1. Contribution of Large Genomic Rearrangements in Italian Lynch Syndrome Patients: Characterization of a Novel Alu-Mediated Deletion
- Author
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Marina De Rosa, Angela Cavallo, Paola Izzo, Bianca Cudia, Francesca Duraturo, Raffaella Liccardo, G Diana, Duraturo, Francesca, Angela, Cavallo, Liccardo, Raffaella, Bianca, Cudia, DE ROSA, Marina, Giuseppe, Diana, Izzo, Paola, Duraturo, F, Cavallo, A, Liccardo, R, Cudia, BM, De Rosa, M, Diana, G, and Izzo, P
- Subjects
Male ,congenital, hereditary, and neonatal diseases and abnormalities ,genomic rearragement ,Article Subject ,Population ,lcsh:Medicine ,Settore BIO/11 - Biologia Molecolare ,Biology ,MLH1 ,General Biochemistry, Genetics and Molecular Biology ,novel Alu-mediated deletion ,Alu Elements ,medicine ,Humans ,education ,neoplasms ,Adaptor Proteins, Signal Transducing ,Sequence Deletion ,Gene Rearrangement ,Genetics ,education.field_of_study ,General Immunology and Microbiology ,Point mutation ,lcsh:R ,Nuclear Proteins ,Lynch syndrome ,genomic rearragements ,nutritional and metabolic diseases ,General Medicine ,Gene rearrangement ,medicine.disease ,Colorectal Neoplasms, Hereditary Nonpolyposis ,Molecular biology ,digestive system diseases ,DNA-Binding Proteins ,MSH6 ,Settore MED/18 - Chirurgia Generale ,MutS Homolog 2 Protein ,Italy ,MSH2 ,Female ,DNA mismatch repair ,MutL Protein Homolog 1 ,Research Article - Abstract
Lynch syndrome is associated with germ-line mutations in the DNA mismatch repair (MMR) genes, mainlyMLH1andMSH2. Most of the mutations reported in these genes to date are point mutations, small deletions, and insertions. Large genomic rearrangements in the MMR genes predisposing to Lynch syndrome also occur, but the frequency varies depending on the population studied on average from 5 to 20%. The aim of this study was to examine the contribution of large rearrangements in theMLH1andMSH2genes in a well-characterised series of 63 unrelated Southern Italian Lynch syndrome patients who were negative for pathogenic point mutations in theMLH1,MSH2, andMSH6genes. We identified a large novel deletion in theMSH2gene, including exon 6 in one of the patients analysed (1.6% frequency). This deletion was confirmed and localised by long-range PCR. The breakpoints of this rearrangement were characterised by sequencing. Further analysis of the breakpoints revealed that this rearrangement was a product of Alu-mediated recombination. Our findings identified a novel Alu-mediated rearrangement withinMSH2gene and showed that large deletions or duplications inMLH1andMSH2genes are low-frequency mutational events in Southern Italian patients with an inherited predisposition to colon cancer.
- Published
- 2013
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