15 results on '"VPS"'
Search Results
2. Flipping the switch
- Author
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Xavier Pierrat and Alexandre Persat
- Subjects
Vibrio cholerae ,biofilm ,matrix protein ,protease ,RbmA ,VPS ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
A structural switch controls the architecture of Vibrio cholerae biofilms by mediating the interactions between two matrix components.
- Published
- 2017
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3. Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
- Author
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Jiunn CN Fong, Andrew Rogers, Alicia K Michael, Nicole C Parsley, William-Cole Cornell, Yu-Cheng Lin, Praveen K Singh, Raimo Hartmann, Knut Drescher, Evgeny Vinogradov, Lars EP Dietrich, Carrie L Partch, and Fitnat H Yildiz
- Subjects
Vibrio cholerae ,biofilm ,matrix protein ,protease ,RbmA ,VPS ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Biofilm formation is critical for the infection cycle of Vibrio cholerae. Vibrio exopolysaccharides (VPS) and the matrix proteins RbmA, Bap1 and RbmC are required for the development of biofilm architecture. We demonstrate that RbmA binds VPS directly and uses a binary structural switch within its first fibronectin type III (FnIII-1) domain to control RbmA structural dynamics and the formation of VPS-dependent higher-order structures. The structural switch in FnIII-1 regulates interactions in trans with the FnIII-2 domain, leading to open (monomeric) or closed (dimeric) interfaces. The ability of RbmA to switch between open and closed states is important for V. cholerae biofilm formation, as RbmA variants with switches that are locked in either of the two states lead to biofilms with altered architecture and structural integrity.
- Published
- 2017
- Full Text
- View/download PDF
4. CSF levels of myelin basic protein in pediatric patients with entriculoperitoneal shunt infection
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Krzysztof Zeman, Bartosz Polis, Emilia Nowosławska, Jarosław Paśnik, and Lech Polis
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Pathology ,medicine.medical_specialty ,Immunology ,Central nervous system ,cns infection ,lcsh:Medicine ,Brain damage ,immune response ,03 medical and health sciences ,0302 clinical medicine ,Cerebrospinal fluid ,medicine ,Immunology and Allergy ,Pleocytosis ,CSF albumin ,biology ,business.industry ,lcsh:R ,medicine.disease ,Hydrocephalus ,Myelin basic protein ,medicine.anatomical_structure ,vps ,biology.protein ,Clinical Immunology ,medicine.symptom ,hydrocephalus ,Complication ,business ,030215 immunology - Abstract
Introduction Hydrocephalus is a common disorder of the central nervous system (CNS) in the pediatric population. Surgical treatment options involve ventriculoperitoneal shunt (VPS) placement. VPS infection is the most common complication of surgically treated hydrocephalus in pediatric patients [1, 2],which may lead to neuronal damage. Myelin basic protein (MBP) has been proposed as a marker of neuronal injury in a variety of contexts, and MBP levels in the cerebrospinal fluid (CSF) may be used to assess the severity of neuronal damage [1, 3, 4]. Therefore, the aim of this study was to evaluate the CSF level of myelin basic protein (MBP) in a group of pediatric patients with VPS infection. Material and methods Thirty CSF samples were collected from pediatric patients with VPS infection. CSF levels of MBP were measured at three time points, marked by contamination detection, obtention of the first sterile CSF culture, and VPS shunt implantation. The collected data were compared with those of the control group composed of children with active congenital hydrocephalus and valid CSF values. Results The MBP level in the study group was higher than the corresponding control values in the second and third measurements. The highest MBP level was reached in the study group in the second and third measurements. Conclusions The lack of normalization of MBP level in the CSF of children with shunt infection could be connected with ongoing brain damage. It takes longer than the normalization of CSF protein level and pleocytosis. The delay is associated with a prolonged reaction of the immunological system.
