32 results on '"Yuki Naito"'
Search Results
2. Cardiopulmonary arrest caused by nafamostat mesylate during hemodialysis
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Nobuki Shioya, Nozomu Inoue, Hiroki Sato, Motoko Iwahara, Tomohiro Sato, Yuki Tsukamoto, Yuki Naito, Kohji Hazama, and Yasuo Shichinohe
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and anaphylaxis ,cardiopulmonary arrest ,dialysis‐related adverse reactions ,hemodialysis ,nafamostat mesylate ,Medicine ,Medicine (General) ,R5-920 - Abstract
Abstract Dialysis‐related adverse reactions can be serious and difficult to predict. In our case, nafamostat mesylate (NM) was thought to be the cause of cardiopulmonary arrest (CPA) due to NM‐induced anaphylaxis but was not reflected in the allergy tests. Rare but life‐threatening drawbacks occur immediately after hemodialysis initiation.
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- 2022
- Full Text
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3. BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]
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Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, and Toshihisa Takagi
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Medicine ,Science - Abstract
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.
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- 2020
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4. E-cadherin is transcriptionally activated via suppression of ZEB1 transcriptional repressor by small RNA-mediated gene silencing.
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Minami Mazda, Kenji Nishi, Yuki Naito, and Kumiko Ui-Tei
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Medicine ,Science - Abstract
RNA activation has been reported to be induced by small interfering RNAs (siRNAs) that act on the promoters of several genes containing E-cadherin. In this study, we present an alternative mechanism of E-cadherin activation in human PC-3 cells by siRNAs previously reported to possess perfect-complementary sequences to E-cadherin promoter. We found that activation of E-cadherin can be also induced via suppression of ZEB1, which is a transcriptional repressor of E-cadherin, by seed-dependent silencing mechanism of these siRNAs. The functional seed-complementary sites of the siRNAs were found in the coding region in addition to the 3' untranslated region of ZEB1 mRNA. Promoter analyses indicated that E-boxes, which are ZEB1-binding sites, in the upstream promoter region are indispensable for E-cadherin transcription by the siRNAs. Thus, the results caution against ignoring siRNA seed-dependent silencing effects in genome-wide transcriptional regulation. In addition, members of miR-302/372/373/520 family, which have the same seed sequences with one of the siRNAs containing perfect-complementarity to E-cadherin promoter, are also found to activate E-cadherin transcription. Thus, E-cadherin could be upregulated by the suppression of ZEB1 transcriptional repressor by miRNAs in vivo.
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- 2011
- Full Text
- View/download PDF
5. Reduction in minute alveolar ventilation causes hypercapnia in ventilated neonates with respiratory distress
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Takuyo Kanayama, Kazumasa Kitamura, Yuki Naito, Utsuki Matsumura, Masashi Zuiki, Hiroshi Komatsu, and Shinichiro Tsurukawa
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Respiratory rate ,Dead space ,Hypercapnia ,03 medical and health sciences ,Neonatal intensive care unit ,0302 clinical medicine ,030225 pediatrics ,Tidal Volume ,Alveolar ventilation ,Humans ,Medicine ,030212 general & internal medicine ,Normocapnia ,Alveolar dead space ,Tidal volume ,Physiological dead space ,Respiratory Distress Syndrome ,Respiratory distress ,business.industry ,Infant ,Gestational age ,Respiratory Dead Space ,Carbon Dioxide ,Respiration, Artificial ,respiratory tract diseases ,Anesthesia ,Pediatrics, Perinatology and Child Health ,Original Article ,Volumetric capnography ,medicine.symptom ,business ,Respiratory minute volume ,circulatory and respiratory physiology - Abstract
Hypercapnia occurs in ventilated infants even if tidal volume (VT) and minute ventilation (VE) are maintained. We hypothesised that increased physiological dead space (Vd,phys) caused decreased minute alveolar ventilation (VA; alveolar ventilation (VA) × respiratory rate) in well-ventilated infants with hypercapnia. We investigated the relationship between dead space and partial pressure of carbon dioxide (PaCO2) and assessed VA. Intubated infants (n = 33; mean birth weight, 2257 ± 641 g; mean gestational age, 35.0 ± 3.3 weeks) were enrolled. We performed volumetric capnography (Vcap), and calculated Vd,phys and VA when arterial blood sampling was necessary. PaCO2 was positively correlated with alveolar dead space (Vd,alv) (r = 0.54, p < 0.001) and Vd,phys (r = 0.48, p < 0.001), but not Fowler dead space (r = 0.14, p = 0.12). Normocapnia (82 measurements; 35 mmHg ≤ PaCO2 < 45 mmHg) and hypercapnia groups (57 measurements; 45 mmHg ≤ PaCO2) were classified. The hypercapnia group had higher Vd,phys (median 0.57 (IQR, 0.44-0.67)) than the normocapnia group (median Vd,phys/VT = 0.46 (IQR, 0.37-0.58)], with no difference in VT. The hypercapnia group had lower VA (123 (IQR, 87-166) ml/kg/min) than the normocapnia group (151 (IQR, 115-180) ml/kg/min), with no difference in VE.Conclusion: Reduction of VA in well-ventilated neonates induces hypercapnia, caused by an increase in Vd,phys. What is Known: • Volumetric capnography based on ventilator graphics and capnograms is a useful tool in determining physiological dead space of ventilated infants and investigating the cause of hypercapnia. What is New: • This study adds evidence that reduction in minute alveolar ventilation causes hypercapnia in ventilated neonates.
