1. CRISPR/Cas9/AAV9-mediated in vivo editing identifies MYC regulation of 3D genome in skeletal muscle stem cell
- Author
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Yuying Li, Huating Wang, Yingzhe Ding, Yu Zhao, Karl K. So, Xiaona Chen, Jie Yuan, Hao Sun, Xianlu L. Peng, Liangqiang He, and Zhiming He
- Subjects
Satellite Cells, Skeletal Muscle ,Genes, myc ,MYC ,Biology ,Biochemistry ,Article ,3D chromatin ,Mice ,Gene expression ,Genetics ,medicine ,Animals ,CRISPR ,Guide RNA ,CRISPR/Cas9 ,muscle stem cell ,Transcription factor ,MyoD Protein ,Gene Editing ,Genome ,integumentary system ,Cas9 ,Regeneration (biology) ,Skeletal muscle ,Cell Biology ,Chromatin ,Cell biology ,medicine.anatomical_structure ,Gene Expression Regulation ,nervous system ,Proto-Oncogene Proteins c-bcl-6 ,Nucleic Acid Conformation ,CRISPR-Cas Systems ,Stem cell ,tissues ,RNA, Guide, Kinetoplastida ,Transcription Factors ,Developmental Biology - Abstract
Summary Skeletal muscle satellite cells (SCs) are stem cells responsible for muscle development and regeneration. Although CRISPR/Cas9 has been widely used, its application in endogenous SCs remains elusive. Here, we generate mice expressing Cas9 in SCs and achieve robust editing in juvenile SCs at the postnatal stage through AAV9-mediated short guide RNA (sgRNA) delivery. Additionally, we reveal that quiescent SCs are resistant to CRISPR/Cas9-mediated editing. As a proof of concept, we demonstrate efficient editing of master transcription factor (TF) Myod1 locus using the CRISPR/Cas9/AAV9-sgRNA system in juvenile SCs. Application on two key TFs, MYC and BCL6, unveils distinct functions in SC activation and muscle regeneration. Particularly, we reveal that MYC orchestrates SC activation through regulating 3D genome architecture. Its depletion results in strengthening of the topologically associating domain boundaries thus may affect gene expression. Altogether, our study establishes a platform for editing endogenous SCs that can be harnessed to elucidate the functionality of key regulators governing SC activities., Highlights • CRISPR/Cas9/AAV9-sgRNA system yields robust editing in juvenile SCs • Quiescent SCs are resistant to CRISPR/Cas9-mediated in vivo editing • Key TFs play diversified functions during SC early activation • MYC promotes SC activation through impinging on 3D chromatin architecture, In this article, Wang and colleagues generate a CRISPR/Cas9/AAV9-sgRNA in vivo genome editing system to achieve robust editing in juvenile satellite cells (SCs). Application of the system reveals diversified functions of key transcription factors (TFs) during SC activation and uncovers that MYC promotes SC activation through regulating 3D genome architecture. Quiescent SCs, however, are resistant to the in vivo editing.
- Published
- 2021
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