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- 2020
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5. Virtual patient simulation platforms challenging traditional CME: Identification of gaps in knowledge in the management of Type 2 diabetes and Hyperlipidaemia
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Boris Draznin, Eugene Pozniak, and Igal Iancu
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Medical education ,Medicine (General) ,LC8-6691 ,Computer science ,Short Report ,Type 2 diabetes ,medicine.disease ,clinical decision making ,Special aspects of education ,Identification (information) ,R5-920 ,Virtual patient ,Human–computer interaction ,VPS ,CME ,medicine ,virtual patient simulation ,Research Article - Abstract
As any other aspect of contemporary life, an old and established field of CME undergoes a transformation into a “digital age.” Virtual patient simulation (VPS) has shown to be an interactive and efficient way of engaging healthcare professionals (HCP) in continuing medical education. VPS can identify gaps in knowledge and improve competence, using engaging, online tools. The Edocate VPS Platform has been developed by a group of physicians, education experts, and computer specialists. In this communication, we report the experience of several hundreds of HCP using the Edocate VPS application in the fields of type 2 diabetes (T2DM) and hyperlipidemia. The Edocate VPS application, displaying both simple and complex clinical situations, was presented to an international group of HCPs who had the task to perform physical exams, order lab and imaging tests, update the medical record with the right diagnoses, prescribe medications, and perform long-term follow-up through multiple visits. The HCPs received personalized, guideline-based, feedback on their actions. The analytical capabilities of the Edocate VPS platform run very deep and allow in-depth analysis of learners’ competence in achieving the best outcomes, while teaching to apply a personalized approach, avoiding side effects of medications, and providing instantaneous access to the most current references in the field. The data collected from the program has shown significant gaps in knowledge and adherence to guidelines in the areas of management of T2DM and hyperlipidemia. Only about 50% of all participants achieved guideline-compatible glycemic control – namely HbA1c below 7%. Furthermore, only 41% of practicing physicians and 23% of family medicine residents achieved levels of LDL below 70 mg/dl in their virtual patients. In conclusion, the data presented in this communication strongly suggests that this novel simulation platform can enable medical organizations to create immersive VPS cases for their primary educational and CME efforts.
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- 2021
6. Fur Represses Vibrio cholerae Biofilm Formation via Direct Regulation of vieSAB, cdgD, vpsU, and vpsA-K Transcription
- Author
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Yiquan Zhang, Hongqun Zhao, Jing Lou, Baowei Diao, Qin Qin, Jie Li, Biao Kan, Yue Qiu, He Gao, Jingyun Zhang, Qiannan Shi, and Lizhi Ma
- Subjects
Microbiology (medical) ,lcsh:QR1-502 ,Repressor ,medicine.disease_cause ,Microbiology ,biofilm ,lcsh:Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Transcription (biology) ,medicine ,Electrophoretic mobility shift assay ,Gene ,Vibrio cholerae ,Fur ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Biofilm ,c-di-GMP ,biology.organism_classification ,Vibrio ,Cell biology ,chemistry ,vps ,DNA - Abstract
Attached Vibrio cholerae biofilms are essential for environmental persistence and infectivity. The vps loci (vpsU, vpsA-K, and vpsL-Q) are required for mature biofilm formation and are responsible for the synthesis of exopolysaccharide. Transcription of vps genes is activated by the signaling molecule bis-(3'-5')-cyclic di-GMP (c-di-GMP), whose metabolism is controlled by the proteins containing the GGDEF and/or EAL domains. The ferric uptake regulator (Fur) plays key roles in the transcription of many genes involved in iron metabolism and non-iron functions. However, roles for Fur in Vibrio biofilm production have not been documented. In this study, phenotypic assays demonstrated that Fur, independent of iron, decreases in vivo c-di-GMP levels and inhibits in vitro biofilm formation by Vibrio cholerae. The Fur box-like sequences were detected within the promoter-proximal DNA regions of vpsU, vpsA-K, vieSAB, and cdgD, suggesting that transcription of these genes may be under the direct control of Fur. Indeed, the results of luminescence, quantitative PCR (qPCR), electrophoretic mobility shift assay (EMSA), and DNase I footprinting assays demonstrated Fur to bind to the promoter-proximal DNA regions of vpsU, vpsA-K, and cdgD to repress their transcription. In contrast, Fur activates the transcription of vieSAB in a direct manner. The cdgD and vieSAB encode proteins with GGDEF and EAL domains, respectively. Thus, data presented here highlight a new physiological role for Fur wherein it acts as a repressor of V. cholerae biofilm formation mediated by decreasing the production of exopolysaccharide and the intracellular levels of c-di-GMP.