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- 2020
6. Assessment of the local clonal spread of Streptococcus pneumoniae serotype 12F caused invasive pneumococcal diseases among children and adults
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Akemi Ozaki, Akihiro Ijichi, Yuki Shirouzu, Noriko Nakanishi, Takeshi Yonezawa, Natsuki Hama, Tomotada Iwamoto, Yuki Naito, Shinobu Tanaka, and Ryohei Nomoto
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0301 basic medicine ,Serotype ,Adult ,Male ,Streptococcus pneumoniae serotype ,Pneumococcal disease ,Adolescent ,Genotype ,030106 microbiology ,Single-nucleotide polymorphism ,Bacteremia ,Biology ,medicine.disease_cause ,Serogroup ,Pneumococcal Infections ,Meningitis, Bacterial ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Japan ,Streptococcus pneumoniae ,medicine ,Humans ,lcsh:RC109-216 ,030212 general & internal medicine ,Serotyping ,Child ,Aged ,Aged, 80 and over ,Molecular Epidemiology ,lcsh:Public aspects of medicine ,Public Health, Environmental and Occupational Health ,Infant, Newborn ,Outbreak ,Infant ,lcsh:RA1-1270 ,General Medicine ,Middle Aged ,Virology ,Infectious Diseases ,Child, Preschool ,Multilocus sequence typing ,Female ,Quellung reaction ,Multilocus Sequence Typing - Abstract
Background: We conducted active surveillance to elucidate the distribution of Streptococcus pneumoniae serotypes causing invasive pneumococcal disease (IPD) and clarified the genetic relatedness among the isolates in Kobe City, Japan. Methods: Forty-five IPD-causing S. pneumoniae strains were analyzed from March 2016 to May 2018 through active surveillance in Kobe City, Hyogo, Japan. Serotypes were determined by multiplex serotyping PCR and the Quellung reaction with pneumococcal antisera. Fourteen Sp12F strains were subjected to whole-genome sequencing (WGS). Results: Among 45 isolates, the most frequent serotypes were 12F (n = 14, 31%), 24F (n = 5, 11%), and 10A (n = 4, 9%). Multilocus sequence typing (MLST) analysis of 14 isolates of Sp12F divided them into ST4846 (n = 4) and ST6495 (n = 10). WGS showed clonality of the 10 isolates of ST6495, with only 13 single nucleotide polymorphisms in the genomes. Meanwhile, ST4846 strains in Kobe differed from only the outbreak strains of Sp12F ST4846 in Tsuruoka, Japan, reported on 2018. Conclusions: Serotype monitoring showed Sp12F to be the predominant serotype in Kobe, and WGS revealed the clonal spread of Sp12F ST6495 in this city. Thus, the spread of Sp12F could become a serious public health problem in Japan, warranting thorough monitoring in future. Keywords: Streptococcus pneumoniae, Serotype, Sp12F, Whole-genome sequencing, Single nucleotide polymorphism
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- 2019
7. Intentional or unintentional drug poisoning in elderly people: retrospective observational study in a tertiary care hospital in Japan
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Yuka Morishita, Shinsuke Onishi, Akiko Oshiro, Yuki Naito, Nobuo Sakata, Satoshi Nara, Takafumi Shimizu, Hiroyuki Okamoto, and Takeshi Haoka
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medicine.medical_specialty ,geriatric ,Poison control ,030204 cardiovascular system & hematology ,Suicide prevention ,Occupational safety and health ,03 medical and health sciences ,0302 clinical medicine ,Injury prevention ,Medicine ,030212 general & internal medicine ,drug poisoning ,Benzodiazepine receptor agonist ,RC86-88.9 ,business.industry ,Medical record ,General Engineering ,Human factors and ergonomics ,Medical emergencies. Critical care. Intensive care. First aid ,Retrospective cohort study ,Original Articles ,Odds ratio ,intention ,Emergency medicine ,Original Article ,business ,hospitalization - Abstract
Aim Intentional or unintentional acute drug poisoning occurs even in elderly people, but little is known about the factors influencing the intention to poisoning. A retrospective study was undertaken to describe the characteristics of acute drug poisoning in elderly people according to whether the poisoning was intentional or unintentional and the responsible agents. Methods The study was carried out in a single tertiary hospital in Japan. A total of 145 patients aged ≥65 years who were transferred by an ambulance service and were diagnosed with acute drug poisoning were included. Medical records were used to collect information on the intention behind poisoning and the responsible agents. Patients were divided into two groups according to whether they experienced intentional or unintentional poisoning and were further classified according to the responsible agent. Multivariable logistic regression models were used to estimate the association between hospitalization for acute drug poisoning and the use of benzodiazepine receptor agonists (BzRAs). Results Poisoning was unintentional in 102 (70.3%) patients and intentional in 43 (29.7%) patients. In total, 65 (44.8%) patients required hospitalization. Among patients in the unintentional poisoning group, those using non-BzRAs were more likely to be hospitalized than those using BzRAs (odds ratio, 6.64; 95% confidence interval, 2.56-17.22). The length of hospital stay was significantly longer in the unintentional poisoning group than in the intentional poisoning group (13.9 vs. 6.2 days; P = 0.013). Conclusions The proportion of unintentional poisoning in the elderly is high, and particularly with respect to poisoning with non-BzRAs, the hospitalization rates are high.
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- 2019
8. In Vivo Effect of Bis(Maltolato)Zinc(II) Complex on Akt Phosphorylation in Adipose Tissues of Mice
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Hiroyuki Yasui, Yutaka Yoshikawa, Hiroaki Yamamoto, and Yuki Naito
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Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,chemistry.chemical_element ,Adipose tissue ,Zinc ,010501 environmental sciences ,01 natural sciences ,Biochemistry ,Inorganic Chemistry ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,In vivo ,Internal medicine ,Diabetes mellitus ,Organometallic Compounds ,medicine ,Animals ,Tissue Distribution ,Phosphorylation ,Glycogen synthase ,0105 earth and related environmental sciences ,Mice, Inbred ICR ,0303 health sciences ,Dose-Response Relationship, Drug ,Molecular Structure ,biology ,030302 biochemistry & molecular biology ,Biochemistry (medical) ,Skeletal muscle ,General Medicine ,medicine.disease ,Bioavailability ,medicine.anatomical_structure ,Endocrinology ,Adipose Tissue ,chemistry ,Isoflurane ,biology.protein ,Proto-Oncogene Proteins c-akt ,medicine.drug - Abstract
The risk of serious complication gradually increases as diabetes mellitus (DM) progresses. Thus, strategies for the prevention and delay of symptom progression are urgently needed. Previously, we synthesized zinc (Zn) complexes estimated to have a high bioavailability and evaluated their insulin-like anti-DM effects. However, in vivo studies of the effects of Zn compounds on the insulin signaling pathway and the molecular mechanisms underlying the anti-diabetic activities of Zn complexes were unresolved. In this study, we evaluated the effect of bis(maltolato)zinc(II) complex [Zn(mal)2] on male ICR mice (6-week-old) that received intraperitoneal (i.p.) injection of [Zn(mal)2]. The liver, skeletal muscle, and adipose tissues were collected from mice under anesthesia with isoflurane 40 or 90 min after i.p. injection. The [Zn(mal)2]-treatment did not affect Akt phosphorylation in the liver or skeletal muscle. In contrast, in adipose tissues, [Zn(mal)2]-treatment showed increased Akt phosphorylation at 40 min and 90 min after injection (p
