219 results on '"Sahasrabuddhe A"'
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2. Correction to: Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts
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Xinyan Wu, Muhammad Saddiq Zahari, Santosh Renuse, Nandini A. Sahasrabuddhe, Raghothama Chaerkady, Mi-Sik Kim, Mary Jo Fackler, Martha Stampfer, Edward Gabrielson, Saraswati Sukumar, and Akhilesh Pandey
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Medicine - Abstract
Unfortunately, after publication of this article [1], errors were noticed in Figs. 3 and 4.
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- 2018
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3. Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts
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Xinyan Wu, Muhammad Saddiq Zahari, Santosh Renuse, Nandini A. Sahasrabuddhe, Raghothama Chaerkady, Min-Sik Kim, Mary Jo Fackler, Martha Stampfer, Edward Gabrielson, Saraswati Sukumar, and Akhilesh Pandey
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Breast cancer ,Epithelial cell ,Carcinoma-associated fibroblast ,Signaling crosstalk ,SILAC ,Phosphoproteome ,Medicine - Abstract
Abstract Background Cancer-associated fibroblasts (CAFs) are one of the most important components of tumor stroma and play a key role in modulating tumor growth. However, a mechanistic understanding of how CAFs communicate with tumor cells to promote their proliferation and invasion is far from complete. A major reason for this is that most current techniques and model systems do not capture the complexity of signal transduction that occurs between CAFs and tumor cells. Methods In this study, we employed a stable isotope labeling with amino acids in cell culture (SILAC) strategy to label invasive breast cancer cells, MDA-MB-231, and breast cancer patient-derived CAF cells. We used an antibody-based phosphotyrosine peptide enrichment method coupled to LC–MS/MS to catalog and quantify tyrosine phosphorylation-mediated signal transduction events induced by the bidirectional communication between patient-derived CAFs and tumor cells. Results We discovered that distinct signaling events were activated in CAFs and in tumor epithelial cells during the crosstalk between these two cell types. We identified reciprocal activation of a number of receptor tyrosine kinases including EGFR, FGFR1 and EPHA2 induced by this bidirectional communication. Conclusions Our study not only provides insights into the mechanisms of the interaction between CAFs and tumor cells, but the model system described here could be used as a prototype for analysis of intercellular communication in many different tumor microenvironments.
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- 2018
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4. Prevalence of Hypertension and Its Risk Factors among Adults in Rural Community: A Cross-Sectional Study
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Aarti Sahasrabuddhe, Sangeeta Kori, and V. K. Arora
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Rural community ,Epidemiology ,Cross-sectional study ,business.industry ,Environmental health ,Public Health, Environmental and Occupational Health ,Medicine (miscellaneous) ,Medicine ,business - Abstract
Introduction: Hypertension is a chronic condition of concern due to its role in the causation of coronary heart disease, stroke and other vascular complications. Objectives of this study were to find out prevalence of hypertension among adults of rural community and association between hypertension and its risk factors. Methodology: Cross sectional community-based study was done with a sample of 501 adults between 18 to 60 years of age including both men (244) and women (257). A pretested semi-structured proforma was used collect data by trained doctors. Results: The overall prevalence of hypertension was found to be 32.13 %. Higher prevalence found among males (34%), age group 51-60 year (49.5%) and in class III SES (38.9%). Hypertension was found to be significantly associated with family history of hypertension (OR=2.41, CI= 1.50-3.80), smoking (OR= 1.78, CI=1.08-2.93), alcohol use (OR=1.8, CI=1.20-2.60), high salt intake (OR= 3.2, CI=1.80-5.45), junk food consumption (OR=2.40, CI=1.63-3.52), physical inactivity (OR=2.8, CI=1.90-4.14), overweight (OR=3.14, CI=2.11-4.66) and obesity (OR=3.78, CI=2.41-5.95). Conclusion: Increasing prevalence of hypertension in rural areas is major public health problem. Appropriate strategies are needed to create awareness regarding risk factors of hypertension.