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- 2020
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7. Structural connectome and connectivity lateralization of the multimodal vestibular cortical network
- Author
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Roberta Riccelli, Gianfranco Bosco, Iole Indovina, Vincenzo Maffei, Francesco Lacquaniti, Nicola Toschi, Luca Passamonti, Passamonti, Luca [0000-0002-7937-0615], and Apollo - University of Cambridge Repository
- Subjects
Adult ,Male ,Cognitive Neuroscience ,Motion Perception ,Insula ,Sensory system ,Intraparietal sulcus ,Settore BIO/09 ,Article ,050105 experimental psychology ,Lateralization of brain function ,Functional Laterality ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,VPS ,Cortex (anatomy) ,Parietal Lobe ,Neural Pathways ,medicine ,Connectome ,PIVC ,Humans ,0501 psychology and cognitive sciences ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Vestibular system ,HCP ,MRI ,OP2 ,PIC ,Human Connectome Project ,05 social sciences ,Somatosensory Cortex ,Vestibular cortex ,Magnetic Resonance Imaging ,medicine.anatomical_structure ,Neurology ,Female ,Vestibule, Labyrinth ,Psychology ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Unlike other sensory systems, the structural connectivity patterns of the human vestibular cortex remain a matter of debate. Based on their functional properties and hypothesized centrality within the vestibular network, the 'core' cortical regions of this network are thought to be areas in the posterior peri-sylvian cortex, in particular the retro-insula (previously named the posterior insular cortex-PIC), and the subregion OP2 of the parietal operculum. To study the vestibular network, structural connectivity matrices from n=974 healthy individuals drawn from the public Human Connectome Project (HCP) repository were estimated using multi-shell diffusion-weighted data followed by probabilistic tractography and spherical-deconvolution informed filtering of tractograms in combination with subject-specific grey-matter parcellations. Weighted graph-theoretical measures, modularity, and 'hubness' of the multimodal vestibular network were then estimated, and a structural lateralization index was defined in order to assess the difference in fiber density of homonym regions in the right and left hemisphere. Differences in connectivity patterns between OP2 and PIC were also estimated. We found that the bilateral intraparietal sulcus, PIC, and to a lesser degree OP2, are key 'hub' regions within the multimodal vestibular network. PIC and OP2 structural connectivity patterns were lateralized to the left hemisphere, while structural connectivity patterns of the posterior peri-sylvian supramarginal and superior temporal gyri were lateralized to the right hemisphere. These lateralization patterns were independent of handedness. We also found that the structural connectivity pattern of PIC is consistent with a key role of PIC in visuo-vestibular processing and that the structural connectivity pattern of OP2 is consistent with integration of mainly vestibular somato-sensory and motor information. These results suggest an analogy between PIC and the simian visual posterior sylvian (VPS) area and OP2 and the simian parieto-insular vestibular cortex (PIVC). Overall, these findings may provide novel insights to the current models of vestibular function, as well as to the understanding of the complexity and lateralized signs of vestibular syndromes.