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- 2019
9. A Cost-effectiveness Analysis of Sunitinib vs. Interferon-alpha in Patient with Advanced Renal Cell Carcinoma in Japan
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Yumiko Ogawa, Tomiko Sunaga, Masahiro Usuda, Kazuki Tomura, Tadanori Sasaki, Yuki Naito, Hiroyuki Sakamaki, Akiko Nagatani, Nao Akiyama, Mari Kogo, Tatsuya Kurihara, Haruaki Sasaki, and Tatsunori Murata
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Pharmacology ,Oncology ,medicine.medical_specialty ,Sunitinib ,business.industry ,Pharmaceutical Science ,Alpha interferon ,Cost-effectiveness analysis ,urologic and male genital diseases ,medicine.disease ,Molecular targeting ,Renal cell carcinoma ,Internal medicine ,medicine ,In patient ,business ,Medical expenses ,Medical costs ,health care economics and organizations ,medicine.drug - Abstract
Sunitinib has been shown to offer clinical benefits during the treatment of advanced renal cell carcinoma. However, molecular targeting drugs are expensive and can have a significant impact on medical expenses. The purpose of this study was to assess the cost-effectiveness of sunitinib as a first-line therapy compared with interferon-alpha (IFN-α) in metastatic renal cell carcinoma patients. A Markov model was used to show the clinical courses of patients with metastatic renal cell carcinoma who received sunitinib or IFN-α. The transition probabilities and utilities employed in this Markov model were derived from two sources. This study focused on the perspective of public healthcare payer, as only direct medical costs were estimated from the treatment schedule for metastatic renal cell cancer. In the cost-effectiveness analysis, outcomes were valued in terms of life years (LYs) and quality-adjusted life years (QALYs). We calculated the incremental cost-effectiveness ratio (ICER) during the cost-effectiveness analysis. The results were tested using Monte Carlo simulations. Sunitinib and IFN-α treatment resulted in LYs of 2.40 years and 2.03 years, QALYs of 1.58 and 1.25, and expected costs of 13,572,629 yen and 6,083,002 yen, respectively. As a result, the ICER associated with replacing IFN-α with sunitinib was 22,695,839 yen/QALYs. Our results suggest that compared with IFN-α, sunitinib prolongs LYs and QALYs, but the increases in quality achieved by sunitinib are more expensive than those produced by IFN-α.
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- 2018
10. Anti-hyperglycemic Effect of Long-Term Bis(hinokitiolato)zinc Complex ([Zn(hkt)2]) Ingestion on Insulin Resistance and Pancreatic Islet Cells Protection in Type 2 Diabetic KK-Ay Mice
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Yutaka Yoshikawa, Hiroyuki Yasui, Michiko Shintani, Yuki Naito, Shingo Kamoshida, and Naemi Kajiwara
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0301 basic medicine ,medicine.medical_specialty ,Pharmaceutical Science ,Adipose tissue ,chemistry.chemical_element ,030209 endocrinology & metabolism ,Zinc ,03 medical and health sciences ,0302 clinical medicine ,Insulin resistance ,In vivo ,Islet cells ,Internal medicine ,medicine ,Ingestion ,Pharmacology ,geography ,geography.geographical_feature_category ,General Medicine ,Islet ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Pancreas - Abstract
Zinc (Zn) is a trace element with anti-diabetes mellitus (anti-DM) effects. Zn complexes exhibit stronger insulin-like activity than Zn ions. Bis(hinokitiolato)zinc complex ([Zn(hkt)2]) was recently reported to be a potent anti-DM candidate. We examined the effects of [Zn(hkt)2] on insulin resistance and pancreatic islet cells through in vivo long-term ingestion studies. In an in vivo study, we performed 4-month long-term [Zn(hkt)2] administration experiments in KK-Ay mice as a type 2 DM animal model. Ingestion of [Zn(hkt)2] resulted in lower blood glucose levels compared with the non-treated KK-Ay mice (control group). Additionally, [Zn(hkt)2] treatment decreased plasma insulin concentration compared with that of the non-treated KK-Ay group. [Zn(hkt)2] treatment resulted in a significant suppression of islet cell enlargement and a significantly decreased number of insulin-positive cells compared with the non-treated KK-Ay control group. The [Zn(hkt)2] treatment group showed the increasing tendency in the amount of Zn levels in peripheral organs; liver, muscle, adipose, and pancreas, compared with the non-treated KK-Ay control group. However, the Zn level in the pancreas of the [Zn(hkt)2] treatment group did not show the significant increase compared with the non-treated KK-Ay control group. This accumulation of Zn in pancreas suggested that [Zn(hkt)2] mainly effects on the peripheral tissue, and [Zn(hkt)2] has the less effect on the pancreas directly. Thus, we concluded that [Zn(hkt)2] exerted the main effect on peripheral organs by ameliorating insulin resistance.
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- 2017
11. Effects of exercise on biological trace element concentrations and selenoprotein P expression in rats with fructose-induced glucose intolerance
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Keita Chikamoto, Asuka Uratani, Yutaka Yoshikawa, Hiroyuki Yasui, Namika Miya, Yuki Naito, and Keiji Terao
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0301 basic medicine ,medicine.medical_specialty ,medicine.medical_treatment ,Clinical Biochemistry ,Medicine (miscellaneous) ,medicine.disease_cause ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Downregulation and upregulation ,Internal medicine ,Casein ,Medicine ,Glycogen synthase ,030109 nutrition & dietetics ,Nutrition and Dietetics ,biology ,business.industry ,Selenoprotein P ,Insulin ,Fructose ,Lactic acid ,Endocrinology ,chemistry ,biology.protein ,Original Article ,030211 gastroenterology & hepatology ,business ,Oxidative stress - Abstract
In the present study, we investigated the effects of exercise intended to prevent or treat lifestyle-related diseases on the glucose tolerance, insulin level, lactic acid utilization, muscle glycogen synthesis, hepatic and renal oxidative stress, hepatic selenoprotein P and biological trace element levels in organs of obese, glucose-intolerant rats. We fed normal, healthy rats a 20% casein diet while the glucose-intolerant, obese rats received a high-fructose diet. They were forced to run for one hour per day, six days per week, for ten weeks. Exercise reduced visceral fat and ameliorated glucose tolerance in the high-fructose group, lowered blood lactic acid levels, improved lactic acid usage efficiency, and increased oxidative stress and hepatic levels of Mn, Fe, Cu, and Zn in the normal and high-fructose groups. Additionally, exercise significantly upregulated hepatic selenoprotein P expression in both groups, however, its effect was remarkable in healthy group. On the other hand, muscle glycogen synthesis was not markedly enhanced in high-fructose-diet rats but in normal-diet rats in response to exercise. It is concluded that exercise conditions rather than exercise load must be customized and optimized for each health and disease states in advance before starting exercise training intended to prevent or treat lifestyle-related diseases.