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- 2022
5. Cyanobacteria as cell factories: the roles of host and pathway engineering and translational research
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Damini Jaiswal, Pramod P. Wangikar, and Deepti Sahasrabuddhe
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Cyanobacteria ,biology ,Host (biology) ,Cell ,Biomedical Engineering ,Bioengineering ,Translational research ,biology.organism_classification ,Translational Research, Biomedical ,Metabolic engineering ,Synthetic biology ,medicine.anatomical_structure ,Metabolic Engineering ,medicine ,Metabolic modeling ,Synthetic Biology ,Biochemical engineering ,Photosynthesis ,Biotechnology ,Pathway engineering - Abstract
Cyanobacteria, a group of photoautotrophic prokaryotes, are attractive hosts for the sustainable production of chemicals from carbon dioxide and sunlight. However, the rates, yields, and titers have remained well below those needed for commercial deployment. We argue that the following areas will be central to the development of cyanobacterial cell factories: engineered and well-characterized host strains, model-guided pathway design, and advanced synthetic biology tools. Although several foundational studies report improved strain properties, translational research will be needed to develop engineered hosts and deploy them for metabolic engineering. Further, the recent developments in metabolic modeling and synthetic biology of cyanobacteria will enable nimble strategies for strain improvement with the complete cycle of design, build, test, and learn.
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- 2022
6. The development of 'automated visual evaluation' for cervical cancer screening: The promise and challenges in adapting deep‐learning for clinical testing
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Paul Pearlman, Jose Jeronimo, Vikrant V. Sahasrabuddhe, Zhiyun Xue, Mark Schiffman, Ana-Cecilia Rodriguez, Silvia de Sanjosé, Nicole G. Campos, Kanan T Desai, Sameer Antani, Brian Befano, Didem Egemen, David Levitz, Julia C. Gage, and Helen Kelly
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Cervical cancer ,Cancer Research ,medicine.medical_specialty ,Computer science ,business.industry ,Deep learning ,medicine.disease ,Cervical cancer screening ,Triage ,Limited access ,Visual inspection ,Hpv testing ,Oncology ,Assistive technology ,medicine ,Medical physics ,Artificial intelligence ,business - Abstract
There is limited access to effective cervical cancer screening programs in many resource-limited settings, resulting in continued high cervical cancer burden. HPV testing is increasingly recognized to be the preferable primary screening approach if affordable due to superior long-term reassurance when negative and adaptability to self-sampling. Visual inspection with acetic acid (VIA) is an inexpensive but subjective and inaccurate method widely used in resource-limited settings, either for primary screening or for triage of HPV-positive individuals. A deep learning (DL)-based automated visual evaluation (AVE) of cervical images has been developed to help improve the accuracy and reproducibility of VIA as assistive technology. However, like any new clinical technology, rigorous evaluation and proof of clinical effectiveness are required before AVE is implemented widely. In the current paper, we outline essential clinical and technical considerations involved in building a validated DL-based AVE tool for broad use as a clinical test.
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- 2021
7. Effect of Stretching and Strengthening Protocol on Forward Flexed Posture in Post-Menopausal Women
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Sharvari Sahasrabuddhe, Sandeep B. Shinde, and Pradnya P. Ghadage
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medicine.medical_specialty ,business.industry ,Thoracic spine ,Significant difference ,Flexed posture ,Occiput ,Post menopausal ,Postural kyphosis ,Physical medicine and rehabilitation ,medicine.anatomical_structure ,Cog ,Forward head posture ,medicine ,business - Abstract
Background: Forward flexed posture is one of the most common structural change which occurs during menopause due to osteoporosis. Stretching and strengthening of cervical and thoracic spine muscles helps to alter the postural changes and maintain COG. This study thus, aims to see the effectiveness of the structured exercise protocol in post-menopausal women. Aims and Objective: To study the effectiveness of supervised and non-supervised stretching and strengthening protocol in post-menopausal women with forward posture. Materials and Methods: A total 40post-menopausal women with forward head posture were selected on the basis of selection criteria. They were randomly allocated in two groups A) Supervised Group= 20, B) Unsupervised Group=20 each. Forward flexed posture was assessed using Occiput to Wall Test and Craniovertebral Angle. Treatment was explained to both the groups. The pre and post measurements of the participants were recorded. Results: Statistical analysis was performed using the unpaired t test. Occiput to wall test and craniovertebral angle were used as the outcome measures for determining the effect of stretching and strengthening on forward neck posture. Comparing the pre-intervention and post-intervention values of occiput to wall test, a significant difference was seen following administration of protocol (p