- Published
- 2020
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8. Virtual Patient Simulation in Continuing Education: Improving the Use of Guideline-Directed Care in Venous Thromboembolism Treatment
- Author
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Alesandro Norton, Jelena Spyropoulos, Katie S. Lucero, Doug Blevins, Jacob Cohen, and Martin Warters
- Subjects
medicine.medical_specialty ,lcsh:LC8-6691 ,lcsh:R5-920 ,pulmonary embolism ,lcsh:Special aspects of education ,business.industry ,Continuing education ,Guideline ,medicine.disease ,clinical decision making ,Pulmonary embolism ,Virtual patient ,Clinical decision making ,vps ,cme ,Medicine ,virtual patient simulation ,business ,Intensive care medicine ,medical education ,lcsh:Medicine (General) ,Venous thromboembolism ,Research Article - Abstract
Results of a CME-certified activity completed by a total of 986 cardiologists and 783 haematologists-oncologists (haem-oncs) from around the world were examined to determine whether virtual patient simulation could improve decision-making and performance within the simulation related to patient evaluation, tailoring anticoagulant therapy, and patient management to improve adherence using patient-centred care strategies. Results showed a significant overall impact of education from pre- to post-clinical guidance (CG) on correct decisions made in both cases for cardiologists, with a relative improvement of 22% for Case 1 (45% pre- to 55% post-CG, n = 475, t(474) = 14.12, P
- Published
- 2020
9. Ventriculoperitoneal Shunt Outcomes of Normal Pressure Hydrocephalus: A Case Series of 116 Patients
- Author
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Aaron Plitt, James P. Caruso, Om J. Neeley, H. Hunt Batjer, Tarek Y. El Ahmadieh, Eva M. Wu, Robert A. Ruchinskas, DaiWai M. Olson, Munro Cullum, Jonathan White, Benjamin Kafka, and Salah G. Aoun
- Subjects
medicine.medical_specialty ,normal pressure hydrocephalus ,Physical Medicine & Rehabilitation ,complications ,Neurosurgery ,macromolecular substances ,030204 cardiovascular system & hematology ,Asymptomatic ,03 medical and health sciences ,0302 clinical medicine ,Lumbar ,Cerebrospinal fluid ,Normal pressure hydrocephalus ,medicine ,Psychology ,nph ,ventriculoperitoneal shunt ,Gait Disturbance ,business.industry ,General Engineering ,medicine.disease ,Surgery ,Shunting ,Catheter ,predictors ,vps ,outcome ,medicine.symptom ,Complication ,business ,030217 neurology & neurosurgery - Abstract
Background Permanent cerebrospinal fluid (CSF) diversion with a ventriculoperitoneal shunt (VPS) is a treatment option for patients with normal pressure hydrocephalus (NPH). Objectives Herein, we examine the outcomes, complication rates, and associations between predictors and outcomes after VPS in patients with NPH. Methods This was a retrospective review of 116 patients (68 males, 48 females) with NPH who underwent VPS placement from March 2008 to September 2017 after demonstrating objective and/or subjective improvement after a lumbar drain trial. The Chi-square test of independence was used to examine associations between predictors and clinical improvement after shunting. Complications associated with the VPS procedure were recorded. Results The mean age was 77 years (range 52-93). The mean duration of disturbance in gait, cognition, and continence were 29, 32, and 28 months, respectively. Of the 116 patients, 111 followed up at two weeks; of these, improvement in gait, incontinence, and cognition were reported in 72, 20, and 23 patients, respectively. Gait improved more than incontinence or cognition. A shorter duration of gait disturbance predicted an improvement in gait after shunting (p
- Published
- 2019
10. Response Properties of Interneurons and Pyramidal Neurons in Macaque MSTd and VPS Areas During Self-Motion
- Author
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Sha-Sha Li, Ying-Ying Zhang, Aihua Chen, and Dan-Qing Jiang
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Male ,0301 basic medicine ,genetic structures ,Interneuron ,Cognitive Neuroscience ,media_common.quotation_subject ,Motion Perception ,Neuroscience (miscellaneous) ,MSTd ,Sensory system ,Stimulation ,interneuron ,Macaque ,lcsh:RC321-571 ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Interneurons ,VPS ,biology.animal ,Perception ,pyramidal neuron ,medicine ,Animals ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Original Research ,media_common ,self-motion ,Vestibular system ,vestibular ,biology ,Proprioception ,Pyramidal Cells ,Medial superior temporal area ,Macaca mulatta ,Temporal Lobe ,Sensory Systems ,030104 developmental biology ,medicine.anatomical_structure ,nervous system ,Head Movements ,visual ,Vestibule, Labyrinth ,Neuroscience ,Photic Stimulation ,030217 neurology & neurosurgery - Abstract
To perceive self-motion perception, the brain needs to integrate multi-modal sensory signals such as visual, vestibular and proprioceptive cues. Self-motion perception is very complex and involves multi candidate areas. Previous studies related to self-motion perception during passive motion have revealed that some of the areas show selective response to different directions for both visual (optic flow) and vestibular stimuli, such as the dorsal subdivision of the medial superior temporal area (MSTd) and the visual posterior sylvian fissure (VPS), although MSTd is dominated by visual signals and VPS is dominated by vestibular signals. However, none of studies related to self-motion perception have distinguished the different neuron types with distinct neuronal properties in cortical microcircuitry, which limited our understanding of the local circuits for self-motion perception. In the current study, we classified the recorded MSTd and VPS neurons into putative pyramidal neurons and putative interneurons based on the extracellular action potential waveforms and spontaneous firing rates. We found that: (1) the putative interneurons exhibited obviously broader direction tuning than putative pyramidal neurons in response to their dominant (visual for MSTd; vestibular for VPS) stimulation type; (2) either in visual or vestibular condition, the putative interneurons were more responsive but with larger variability than the putative pyramidal neurons for both MSTd and VPS areas; and (3) the timing of vestibular and visual peak directional tuning was earlier in the putative interneurons than that of the putative pyramidal neurons for both MSTd and VPS areas. Based on these findings we speculated that, within the microcircuitry, several adjacent putative interneurons with broad direction tuning receive earlier strong but variable signals, which might act feedforward input to shape the direction tuning of the target putative pyramidal neuron, but each interneuron may participate in several microcircuitries, targeting different output neurons.