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- 2019
12. Pituitary apoplexy after cardiac surgery in a 14-year-old girl with Carney complex: a case report
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Hajime Hosoi, Jun Mori, Kazunori Tatsuzawa, Yuki Naito, Hisakazu Nakajima, Tokuo Mukai, Jun Tazoe, Akimasa Tomida, Shigeki Yagyu, and Tomoko Iehara
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medicine.medical_specialty ,Adenoma ,Adolescent ,Endocrinology, Diabetes and Metabolism ,Thyrotropin ,030209 endocrinology & metabolism ,Heart Neoplasms ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Pituitary adenoma ,medicine ,Humans ,Pituitary Neoplasms ,Cardiac Surgical Procedures ,Carney Complex ,Carney complex ,business.industry ,Insulin tolerance test ,Thyroid ,Pituitary tumors ,Myxoma ,Pituitary apoplexy ,medicine.disease ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Radiology ,Growth Hormone-Secreting Pituitary Adenoma ,Neoplasm Recurrence, Local ,business ,Pituitary Apoplexy - Abstract
A 14-year-old girl was referred to our department because of headache and visual impairment following the resection of recurrent cardiac myxoma. Head magnetic resonance imaging (MRI) scan detected an intra- and supra-sellar tumor. Moreover, the patient showed the presence of spotty skin pigmentations on her cheeks and lower lip. Blood examination revealed hypothyrotropinemia, and ultrasonography results revealed multiple thyroid nodules. She was diagnosed with Carney complex (CNC). Her pituitary tumor was suspected as growth hormone (GH)-secreting adenoma, because overgrowth was observed in the patient. However, biochemical examinations, including oral glucose tolerance test, failed to show the characteristic findings of GH-secreting adenoma. In contrast, insulin tolerance test showed GH deficiency. Her visual impairment improved without performing decompression surgery, and the tumor size decreased, as per the MRI findings. Based on clinical course, the patient was diagnosed with pituitary apoplexy in pituitary adenoma, following which she was discharged. At 3 months after discharge, thyrotropin-releasing hormone loading test performed revealed low thyrotropin-stimulating hormone and thyroid hormone levels, and the patient was in a depressed mood. Therefore, l-T4 replacement was initiated, following which her GH secretory capacity gradually improved. Here, we report, to the best of our knowledge, the first case of a patient with pituitary apoplexy in CNC. Such condition must be identified in young patients with recurrent cardiac myxoma, and examinations, such as head MRI, must be performed.
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- 2019
13. Bowel sound-based features to investigate the effect of coffee and soda on gastrointestinal motility
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Takeyuki Haraguchi, Takuma Gyobu, Kenta Kanemoto, Junichi Inobe, Takahiro Emoto, Ayumi Sano, Takashi Uebanso, Yuki Naito, Akira Takahashi, Kensuke Horiyama, and Masatake Akutagawa
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Generation process ,medicine.medical_specialty ,Abdominal pain ,Constipation ,business.industry ,0206 medical engineering ,Biomedical Engineering ,Motility ,Health Informatics ,02 engineering and technology ,020601 biomedical engineering ,Gastroenterology ,Gastrointestinal gas ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Signal Processing ,medicine ,Ingestion ,In patient ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
Objective Constipation negatively affects the quality of life by causing abdominal pain and distention. It is common among women and older individuals and frequently encountered in Japan. Coffee and soda ingestion promote gastrointestinal motility; therefore, both liquids are considered effective for alleviating constipation. While invasive approaches or large-scale equipment, such as magnetic resonance imaging and radiography, are needed to confirm their effect on gastrointestinal motility, bowel sound (BS) assessment can be easily and non-invasively performed using low-cost equipment. Differently to coffee, soda contains carbon dioxide and its ingestion may therefore increase gastrointestinal gas and in turn affect the BS generation process. However, the relationship between gastrointestinal gas and acoustic BS features has not yet been investigated. This study aimed to investigate the effect of increased gastrointestinal gas resulting from soda ingestion on the acoustic BS features extracted using a newly improved BS detection technique. Methods We used BS-based acoustic features, including number of BSs detected/min, BS length, and BS power, extracted via an artificial neural network-based BS detection approach, which was developed in a previous study and here improved. Results BSs detected/min and BS length significantly increased after, compared with before, coffee and soda intake. Furthermore, we found that longer BSs (>128 ms) were more significantly associated with soda (200 mL) intake than with coffee (200 mL) intake. Conclusions BS length and BSs detected/min can sensitively evaluate gastrointestinal motility, and BS length may reflect information on gastrointestinal gas in addition to gastrointestinal motility. Recording of BS-based acoustic features is a non-invasive and convenient means to evaluate the effects of liquid intake on gastrointestinal motility in patients with functional gastrointestinal disorders.