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- 2021
8. Cervical cancer prevention and control in women living with human immunodeficiency virus
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Philip E. Castle, Vikrant V. Sahasrabuddhe, and Mark H. Einstein
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medicine.medical_specialty ,Human immunodeficiency virus (HIV) ,Uterine Cervical Neoplasms ,HIV Infections ,medicine.disease_cause ,Immunocompromised Host ,Acquired immunodeficiency syndrome (AIDS) ,Secondary Prevention ,medicine ,Humans ,Papillomavirus Vaccines ,Intensive care medicine ,Early Detection of Cancer ,Cervical cancer ,business.industry ,Public health ,Papillomavirus Infections ,Cancer ,Hematology ,medicine.disease ,Primary Prevention ,Vaccination ,Critical appraisal ,Oncology ,Cervical cancer prevention ,Female ,business ,Precancerous Conditions - Abstract
Despite being highly preventable, cervical cancer is the fourth most common cancer and cause of cancer death in women globally. In low-income countries, cervical cancer is often the leading cause of cancer-related morbidity and mortality. Women living with human immunodeficiency virus (HIV)/acquired immunodeficiency syndrome are at a particularly high risk of cervical cancer because of an impaired immune response to human papillomavirus, the obligate cause of virtually all cervical cancers. Globally, approximately 1 in 20 cervical cancers is attributable to HIV; in sub-Saharan Africa, approximately 1 in 5 cervical cancers is due to HIV. Here, the authors provide a critical appraisal of the evidence to date on the impact of HIV disease on cervical cancer risk, describe key methodologic issues, and frame the key outstanding research questions, especially as they apply to ongoing global efforts for prevention and control of cervical cancer. Expanded efforts to integrate HIV care with cervical cancer prevention and control, and vice versa, could assist the global effort to eliminate cervical cancer as a public health problem.
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- 2021
9. Prevalence of Work-Related Thumb Pain in Physiotherapists
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Hiral Shah, Priya Sahasrabuddhe, and Harshada Agrawal
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musculoskeletal diseases ,medicine.medical_specialty ,business.industry ,THUMB PAIN ,Human factors and ergonomics ,Thumb ,Work related ,Work experience ,medicine.anatomical_structure ,medicine ,Physical therapy ,Manual therapy ,business ,human activities - Abstract
Background: Physiotherapy is associated with job tasks that are physically challenging and some of the routine procedures include manual therapy and soft tissue mobilizations which require higher levels of force and may be performed in hazardous or awkward postures. This study was done to find out the prevalence of work-related thumb pain amongst Physiotherapists and also to assess the awareness about the thumb pain and ergonomic strategies to reduce the same. Objectives: 1. To find the prevalence of Work-Related Thumb Pain (WRTP) in Physiotherapists 2. To assess the awareness of ergonomics related to WRTP in Physiotherapists 3. To find the coping strategies used by the Physiotherapists for WRTP Methods: 94 Physiotherapists from various setups in Pune city, with a basic qualification in B.P.Th. having a work experience of minimum 2 years and having minimum 20 hours of clinical duties per week and performing manual therapy techniques on patients were included in the study. Results: The overall prevalence came to 68.1%. 94.7% of the respondents were aware about the ergonomic strategies to prevent/reduce thumb pain and 5.3% were not aware about the same. Multiple coping strategies were used by the Physiotherapists, of which changing or modifying their treatment, modifying either the patient’s position or their position, asking to help handle a heavy patient were the most common ones. Conclusion: This study indicates that thumb problems are common in Physiotherapists. Key words: Physiotherapists, thumb pain, ergonomic strategies, coping strategies.