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- 2018
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11. Flipping the switch
- Author
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Alexandre Persat and Xavier Pierrat
- Subjects
0301 basic medicine ,QH301-705.5 ,Structural Biology and Molecular Biophysics ,Science ,matrix protein ,macromolecular substances ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,biofilm ,03 medical and health sciences ,Bacterial Proteins ,VPS ,medicine ,Biology (General) ,Vibrio cholerae ,Microbiology and Infectious Disease ,General Immunology and Microbiology ,Chemistry ,General Neuroscience ,protease ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,Biophysics and Structural Biology ,030104 developmental biology ,Structural biology ,Biofilms ,RbmA ,Biophysics ,Medicine ,Other ,Insight ,Research Article - Abstract
Biofilm formation is critical for the infection cycle of Vibrio cholerae. Vibrio exopolysaccharides (VPS) and the matrix proteins RbmA, Bap1 and RbmC are required for the development of biofilm architecture. We demonstrate that RbmA binds VPS directly and uses a binary structural switch within its first fibronectin type III (FnIII-1) domain to control RbmA structural dynamics and the formation of VPS-dependent higher-order structures. The structural switch in FnIII-1 regulates interactions in trans with the FnIII-2 domain, leading to open (monomeric) or closed (dimeric) interfaces. The ability of RbmA to switch between open and closed states is important for V. cholerae biofilm formation, as RbmA variants with switches that are locked in either of the two states lead to biofilms with altered architecture and structural integrity.
- Published
- 2017
12. Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
- Author
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William Cole Cornell, Praveen K. Singh, Andrew Rogers, Fitnat H. Yildiz, Yu Cheng Lin, Knut Drescher, Raimo Hartmann, Alicia K. Michael, Evgeny Vinogradov, Lars E. P. Dietrich, Jiunn Cn Fong, Carrie L. Partch, and Nicole C. Parsley
- Subjects
0301 basic medicine ,Protein Conformation ,matrix protein ,medicine.disease_cause ,biofilm ,Models ,biophysics ,structural biology ,Biology (General) ,Vibrio cholerae ,biology ,Chemistry ,General Neuroscience ,Bacterial ,General Medicine ,Infectious Diseases ,RbmA ,Medicine ,Protein Binding ,QH301-705.5 ,Science ,infectious disease ,1.1 Normal biological development and functioning ,030106 microbiology ,macromolecular substances ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,Vaccine Related ,03 medical and health sciences ,Bacterial Proteins ,Polysaccharides ,VPS ,Underpinning research ,Biodefense ,medicine ,Viral matrix protein ,General Immunology and Microbiology ,Prevention ,microbiology ,Biofilm ,Structural integrity ,Molecular ,protease ,biology.organism_classification ,Vibrio ,Fibronectin ,Emerging Infectious Diseases ,Good Health and Well Being ,Structural biology ,Biofilms ,biology.protein ,Biophysics ,Biochemistry and Cell Biology ,Digestive Diseases - Abstract
Biofilm formation is critical for the infection cycle of Vibrio cholerae. Vibrio exopolysaccharides (VPS) and the matrix proteins RbmA, Bap1 and RbmC are required for the development of biofilm architecture. We demonstrate that RbmA binds VPS directly and uses a binary structural switch within its first fibronectin type III (FnIII-1) domain to control RbmA structural dynamics and the formation of VPS-dependent higher-order structures. The structural switch in FnIII-1 regulates interactions in trans with the FnIII-2 domain, leading to open (monomeric) or closed (dimeric) interfaces. The ability of RbmA to switch between open and closed states is important for V. cholerae biofilm formation, as RbmA variants with switches that are locked in either of the two states lead to biofilms with altered architecture and structural integrity.
