Using radioactive in situ hybridization histochemistry, we examined the topographical patterns of expression of the messenger RNA encoding a glutamate-binding protein ( N -methyl- d -aspartate receptor glutamate-binding protein in rat; NMDARgbs) in the central nervous system of the rat. Expression patterns of N -methyl- d -aspartate receptor glutamate-binding protein were compared with those of N -methyl- d -aspartate receptor subunit 1 (NMDAR1) of the N -methyl- d -aspartate receptor on adjacent sections. N -methyl- d -aspartate receptor glutamate-binding protein is not expressed in glial cells. The expression of both N -methyl- d -aspartate receptor glutamate-binding protein and N -methyl- d -aspartate receptor subunit 1 was observed in virtually all neurons throughout the central nervous system. The mean level of N -methyl- d -aspartate receptor subunut 1 expression was higher than that of N -methyl- d -aspartate receptor glutamate-binding protein. Similar topographical patterns of expression of N -methyl- d -aspartate receptor glutamate-binding protein and N -methyl- d -aspartate receptor were observed in most regions, except in discrete thalamic, hypothalamic and brainstem nuclei. Concomitantly for N -methyl- d -aspartate receptor glutamate-binding protein and N -methyl- d -aspartate receptor subunit 1, the highest expression levels were distributed in the mitral layer of main and accessory olfactory bulbs, granule cell layer of the dentate gyrus, polymorphic and pyramidal layers of CA1–3 fields of Ammon's horn. A slightly less prominent expression was observed in the glomerular and granule cell layers of main and accessory olfactory bulbs, anterior olfactory nucleus, layer 2 of piriform cortex, olfactory tubercle and taenia tecta. In the cerebellum, the prominent level of N -methyl- d -aspartate receptor glutamate-binding protein expression was slightly higher in the Purkinje cell layer than in the granule cell layer, an opposite pattern being observed for N -methyl- d -aspartate receptor subunit 1. A moderately high expression level of both messenger RNAs was observed in the medial septal nucleus, nucleus of the diagonal band of Broca, dorsal part of the endopiriform nucleus, and in the anteroventral and anterolateral parts of the bed nucleus of the stria terminalis. In the neocortex, the mean expression level of N -methyl- d -aspartate receptor glutamate-binding protein is moderate, while the mean level of N -methyl- d -aspartate receptor subunit 1 expression is high. With both probes, layer IV is slightly less labeled than the other layers. In layer V, N -methyl- d -aspartate receptor subunit 1 expression is slightly lower than in layers II and III, whereas N -methyl- d -aspartate receptor glutamate-binding protein expression is slightly higher. A moderately high intensity of signal obtained with both probes was observed in the anterodorsal thalamic nucleus, medial habenular nucleus, in the magnocellular, ventromedial and lateral mammillary nuclei of the hypothalamus, and in the pars compacta of the substantia nigra, red nucleus, pontine nuclei, tegmental and lateral reticular nuclei, oculomotor and motor trigeminal nuclei, nucleus of the solitary tract, hypoglossal nucleus, dorsal raphe´, nucleus of the trapezoid body, external cuneate nucleus and motorneurons of the ventral horn. Weak to moderate levels of expression were observed with both probes in the other regions of the central nervous system. In the hypothalamus, a high expression level of N -methyl- d -aspartate receptor subunit 1 contrasted with a low expression level for N -methyl- d -aspartate receptor glutamate-binding protein in the suprachiasmatic, arcuate and tuberomammillary nuclei. Conversely, as a unique feature in the rat central nervous system, a moderately high level of expression of N -methyl- d -aspartate receptor glutamate-binding protein and a low expression level of N -methyl- d -aspartate receptor subunit 1 were observed in the parafascicular nucleus of the thalamus. These findings show that the N -methyl- d -aspartate receptor glutamate-binding protein is expressed throughout the rat central nervous system, and that the topographical patterns of expression of this protein are closely similar but not identical to those of N -methyl- d -aspartate receptor. The high level of expression of both N -methyl- d -aspartate receptor glutamate-binding protein and N -methyl- d -aspartate receptor subunit 1 in brain areas that display high sensitivity to N -methyl- d -aspartate is consistent with the involvement of N -methyl- d -aspartate receptor glutamate-binding protein in mechanisms of N -methyl- d -aspartate receptor-mediated excitotoxicity.