1. Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans
- Author
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Hagit Philip, Gur Yaari, Kristofor Adams, Irun R. Cohen, Raanan Margalit, Moriah Gidoni, Francois Vigneault, Miri Gordin, Christopher Clouser, Sol Efroni, and Alona Zilberberg
- Subjects
0301 basic medicine ,medicine.medical_treatment ,T-Lymphocytes ,Cell ,Immune Receptors ,Biochemistry ,Lung and Intrathoracic Tumors ,White Blood Cells ,Mice ,0302 clinical medicine ,Animal Cells ,Breast Tumors ,Databases, Genetic ,Medicine and Health Sciences ,Biology (General) ,Receptor ,Cells, Cultured ,Immune System Proteins ,Ecology ,T Cells ,Genetically Modified Organisms ,High-Throughput Nucleotide Sequencing ,Animal Models ,medicine.anatomical_structure ,Computational Theory and Mathematics ,Oncology ,Experimental Organism Systems ,030220 oncology & carcinogenesis ,Modeling and Simulation ,Biomarker (medicine) ,Engineering and Technology ,Female ,Cellular Types ,Genetic Engineering ,Research Article ,Biotechnology ,Signal Transduction ,QH301-705.5 ,Immune Cells ,Immunology ,Receptors, Antigen, T-Cell ,Mouse Models ,Bioengineering ,Breast Neoplasms ,Mice, Transgenic ,chemical and pharmacologic phenomena ,Biology ,Research and Analysis Methods ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Immune system ,Breast cancer ,Model Organisms ,Antigen ,Breast Cancer ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology Techniques ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Blood Cells ,Genetically Modified Animals ,T-cell receptor ,Cancers and Neoplasms ,Biology and Life Sciences ,Proteins ,Immunotherapy ,Cell Biology ,medicine.disease ,Complementarity Determining Regions ,T Cell Receptors ,030104 developmental biology ,Cancer research ,Animal Studies ,Cloning - Abstract
The partial success of tumor immunotherapy induced by checkpoint blockade, which is not antigen-specific, suggests that the immune system of some patients contain antigen receptors able to specifically identify tumor cells. Here we focused on T-cell receptor (TCR) repertoires associated with spontaneous breast cancer. We studied the alpha and beta chain CDR3 domains of TCR repertoires of CD4 T cells using deep sequencing of cell populations in mice and applied the results to published TCR sequence data obtained from human patients. We screened peripheral blood T cells obtained monthly from individual mice spontaneously developing breast tumors by 5 months. We then looked at identical TCR sequences in published human studies; we used TCGA data from tumors and healthy tissues of 1,256 breast cancer resections and from 4 focused studies including sequences from tumors, lymph nodes, blood and healthy tissues, and from single cell dataset of 3 breast cancer subjects. We now report that mice spontaneously developing breast cancer manifest shared, Public CDR3 regions in both their alpha and beta and that a significant number of women with early breast cancer manifest identical CDR3 sequences. These findings suggest that the development of breast cancer is associated, across species, with biomarker, exclusive TCR repertoires., Author summary More than 1,100 cancer treatments are currently in clinical testing. Of these, 295 are immune-oncology medicines and vaccines. For Checkpoint Immunotherapy alone, 52,539 patients were enrolled in 2017. Of these treatments, 108 are for breast cancer, the leading cancer diagnosed in women. Although checkpoint immunotherapy has yet to be proven beneficial in most types of breast cancer, current observations of which specific T cell go into the tumor, and how these cells are connected to the response to treatment, have lead to a new understating of the role of the immune system. Yet, and in spite of this intense research into the role of T cells in tumors, very little is known about how clones of T cells behave during tumor formation. The paper we present here studies this clonal behavior over time. We study it during mammary tumor development in mice. We see that a set of T cell clones, which comes from a diversity of different nucleotide sequences, stands out in its behavior compared with other T cell clones. Importantly, we show that these mouse T cell clones have a strong connection to human breast cancer. The specific identification of a subset of T cell clones, together with the behavior of these clones over time, is critical to our understanding of the effect of modifications to the immune system, such as the modifications made by immunotherapy treatments, and to our understanding of how to better control the behavior of the immune system.
- Published
- 2021