- Published
- 2017
- Full Text
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13. Use of the acoustic positioning system in artificial reef sites
- Author
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Aytaç Özgül and Ege Üniversitesi
- Subjects
Gynecology ,edremit bay ,lcsh:SH1-691 ,medicine.medical_specialty ,edremit körfezi ,Fen ,Akustik telemetri,VPS,yapay resif,Edremit Körfezi,performans ,Science ,media_common.quotation_subject ,Art ,lcsh:Aquaculture. Fisheries. Angling ,Acoustic telemetry,VPS,Artificial reefs,Edremit Bay,Performance ,performans ,vps ,lcsh:QH540-549.5 ,medicine ,lcsh:Ecology ,yapay resif ,acoustic telemetry ,artificial reefs ,performance ,media_common ,akustik telemetri - Abstract
Acoustic telemetrytechnology has been used for monitoring fish in artificial reefs since twentyyears. In this study, acoustic positioning system design was developed fortelemetry studies in artificial reefs. The performance and effective detectiondistance of acoustic positioning system were also determined. In this researchwas carried out between July and September of 2013 in Edremit Bay artificialreefs area, Vemco of acoustic positioning system (VPS; Vemco PositioningSystem) was used. 6 acoustic receivers (VR2W), 5 synchronization transmitters(Synctag; V13-1L) and 1 control transmitter (Reftag; V13T-1L) were deployed asa pentagonal design. While 89.9% of the signals were captured by at least onereceiver, 62.1% of the signals were determined by at least one receiver in arange of 600 m. This study as being the first for Turkey is expected tocontribute scientific literature for artificial reef studies., Akustik telemetri teknolojisinin yapayresif alanlarındaki canlıların izlenmesinde kullanımına son yirmi yıldarastlanmaktadır. Bu çalışmada yapay resif alanlarında yapılacak telemetriçalışmaları için akustik konumlandırma sistemi tasarımı geliştirilmiş ve etkilialgılama mesafesi (menzil) ve performansı belirlenmiştir. Edremit Körfezi yapayresif alanında Temmuz-Eylül 2013 tarihleri arasında yürütülen araştırmada,Vemco firmasına ait akustik konumlandırma sistemi (VPS; Vemco PositioningSystem) kullanılmıştır. Beşgen şeklindeki VPS tasarımı, 6 adet akustik alıcı(VR2W), 5 adet senkronizasyon vericisi (Synctag; V13-1L) ve 1 adet kontrolvericisinden (Reftag; V13T-1L) meydana gelmiştir. Çalışmada senkronizasyonvericilerden gelen sinyallerin %89,9’u üç ya da daha fazla alıcı tarafındantespit edilmiş, vericilerden gelen sinyallerin %62,1’i 600 m bir alanda en azbir alıcı tarafından belirlenebilmiştir. Ülkemiz için bir ilk olma özelliğitaşıyan bu çalışmanın, yapay resif alanlarında yapılacak bilimsel çalışmalariçin gerekli literatür katkısını sağlaması beklenmektedir.