- Published
- 2021
14. Continuous Flow Synthesis of N-Phenylphenylglycine By Dehydration and Electrochemical Carboxylation
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Kenta Tanaka, Mahito Atobe, and Yuki Naito
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Carboxylation ,Chemical engineering ,Chemistry ,Continuous flow ,medicine ,Dehydration ,medicine.disease ,Electrochemistry - Abstract
α-Amino acids and their derivatives are important and essential resources for human life such as foods, medical drugs, cosmetics and so on. The classical Strecker α-amino acids synthesis is a longstanding method although this classical method requires highly toxic cyanide reagents as the carbon source and these regents are unfavorable from the viewpoint of green chemistry. Carbon dioxide, on the other hand, would also be an abundant and favorable carbon source. There are several examples of synthesis of α-amino acids by direct carboxylation of imines with carbon dioxide. Because of chemical stability of carbon dioxide, this direct carboxylation requires stoichiometric quantities of hard to handle reagents such as magnesium metal and organotins under severe or harsh reaction conditions. In this context, electrochemical carboxylation represents an attractive alternative to conventional chemical carboxylation methods because it is possible to readily generate highly reactive carbon nucleophiles that immediately react with carbon dioxide without handling sensitive, expensive, and toxic reagent. However, metal ions derived from sacrificial anode such as magnesium and aluminium anodes are generally required to stabilize the unstable carboxylate ions. A flow microreactor enables fast generation and consumption of the unstable species. Therefore, it is attractive reaction system for electrochemical carboxylation involving unstable carboxylate ions without sacrificial anodes. Moreover, the electrochemical synthesis with a flow microreactor offers operational advantages over batch processes. Under these backgrounds, we have demonstrated the electrochemical carboxylation of in situ generated imines in a continuous flow system. The present method enables an efficient synthesis for N-phenylphenylglycine derivatives using easily available aldehydes, amines, and CO2 without the use of toxic metal reagents and sacrificial anode. As shown in Figure 1, the imine was smoothly generated from aldehyde and amine by dehydration using MS4A desiccant in a flow operation, and then reacted with carbon dioxide in the electrochemical flow microreactor to afford N-phenylphenylglycine derivatives with high to moderate yields. Figure 1
- Published
- 2020
15. Isomeric effects of anti-diabetic α-lipoic acid with γ-cyclodextrin
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Naemi Kajiwara, Yutaka Yoshikawa, Kinuyo Matsumoto, Ayaka Okano, Daisuke Nakata, Hiroyuki Yasui, Keiji Terao, Yuki Naito, Naoko Ikuta, and Hinako Okamoto
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Male ,medicine.medical_specialty ,Adipose Tissue, White ,Drug Evaluation, Preclinical ,Gene Expression ,Adipose tissue ,Stereoisomerism ,General Biochemistry, Genetics and Molecular Biology ,Mice ,chemistry.chemical_compound ,Internal medicine ,medicine ,Animals ,Hypoglycemic Agents ,General Pharmacology, Toxicology and Pharmaceutics ,Protein kinase A ,Thioctic Acid ,Adiponectin ,AMPK ,General Medicine ,PPAR gamma ,Blot ,Lipoic acid ,Endocrinology ,Diabetes Mellitus, Type 2 ,Biochemistry ,chemistry ,Phosphorylation ,Signal Transduction ,gamma-Cyclodextrins - Abstract
Aims Previous studies reported the anti-diabetic effects of α-lipoic acid (αLA) isomers: racemic-αLA, R-αLA, or S-αLA. Previously, we examined the anti-diabetic effects of αLA administered as a food additive, but were unable to demonstrate the differences among different isomers. In this study, αLAs were complexed with γ-cyclodextrin (γCD) for the stability. We then investigated the anti-diabetic effects of racemic-, R-, and S-αLA/γCDs in KKA y mice. Main methods Male type 2 diabetic KKA y mice were divided into 5 groups, and fed either a high-fat-diet (HFD), HFD supplemented with γCD, or HFD supplemented with racemic-αLA/γCD, R-αLA/γCD, or S-αLA/γCD for 4 weeks. At the end of the feeding period, HbA1c and adiponectin levels were measured, PPARγ2 mRNA expression levels were assessed in adipose tissues using real-time PCR, and AMP-activated protein kinase (AMPK) phosphorylation levels were evaluated in the liver by Western blotting. Key findings The anti-diabetic effects of αLA; the isomeric compounds racemic-, R-, and S-αLA/γCD were investigated using a male type 2 diabetic KKA y mouse model. Significant differences were observed in HbA1c and plasma adiponectin levels between R-αLA/γCD-treated mice and control mice. PPARγ2 mRNA expression levels were slightly higher in racemic- and R-αLA/γCD-treated mice. Moreover, AMPK phosphorylation levels were elevated in racemic-αLA/γCD- and R-αLA/γCD-treated mice, but remained unchanged in S-αLA/γCD-treated mice. Significance These results suggested that the stereoisomerism mediates a difference in the anti-diabetic effects of racemic-, R-, and S-αLA/γCDs. Furthermore, the anti-diabetic mechanism of αLA/γCD action may be attributed to the activation of AMPK in the liver.
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- 2015
16. Takotsubo-like Myocardial Dysfunction in a Patient with Botulism
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Yoshiaki Kakehi, Shuichi Tonomura, Nobuyuki Takahashi, Hisao Shimizu, Yasunobu Goto, Yuki Naito, and Masatoshi Sato
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Male ,medicine.medical_specialty ,Case Report ,Disease ,030204 cardiovascular system & hematology ,Botulinum toxin a ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,Takotsubo Cardiomyopathy ,Internal medicine ,Internal Medicine ,medicine ,Humans ,In patient ,Botulism ,Botulinum Toxins, Type A ,Pure autonomic failure ,Takotsubo syndrome ,autonomic failure ,botulism ,business.industry ,General Medicine ,Respiratory Muscle Paralysis ,Middle Aged ,medicine.disease ,Cardiology ,Complication ,business ,botulinum toxin A ,030217 neurology & neurosurgery - Abstract
Botulinum toxin A (BTXA) can disrupt the neuromuscular and autonomic functions. We herein report a case of autonomic system dysfunction that manifested as Takotsubo-like myocardial dysfunction in a patient with botulism. Takotsubo syndrome results in acute cardiac insufficiency, another fatal complication of botulism in addition to respiratory muscle paralysis, particularly in patients with cardiovascular disease.
- Published
- 2017
17. Beneficial Effect of Bis(Hinokitiolato)Zn Complex on High-fat Diet-induced Lipid Accumulation in Mouse Liver and Kidney
- Author
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Yutaka Yoshikawa, Yuki Naito, Akiko Takenouchi, Katsuhiko Yoshizawa, and Hiroyuki Yasui
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,Diet, High-Fat ,Kidney ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Mice ,Internal medicine ,Diabetes mellitus ,medicine ,Organometallic Compounds ,Animals ,Humans ,Dyslipidemias ,Pharmacology ,Metabolic Syndrome ,Pioglitazone ,Chemistry ,Liver and kidney ,High fat diet ,Lipid metabolism ,medicine.disease ,Lipid Metabolism ,Obesity ,Disease Models, Animal ,Zinc ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,Liver ,Toxicity ,Thiazolidinediones ,medicine.drug ,Research Article - Abstract
Background/aim Metabolic syndrome-induced lifestyle-related diseases include diabetes mellitus (DM) and hypertension, and Zn-based compounds have effects on DM. We aimed to investigate the ameliorating effects of bis(hinokitiolato)Zn, [Zn(hkt)2] on lipid metabolism in the liver and kidney, histopathologically. Materials and methods We used a high-fat diet (HFD)-fed C57BL/6J mouse model and administered a diet containing 10-20 mg Zn/kg body weight (BW) or 20 mg pioglitazone/kg BW as the positive control. After the treatments, we collected blood, liver, and kidney samples and morphologically evaluated the mouse organs for fat accumulation. Results After a 4-month HFD administration, ectopic fat deposition was detected in the liver and kidney. Furthermore, Zn accumulation in the liver and kidney increased following [Zn(hkt)2] treatment, that reduced lipid accumulations and lipid toxicity in these tissues. Conclusion The results of this study suggest that [Zn(hkt)2] could be a novel anti-dyslipidaemia compound for treating diet-induced obesity.