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- 2021
10. Prevalence of Musculoskeletal Pain and Injuries in Gym Instructors
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Nikita Shinde and Priya Sahasrabuddhe
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Musculoskeletal pain ,030222 orthopedics ,medicine.medical_specialty ,business.industry ,Cross-sectional study ,High intensity ,education ,030229 sport sciences ,03 medical and health sciences ,0302 clinical medicine ,Physical therapy ,medicine ,business ,human activities ,Low back - Abstract
Background: The gym instructors perform high intensity work during their personal session or while assisting their clients during their workout session. This is one of the major reasons for various injuries and subsequent pain. This study evaluated the prevalence of musculoskeletal pain and injuries in gym instructors. Objectives: To obtain the prevalence of musculoskeletal injuries and pain in gym instructors. Methods: A cross sectional study was performed on108 gym instructors from different fitness clubs. A self-administered questionnaire was used. Percentile analysis of the scores was done. Results: 16% of gym instructors suffered with injures of shoulder, low back and knee. About 82% of gym instructors had pain in various body areas. Conclusion: The prevalence of pain and injuries was high in gym instructors which demands fitness industries to adapt prevention strategies. Key words: Gym instructors, musculoskeletal pain, injury
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- 2021
11. A Chimera of Th1 Stimulatory Proteins of Leishmania donovani Offers Moderate Immunotherapeutic Efficacy with a Th1-Inclined Immune Response against Visceral Leishmaniasis
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Sneha Ratnapriya, Keerti, Amogh A. Sahasrabuddhe, Narendra Kumar Yadav, and Anuradha Dube
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0301 basic medicine ,Article Subject ,General Immunology and Microbiology ,biology ,Immunogenicity ,medicine.medical_treatment ,030231 tropical medicine ,Leishmania donovani ,General Medicine ,Immunotherapy ,biology.organism_classification ,medicine.disease ,Leishmania ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Visceral leishmaniasis ,Immune system ,Antigen ,Immunology ,medicine ,Medicine ,Adjuvant - Abstract
Immunotherapy, a treatment based on host immune system activation, has been shown to provide a substitute for marginally effective conventional chemotherapy in controlling visceral leishmaniasis (VL), the deadliest form of leishmaniasis. As the majority of endemic inhabitants exhibit either subclinical or asymptomatic infection which often develops into the active disease state, therapeutic intervention seems to be an important avenue for combating infections by stimulating the natural defense system of infected individuals. With this perspective, the present study focuses on two immunodominant Leishmania (L.) donovani antigens (triosephosphate isomerase and enolase) previously proved to be potent prophylactic VL vaccine candidates, for generating a recombinant chimeric antigen. This is based on the premise that in a heterogeneous population, a multivalent antigen vaccine would be required for an effective response against leishmaniasis (a complex parasitic disease). The resulting molecule rLdT-E chimeric protein was evaluated for its immunogenicity and immunotherapeutic efficacy. A Th1 stimulating adjuvant BCG was employed with the protein which showed a remarkable 70% inhibition of splenic parasitic multiplication positively correlated with boosted Th1 dominant immune response against lethal L. donovani challenge in hamsters as evidenced by high IFN-γ and TNF-α and low IL-10. In addition, immunological analysis of antibody subclass presented IgG2-based humoral response besides considerable delayed-type hypersensitivity and lymphocyte proliferative responses in rLdT-E/BCG-treated animals. Our observations indicate the potential of the chimera towards its candidature for an effective vaccine against Leishmania donovani infection.
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- 2021
12. EFFICACY OF USG GUIDED FASCIA ILIACA COMPARTMENT BLOCK AS POSTOPERATIVE ANALGESIA IN PROXIMAL FRACTURE FEMUR
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Loya Shilpa J, Joshi Pradnya S, J Kulkarni Sanhita, Bhale Pramod, Sasturkar Vasanti M, and Sahasrabuddhe Saumil S
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03 medical and health sciences ,0302 clinical medicine ,030202 anesthesiology ,business.industry ,Block (telecommunications) ,Medicine ,030208 emergency & critical care medicine ,Fascia iliaca ,Anatomy ,Fracture femur ,Compartment (pharmacokinetics) ,business - Abstract
Background Fascia iliaca compartment nerve block (FICNB) has been reported to provide effective postoperative analgesia in patients with femur fracture. This study aimed to evaluate the effectiveness of FICNB with Bupivacaine and Dexamethasone for postoperative analgesia in proximal fracture femur. Methods Sixty-four patients of ASA grade 1 to 3, aged 50-80 years scheduled for proximal femur fracture femur were included and randomly assigned to two groups of 32 patients each Group F received ultrasound guided(FICNB) with 0.25% 40ml of Bupivacaine & Dexamethasone 4 mg & Group T received Tramadol 50mg at the end of surgery. Postoperative pain was assessed at 30 minutes, 2 hours, 4 hours, 6 hours, 8 hours, 12 hours and 24 hours using visual analogue scale (VAS). Injection Paracetamol 1gm was given intravenously as rescue analgesia in both the groups when VAS was more than four. Results Both the groups were comparable for demographic parameters. The mean duration of analgesia was 460.31±10.50 minutes in the FICNB group while it was only 263.72±12.85 minutes in the tramadol group, the difference being statistically significant (with a ‘p value’ of 0.001). The total consumption of paracetamol did not show a significant difference in either of the groups in the first 24 hours, the ‘p value’ being 0.406. Conclusion Ultrasound guided FICNB given postoperatively in patients undergoing proximal fracture femur can provide postoperative pain relief for longer duration than Inj. Tramadol.
