nathalie Timmerman, Renu Virmani, Eleftherios Pavlos, Joost M. Mekke, Nicholas J. Leeper, Marie A.C. Depuydt, Clint L. Miller, Mete Civelek, Maarten C. Verwer, Gerard Pasterkamp, Arjan Boltjes, Michal Mokry, Johan Kuiper, E. Nagyova, Farahnaz Waissi, K. Cui, M. D. Khan, E. Diez Benavente, Heribert Schunkert, Claudia Monaco, Adam W. Turner, Evangelos Andreakos, M. de Winther, N. A. M. van den Dungen, Nico Lansu, S.W. Van Der Laan, Folkert W. Asselbergs, H.M. den Ruijter, and Lotte Slenders
- Subjects
Pathology ,medicine.medical_specialty ,Cell ,Coronary ischemia ,Biology ,medicine.disease ,Phenotype ,Thrombosis ,Transcriptome ,medicine.anatomical_structure ,Gene expression ,medicine ,Neutrophil degranulation ,Gene - Abstract
Histopathological studies have revealed key processes of atherosclerotic plaque thrombosis. However, the diversity and complexity of lesion types highlight the need for improved sub- phenotyping. We hypothesized that unbiased clustering of plaques based on gene expression results in an alternative categorization of late-stage atherosclerotic lesions.We analyzed the gene expression profiles of 654 advanced human carotid plaques. The unsupervised, transcriptome-driven clustering revealed five dominant plaque types. These novel plaque phenotypes associated with clinical presentation (pIn conclusion, the definition of the plaque at risk for a thrombotic event can be fine-tuned by in- depth transcriptomic based phenotyping. These differential plaque phenotypes prove clinically relevant for both carotid and coronary artery plaques and point to differential underlying biology of symptomatic lesions.
- Published
- 2021