- Published
- 2017
18. Analysis of the Risk Factors for Severe Oral Mucositis in Head and Neck Cancer after Chemoradiotherapy with S-1
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Kazuki Tomura, Yuki Naito, Mari Kogo, Naokazu Fujii, Akiko Nagatani, Touji Hashimoto, Yumiko Ogawa, Tadanori Sasaki, Tomiko Sunaga, and Takayuki Okabe
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Oncology ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,Pharmaceutical Science ,Risk Assessment ,Severity of Illness Index ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Mucositis ,Humans ,Aged ,Retrospective Studies ,Tegafur ,Pharmacology ,Univariate analysis ,Stomatitis ,Radiotherapy ,business.industry ,Standard treatment ,Head and neck cancer ,Retrospective cohort study ,Chemoradiotherapy ,Middle Aged ,medicine.disease ,Primary tumor ,Radiation therapy ,Drug Combinations ,Oropharyngeal Neoplasms ,Oxonic Acid ,Logistic Models ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Female ,business - Abstract
Radiotherapy (RT) and chemoradiotherapy (CRT) is widely accepted as the standard treatment for head and neck cancer (HNC). Oral mucositis (OM) often develops as an adverse reaction in HNC patients that receive RT or CRT involving S-1. However, little is known about the risk factors for OM in HNC patients. We retrospectively evaluated patients' pre-treatment clinical data in order to identify the risk factors for severe OM in HNC patients that are treated with RT or CRT involving S-1. We analyzed the cases of 129 patients who received RT or CRT involving S-1 for HNC. The endpoint of the survey was the occurrence of severe OM (≥grade 2). Risk factors that were significantly related to severe OM were identified using logistic regression analysis. The patients' mean age was 69.3±10.1 years, and 118 (92%) of the patients were male. The primary tumor was located in the oropharynx in 21.7% of cases. Severe OM occurred in 85.0% of cases. In the univariate analysis, the following variables were found to be associated with severe OM: age, the type of radiotherapy, disease stage, and chemotherapy. In the multivariate analysis, the location of the primary tumor and chemotherapy were identified as significant risk factors that contributed independently to the risk of severe OM (p
- Published
- 2017
19. Kounis syndrome presenting with anaphylaxis and vasospastic angina: a case report
- Author
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Takeshi Haoka, Yuka Morishita, Shinsuke Onishi, Yuki Naito, Isao Takahashi, and Satoshi Nara
- Subjects
Vasospastic angina ,medicine.medical_specialty ,business.industry ,Medicine ,Kounis syndrome ,business ,medicine.disease ,Dermatology ,Anaphylaxis - Published
- 2014
20. Antidiabetic effect of the α-lipoic acid γ-cyclodextrin complex
- Author
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Naemi Kajiwara, Daisuke Nakata, Yuki Naito, Yutaka Yoshikawa, Hiroyuki Yasui, Keiji Terao, Ayaka Okano, Kinuyo Matsumoto, and Naoko Ikuta
- Subjects
medicine.medical_specialty ,antidiabetic effect ,type 2 diabetes mellitus ,Clinical Biochemistry ,Medicine (miscellaneous) ,Disease ,γCD complex ,chemistry.chemical_compound ,Diabetes mellitus ,Internal medicine ,medicine ,Protein kinase A ,α-lipoic acid ,Nutrition and Dietetics ,business.industry ,Type 2 Diabetes Mellitus ,medicine.disease ,Lipoic acid ,Endocrinology ,Postprandial ,chemistry ,Phosphorylation ,Original Article ,lipids (amino acids, peptides, and proteins) ,business ,Homeostasis - Abstract
In recent years, the number of patients suffering from diabetes mellitus has been increasing worldwide. In particular, type 2 diabetes mellitus, a lifestyle-related disease, is recognized as a serious disease with various complications. Many types of pharmaceutics or specific health foods have been used for the management of diabetes mellitus. At the same time, the relationship between diabetes mellitus and α-lipoic acid has been recognized for many years. In this study, we found that the α-lipoic acid γ-cyclodextrin complex exhibited an HbA1c lowering effect for treating type 2 diabetes mellitus in animal models. Moreover, in this study, we investigated the activation of phosphorylation of AMP-activated protein kinase, which plays a role in cellular energy homeostasis, in the liver of KKA(y) mice by using α-lipoic acid and the α-lipoic acid γ-cyclodextrin complex. Our results show that the α-lipoic acid γ-cyclodextrin complex strongly induced the phosphorylation of AMP-activated protein kinase. Thus, we concluded that intake of the α-lipoic acid γ-cyclodextrin complex exerted an antidiabetic effect by suppressing the elevation of postprandial hyperglycemia as well as doing exercise.
- Published
- 2014
21. Indication for chest tube insertion in patients with minor traumatic pneumothorax
- Author
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Takafumi Shimizu, Akiko Oshiro, Shinsuke Onishi, Yuka Morishita, Isao Takahashi, Satoshi Nara, and Yuki Naito
- Subjects
medicine.medical_specialty ,business.industry ,Anesthesia ,Chest tube insertion ,Medicine ,In patient ,business ,Traumatic pneumothorax ,Surgery - Published
- 2012
22. Prenatal Care Robot for Ultrasound Diagnosis
- Author
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Yuki Naito, Ryosuke Tsumura, Juntaro Kumakiri, and Hiroyasu Iwata
- Subjects
medicine.medical_specialty ,Physical medicine and rehabilitation ,Computer science ,business.industry ,Dead weight ,Ultrasound ,medicine ,Control unit ,Robot ,Prenatal care ,business ,Compensation (engineering) - Published
- 2018
23. PREPARATION AND PRESERVATION OF M-sol, A NOVEL ADDITIVE SOLUTION FOR WASHING AND REPLACEMENT OF PLATELET CONCENTRATES
- Author
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Mitsuaki Akino, Junichi Hirayama, Satoru Tamura, Yuki Naito, Masako Katsumata, Chihiro Homma, Mitsuhiro Fujihara, Hiroshi Azuma, Toshiaki Kato, and Hisami Ikeda
- Subjects
business.industry ,Medicine ,business ,Nuclear medicine - Abstract
洗浄・置換血小板(W/R-PC)は血小板製剤による輸血副作用を防止する目的で調製されている.我々は血小板製剤の洗浄および置換には臨床使用が認められた輸液および電解質溶液を混和させることで製造される洗浄置換液(M-sol)を用いている.M-solの製造はクリーンルームにて用時行っているが,本研究では以下の二点を中心に製造方法の改良を行った.1)除菌フィルター付バッグを使用することで,クリーンルーム外での製造を可能とした.2)調製したM-solはアルミ蒸着袋に真空保存することで,pHを一定に保つことが可能となり最短でも1年間の保存が可能であった.さらに我々はW/R-PC 1バッグ分のM-solを製造する方法(単品式)と一度に多量のM-solを製造する方法(多量式)を考案し,両法によるM-solに差がないことを確認した.真空包装したM-solは30℃で1年間保存してもpHに変化はなかった.さらに,製造直後のM-solと長期保存したM-solにより調製された置換PC(R-PC)には血小板機能に差はみられなかった.また,長距離輸送したM-solを用いて調製した洗浄PC(W-PC)についても,血小板への影響はみられなかった.改良された方法ではM-solの製造時間に制限されずにW/R-PCの調製が可能となるであろう.