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- 2020
13. Preventive as well as therapeutic significances of linoleic acid in the containment of Leishmania donovani infection
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Chandreshwar Prasad Thakur, Sheetal Saini, Sarath Kumar Kottarath, Anuradha Dube, Ambak Kumar Rai, Amogh A. Sahasrabuddhe, Amit K. Dinda, and Madhusudan Bhat
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Adult ,Male ,0301 basic medicine ,Adolescent ,Linoleic acid ,Leishmania donovani ,Biochemistry ,Parasite load ,Cyclooxygenase pathway ,Linoleic Acid ,03 medical and health sciences ,chemistry.chemical_compound ,Immune system ,Essential fatty acid ,Animals ,Humans ,Medicine ,chemistry.chemical_classification ,Immunity, Cellular ,Mesocricetus ,030102 biochemistry & molecular biology ,biology ,business.industry ,Fatty acid ,General Medicine ,Th1 Cells ,biology.organism_classification ,medicine.disease ,030104 developmental biology ,Visceral leishmaniasis ,chemistry ,Immunology ,Leishmaniasis, Visceral ,Female ,business - Abstract
People suffering from malnutrition show compromised levels of ω-6 fatty acid and malnutrition is frequently observed among visceral leishmaniasis (VL) patients as disease inflicts primarily the socioeconomic destitute communities. Dietary linoleic acid (LA, 18:2; ω-6 fatty acid) is the principal source of essential fatty acid and its derivatives i.e. eicosanoids possess immune-modulatory activities. However, its role in VL is not yet established. LA was measured in VL human subjects (serum) as well as in Leishmania(L.)donovani infected hamsters (serum and visceral organs). Organ-specific mRNA expressions of various enzymes of the LA metabolic pathway were measured in visceral organs of infected hamsters. Our findings showed a decrease in the concentrations of LA in the serum samples of VL patients, suggesting malnutrition among these patients. However, in L. donovani infected hamsters, its level was not altered in the early infection (15 days) and then increased at late infection (60 days). Importantly, the supplementation of LA restored the Th-1 type of immune response and significantly reduced the parasite load within infected macrophages in vitro. This protective response of LA was mediated through 5-lipoxygenase pathway not via the cyclooxygenase pathway. Preventive usage of LA to mϕ followed by L. donovani infection also showed the strengthening of Th-1 immune response and significantly fewer parasite loads. Our findings demonstrate the protective role of LA in the containment of the parasite load. Incorporating LA rich oils in daily food habits across highly inflicted regions may be a significant advancement towards the eradication of the disease.
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- 2020
14. Insulin signalling in RBC is responsible for growth stimulation of malaria parasite in diabetes patients
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Amogh A. Sahasrabuddhe, S.N. Balaji, and Vishal Trivedi
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0301 basic medicine ,Erythrocytes ,Glucose uptake ,medicine.medical_treatment ,Plasmodium falciparum ,Biophysics ,Parasitemia ,In Vitro Techniques ,Carbohydrate metabolism ,Biochemistry ,Host-Parasite Interactions ,Diabetes Complications ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Diabetes mellitus ,medicine ,Animals ,Humans ,Insulin ,Malaria, Falciparum ,Phosphorylation ,Receptor ,Molecular Biology ,biology ,Cell Biology ,medicine.disease ,Cytoskeletal Proteins ,Insulin receptor ,Glucose ,030104 developmental biology ,030220 oncology & carcinogenesis ,Immunology ,biology.protein ,Signal Transduction - Abstract
A cross-talk between diabetes and malaria within-host is well established. Diabetes is associated with modulation of the immune system, impairment of the healing process and to disturb the host metabolism to contribute towards propagation of parasite infection. Glucose metabolism in host is maintained by insulin and RBC has 2000 insulin receptor present on plasma membrane. These receptors are robust to relay down-stream signaling in RBCs but role of intracellular signaling in parasite growth is not been explored. The malaria parasite treated with insulin (100 ng/ml) is giving stimulation in parasite growth. The effect is lasting for several generations resulting into high parasitemia. Insulin signaling is phosphorylating protein in infected RBCs and level is high in parasite RBCs compared to uninfected RBCs. It is phosphorylating Spectrin-(α/β), Band-4.2, Ankyrin and the other proteins of RBC cytoskeleton. It in-turn induces enhanced glucose uptake inside infected RBCs. There is a high level of infection of normal RBCs by merozoites. In summary, insulin and glucose metabolism plays a crucial role in parasite propagation, disease severity and need consideration while treating patients.