- Published
- 2016
14. Enzymatic modifications of exopolysaccharides enhance bacterial persistence
- Author
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Gregory B. Whitfield, Lindsey S. Marmont, and P. Lynne Howell
- Subjects
Microbiology (medical) ,lcsh:QR1-502 ,Virulence ,Review ,Biology ,medicine.disease_cause ,Polysaccharide ,Microbiology ,lcsh:Microbiology ,cepacian ,03 medical and health sciences ,Extracellular polymeric substance ,VPS ,medicine ,alginate ,PNAG ,PIA ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,030306 microbiology ,Biofilm ,Biofilm matrix ,Pathogenic bacteria ,PEL ,biology.organism_classification ,Vibrio ,chemistry ,exopolysaccharide ,Bacteria - Abstract
Biofilms are surface-attached communities of bacterial cells embedded in a self-produced matrix that are found ubiquitously in nature. The biofilm matrix is composed of various extracellular polymeric substances, which confer advantages to the encapsulated bacteria by protecting them from eradication. The matrix composition varies between species and is dependent on the environmental niche that the bacteria inhabit. Exopolysaccharides play a variety of important roles in biofilm formation in numerous bacterial species. The ability of bacteria to thrive in a broad range of environmental settings is reflected in part by the structural diversity of the exopolysaccharides produced both within individual bacterial strains as well as by different species. This variability is achieved through polymerization of distinct sugar moieties into homo- or hetero-polymers, as well as post-polymerization modification of the polysaccharide. Specific enzymes that are unique to the production of each polymer can transfer or remove non-carbohydrate moieties, or in other cases, epimerize the sugar units. These modifications alter the physicochemical properties of the polymer, which in turn can affect bacterial pathogenicity, virulence, and environmental adaptability. Herein, we review the diversity of modifications that the exopolysaccharides alginate, the Pel polysaccharide (PEL), Vibrio polysaccharide (VPS), cepacian, glycosaminoglycans (GAGs), and poly-N-acetylglucosamine (PNAG) undergo during biosynthesis. These are exopolysaccharides produced by human pathogenic bacteria for which studies have begun to unravel the effect modifications have on their physicochemical and biological properties. The biological advantages these polymer modifications confer to the bacteria that produce them will be discussed. The expanding list of identified modifications will allow future efforts to focus on linking these modifications to specific biosynthetic genes and biofilm phenotypes.
- Published
- 2015
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15. Sorting of Yeast Membrane Proteins into an Endosome-to-Golgi Pathway Involves Direct Interaction of Their Cytosolic Domains with Vps35p
- Author
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Steven F. Nothwehr, Seon-Ah Ha, and Paul Bruinsma
- Subjects
Saccharomyces cerevisiae Proteins ,Retromer ,Endosome ,protein sorting ,Recombinant Fusion Proteins ,Vesicular Transport Proteins ,Golgi Apparatus ,Receptors, Cell Surface ,Saccharomyces cerevisiae ,Endosomes ,Biology ,Protein Sorting Signals ,medicine.disease_cause ,Models, Biological ,Fungal Proteins ,03 medical and health sciences ,0302 clinical medicine ,Suppression, Genetic ,Protein targeting ,medicine ,Golgi ,Dipeptidyl-Peptidases and Tripeptidyl-Peptidases ,endosome ,030304 developmental biology ,0303 health sciences ,Cell Polarity ,Membrane Proteins ,Cell Biology ,Alkaline Phosphatase ,Cell biology ,Transport protein ,Protein Structure, Tertiary ,Retromer complex ,Protein Transport ,Membrane protein ,VPS29 ,vps ,Mutation ,Original Article ,Carrier Proteins ,Signal Recognition Particle ,030217 neurology & neurosurgery - Abstract
Resident late-Golgi membrane proteins in Saccharomyces cerevisiae are selectively retrieved from a prevacuolar–endosomal compartment, a process dependent on aromatic amino acid–based sorting determinants on their cytosolic domains. The formation of retrograde vesicles from the prevacuolar compartment and the selective recruitment of vesicular cargo are thought to be mediated by a peripheral membrane retromer protein complex. We previously described mutations in one of the retromer subunit proteins, Vps35p, which caused cargo-specific defects in retrieval. By genetic and biochemical means we now show that Vps35p directly associates with the cytosolic domains of cargo proteins. Chemical cross-linking, followed by coimmunoprecipitation, demonstrated that Vps35p interacts with the cytosolic domain of A-ALP, a model late-Golgi membrane protein, in a retrieval signal–dependent manner. Furthermore, mutations in the cytosolic domains of A-ALP and another cargo protein, Vps10p, were identified that suppressed cargo-specific mutations in Vps35p but did not suppress the retrieval defects of a vps35 null mutation. Suppression was shown to be due to an improvement in protein sorting at the prevacuolar compartment. These data strongly support a model in which Vps35p acts as a “receptor” protein for recognition of the retrieval signal domains of cargo proteins during their recruitment into retrograde vesicles.
- Published
- 2000
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