- Published
- 2010
24. TWO METHODS OF PREPARING WASHED AND/OR REPLACED PLATELET CONCENTRATES
- Author
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Toshiaki Kato, Masako Katsumata, Chihiro Homma, Hisami Ikeda, Sadamitsu Yamamoto, Mitsuaki Akino, Mitsuhiro Fujihara, Junichi Hirayama, Satoru Tamura, Hiroshi Azuma, and Yuki Naito
- Subjects
medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Platelet ,business ,Gastroenterology - Abstract
血小板輸血による副作用を予防する目的で血漿を除去した洗浄·置換血小板(Washed and/or replaced platelet concentrates,W/R-PC)が調製されている.調製法としては2つの方法が主に使われているが両者を比較した報告はない.そこで,成分採血由来の血小板(Plasma-PC)を洗浄置換·保存液M-solで洗浄し,M-solに再浮遊する方法(洗浄置換法WR-method)とplasma-PC中の血漿を遠心後M-solに置換する方法(置換法R-method)について,各W/R-PCの血小板機能や輸血効果を比較検討した. 各方法で調製されたW/R-PCの血小板回収率や残存血漿蛋白,in vitroにおける性状(pH,凝集能,%HSR,P-セレクチン陽性率,血小板形態)を調べ,アナフィラキシーショックなどの重篤な副作用がみられた患者を対象に,WR-methodによるPC(WR-PC)を75バッグ(患者: 6名),R-methodによるPC(R-PC)を31バッグ(患者: 4名)に投与して,補正血小板増加数(CCI)及び副作用の予防効果を比較した. WR-PCとR-PCの血小板回収率はそれぞれ90.5±1.4%と89.5±1.8%で有意差はなく,血漿蛋白除去率(残存蛋白量)は,WR-PCでは96.9±0.7%(428±95mg)で,R-PCの95.4±0.9%(627±130mg)より有意に高かった(各n=7).48時間の保存期間中(PC採血後5日目),in vitroの性状はpH以外の項目に差はみられなかった.Plasma-PCは保存と共にpHが低下し,24時間後には7.05±0.04であったのに対し,W/R-PCは何れも調製直後に一時的なpHの低下が認められたが,WR-PCでは7.37±0.03,R-PCは7.40±0.02に上昇した.輸血24時間後のCCI(×104/ul)は,WR-PCが1.53±0.82(n=51),R-PCが1.59±0.78(n=18)と良好であり,何れのW/R-PCについても,輸血後の副作用の発生はなく,副作用予防効果が示された.また,何れも有害事象は認められなかった. WR-PCとR-PCは,血小板機能や輸血効果について,同等である事が確認されたが,R-methodは調製工程が少なく,より簡便であるため,PCの血漿除去法として推奨される.
- Published
- 2009
25. Introduction of silencing-inducing transgene against Fgf19 does not affect expression of Tbx5 and β3-tubulin in the developing chicken retina
- Author
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Kumiko Ui-Tei, Yuki Naito, Sayuri Tomonari, Mayumi Okamoto, Hideyo Ohuchi, Sumihare Noji, and Kaoru Saigo
- Subjects
Regulation of gene expression ,Gene knockdown ,Messenger RNA ,Retina ,genetic structures ,Retinal ,Cell Biology ,Biology ,Molecular biology ,eye diseases ,chemistry.chemical_compound ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,chemistry ,RNA interference ,medicine ,Gene silencing ,sense organs ,Developmental Biology - Abstract
Fgf19 is known to be expressed in the developing chicken eye but its functions during retinal development have remained elusive. Since Fgf19 is expressed in the dorsal portion of the optic cup, it is intriguing to know whether FGF19 is required for expression of dorso-ventral morphogenetic genes in the eye. To clarify this, expression patterns of Tbx5 and Vax were examined in the developing eye after in ovo RNA interference targeted against Fgf19. Quantitative polymerase chain reaction (PCR) analysis showed that the short-hairpin RNAs (shRNAs) targeted against Fgf19 could reduce its expression in the eye to less than 50% of a relative amount of mRNA, compared with contralateral or untreated control eyes. However, no obvious alteration in expression domains of Tbx5 or Vax was observed. Misexpression of Tbx5 or Tbx5-RNAi did not alter the Fgf19 expression either. Furthermore, although Fgf19 is expressed in the central retina before neurogenesis occurs, β3-tubulin, a marker for early retinal differentiation was still detected in the central retina after knockdown of Fgf19. Thus, knockdown of Fgf19 supports no obvious regulations between Fgf19 and Tbx5, or exhibits no phenotypes that perturb early retinal differentiation.
- Published
- 2008
26. Utility of abdominal ultrasonography with hand-carried devices in the emergency room
- Author
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Akira Yoshida, Toru Kameda, Yuka Morishita, Haruko Manabe, Shinsuke Onishi, Koji Iwasaki, Yuki Naito, Takafumi Shimizu, Taeko Honma, and Isao Takahashi
- Subjects
medicine.diagnostic_test ,business.industry ,Abdominal ultrasonography ,medicine ,Radiology, Nuclear Medicine and imaging ,Medical emergency ,medicine.disease ,business - Published
- 2007
27. PREPARATION OF REPLACED-PLATELET CONCENTRATES AS A TECHNICAL COOPERATION IN HOKKAIDO RED CROSS BLOOD CENTER (RESULT FOR THE LAST FOUR YEARS)
- Author
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Masako Katsumata, Chihiro Homma, Yuki Naito, Hisami Ikeda, Toshiaki Kato, Hiroshi Azuma, Mitsuaki Akino, and Yoshiaki Hayashi
- Subjects
medicine.medical_specialty ,business.industry ,Medicine ,Platelet ,business ,Blood center ,Surgery - Published
- 2012
28. siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
- Author
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Yuki Naito, Kumiko Ui-Tei, Kaoru Saigo, Toru Nishikawa, and Yutaka Takebe
- Subjects
Small interfering RNA ,Anti-HIV Agents ,Hepatitis C virus ,viruses ,Trans-acting siRNA ,Biology ,medicine.disease_cause ,Antiviral Agents ,Virus ,Article ,Conserved sequence ,RNA interference ,Genetics ,medicine ,Web application ,RNA Viruses ,RNA, Small Interfering ,Conserved Sequence ,Internet ,Base Sequence ,business.industry ,Genetic Variation ,Virology ,RNA silencing ,RNA, Viral ,RNA Interference ,business ,Software - Abstract
siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus searches for functional, off-target minimized siRNAs targeting highly conserved regions of divergent viral sequences. These siRNAs are expected to resist viral mutational escape, since their highly conserved targets likely contain structurally/functionally constrained elements. siVirus will be a useful tool for designing optimal siRNAs targeting highly divergent pathogens, including human immunodeficiency virus (HIV), hepatitis C virus (HCV), influenza virus and SARS coronavirus, all of which pose enormous threats to global human health.
- Published
- 2006
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29. Transcriptional modulation using HDACi depsipeptide promotes immune cell-mediated tumor destruction of murine B16 melanoma
- Author
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Yusuke Furukawa, Nicole A. L. Chun, Yuki Naito, Yukiko Kobayashi, Mamitaro Ohtsuki, Atsuko Sato, Eiji Kobayashi, Takashi Murakami, Mayumi Hara, and Yasuhiko Kano
- Subjects
Cyclin-Dependent Kinase Inhibitor p21 ,Adoptive cell transfer ,Transcription, Genetic ,medicine.drug_class ,medicine.medical_treatment ,Cell ,Melanoma, Experimental ,chemical and pharmacologic phenomena ,Mice, Transgenic ,Dermatology ,Biology ,Biochemistry ,Histone Deacetylases ,Mice ,Depsipeptides ,medicine ,Animals ,fas Receptor ,Histone H3 acetylation ,neoplasms ,Molecular Biology ,Melanoma ,Oligonucleotide Array Sequence Analysis ,Depsipeptide ,Caspase 7 ,Antibiotics, Antineoplastic ,Caspase 3 ,Histone deacetylase inhibitor ,Cell Biology ,Immunotherapy ,Gp100 antigen ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,Perforin ,Cancer research ,biology.protein - Abstract
With melanoma, as with many other malignancies, aberrant transcriptional repression is a hallmark of refractory cancer. To restore gene expression, use of a histone deacetylase inhibitor (HDACi) is expected to be effective. Our recent DNA micro-array analysis showed that the HDACi depsipeptide (FK228) significantly enhances gp100 antigen expression. Herein, we demonstrate that depsipeptide promotes tumor-specific T-cell-mediated killing of B16/F10 murine melanoma cells. First, by a quantitative assay of caspase-3/7 activity, a sublethal dose of depsipeptide was determined (ED50: 5 nM), in which p21(Waf1/Cip1) and Fas were sufficiently evoked concomitantly with histone H3 acetylation. Second, the sublethal dose of depsipeptide treatment with either a recombinant Fas ligand or tumor-specific T cells synergistically enhanced apoptotic cell death in B16/F10 cells in vitro. Furthermore, we found that depsipeptide increased levels of perforin in T cells. Finally, in vivo metastatic growth of B16/F10 in the lung was significantly inhibited by a combination of depsipeptide treatment and immune cell adoptive transfer from immunized mice using irradiated B16 cells and gp100-specific (Pmel-1) TCR transgenic mice (P
- Published
- 2008
30. Optimal design and validation of antiviral siRNA for targeting HIV-1
- Author
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Kyoko Nohtomi, Yuki Naito, Kaoru Saigo, Toshinari Onogi, Rie Uenishi, Kumiko Ui-Tei, and Yutaka Takebe
- Subjects
lcsh:Immunologic diseases. Allergy ,Small interfering RNA ,Base Sequence ,Trans-acting siRNA ,Human immunodeficiency virus (HIV) ,Short Report ,RNA ,Biology ,medicine.disease_cause ,Genome ,Virology ,Conserved sequence ,RNA silencing ,Infectious Diseases ,RNA interference ,Databases, Genetic ,medicine ,HIV-1 ,Humans ,RNA, Viral ,RNA Interference ,RNA, Small Interfering ,lcsh:RC581-607 ,Conserved Sequence - Abstract
We propose rational designing of antiviral short-interfering RNA (siRNA) targeting highly divergent HIV-1. In this study, conserved regions within HIV-1 genomes were identified through an exhaustive computational analysis, and the functionality of siRNAs targeting the highest possible conserved regions was validated. We present several promising antiviral siRNA candidates that effectively inhibited multiple subtypes of HIV-1 by targeting the best conserved regions in pandemic HIV-1 group M strains.
- Published
- 2007
31. Guidelines for the Selection of Effective Short-Interfering RNA Sequences for Functional Genomics
- Author
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Kaoru Saigo, Kumiko Ui-Tei, and Yuki Naito
- Subjects
Genetics ,Comparative genomics ,Gene knockdown ,Small interfering RNA ,fungi ,Computational biology ,Biology ,RNA interference ,Interferon ,medicine ,Gene silencing ,Gene ,Functional genomics ,medicine.drug - Abstract
To avoid long-double-stranded-RNA-dependent interferon response, short-interfering RNAs (siRNAs) are widely used for RNA interference (RNAi) in mammalian cells. siRNA-based RNAi, however, may not be readily available for the large-scale gene silencing essential for systematic functional genomics, because only a limited fraction of siRNAs is capable of inducing effective mammalian RNAi. siRNAs correctly designed for the knockdown of a particular gene may also destroy the functions of unrelated genes. Here, we describe algorithms by which these serious setbacks can be eliminated in mammalian functional genomics using RNAi and a Web-based online software system for computing highly functional siRNA sequences with maximal target-specificity in mammalian RNAi.
- Published
- 2006
32. ED placement of arterial sheath for endovascular management in multiple trauma
- Author
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Kazumitsu Koito, Yasuyuki Yonemasu, Takeshi Ichimura, Naoki Hirokawa, Naoya Yama, Masato Hareyama, Yuki Naito, Yasufumi Asai, and Sakari Sasaki
- Subjects
medicine.medical_specialty ,Text mining ,business.industry ,General surgery ,Emergency Medicine ,Medicine ,General Medicine ,business - Published
- 2004
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