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- 2020
15. Pathogenic gene expression of epicardial adipose tissue in patients with coronary artery disease
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Atul P. Daiwile, Purushottam K. Deshpande, Shailesh U Pitale, Saravanadevi Sivanesan, Swapnil P Deshpande, and Anagha Sahasrabuddhe
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Male ,0301 basic medicine ,Homocysteine ,medicine.medical_treatment ,lcsh:Medicine ,Gene Expression ,Coronary Artery Disease ,Coronary artery disease ,chemistry.chemical_compound ,0302 clinical medicine ,CAD ,030212 general & internal medicine ,Coronary Artery Bypass ,Metabolic Syndrome ,medicine.diagnostic_test ,paracrine ,Leptin ,General Medicine ,Middle Aged ,EAT ,medicine.anatomical_structure ,Adipose Tissue ,Female ,Original Article ,Adiponectin ,Pericardium ,Artery ,Adult ,medicine.medical_specialty ,030106 microbiology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Internal medicine ,medicine ,Vitamin D and neurology ,Humans ,Obesity ,Aged ,inflammatory biomarkers ,business.industry ,Insulin ,Myocardium ,lcsh:R ,medicine.disease ,adiponectin - cad - eat - inflammatory biomarkers - mcp-1 - paracrine ,Endocrinology ,chemistry ,Commentary ,business ,Lipid profile ,MCP-1 - Abstract
Background & objectives: Coronary artery disease (CAD), a leading cause of mortality and morbidity worldwide has multifactorial origin. Epicardial adipose tissue (EAT) has complex mechanical and thermogenic functions and paracrine actions via various cytokines released by it, which can have both pro- and anti-inflammatory actions on myocardium and adjacent coronaries. The alteration of EAT gene expression in CAD is speculated, but poorly understood. This study was undertaken to find out the difference in gene expression of epicardial fat in CAD and non-CAD patients. Methods: Twenty seven patients undergoing coronary artery bypass graft (CABG) and 16 controls (non-CAD patients undergoing valvular heart surgeries) were included in the study and their EAT samples were obtained. Gene expressions of uncoupling protein-1, monocyte chemoattractant protein-1 (MCP-1), adiponectin, adenosine A1 receptor (ADORA-1), vascular cell adhesion molecule-1 (VCAM-1) and tumour necrosis factor-alpha (TNF-α) were studied by real-time reverse transcription-polymerase chain reaction. Glucose, insulin, lipid profile, high-sensitivity C-reactive protein, homocysteine, vitamin D, TNF-α and leptin levels were estimated in fasting blood samples and analyzed. Results: Leptin levels were significantly higher in CABG group as compared to controls (P
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- 2020
16. A prospective study to evaluate the utility of bronchoalveolar lavage by fiberoptic bronchoscopy in sputum smear negative patients with high suspicion of pulmonary tuberculosis
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Ritesh Kamal, Rakesh Sharma, Tushar Sahasrabuddhe, Sanantha K Dash, Mujeeb Showkat, and Nitin S Gaikwad
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Bronchoalveolar lavage ,fiberoptic bronchoscopy ,pulmonary tuberculosis ,Medicine - Abstract
Aim: To evaluate the utility of bronchoalveolar lavage (BAL) by flexible fiberoptic bronchoscopy (FOB) in sputum smear negative patients with clinical and radiological characteristics of pulmonary tuberculosis (PTB). Materials and Methods: This prospective study was carried out in 30 sputum smear negative patients of age group 20 to 70 years, who were highly suspicious for PTB by clinical and radiographic criteria. All patients were subjected to sputum culture, BAL stains and cultures, and cytopathology. Patients with moderate to massive pleural effusion, obvious accessible lymph node, history of antitubercular therapy (ATT), and contraindication to FOB were excluded. Results: Sputum culture for acid fast bacilli (AFB) was positive in four (12%) patients, BAL fluid was positive for Ziehl-Neelsen (ZN) stain in nine (27%) patients, including four sputum culture patients, while BAL culture for AFB on Lowenstein-Jensen (LJ) medium was positive in 18 (60%), including 9 BAL fluid ZN stain positive patients. Six (20%) patients had growth on pyogenic culture, while two (7%) patients had malignant cell on cytological examination of BAL fluid. Remaining four (13%) patients were empirically started on ATT. They had complete response to ATT at 2 months and were retrospectively diagnosed with pulmonary tuberculosis (PTB). All the bacteriologically confirmed PTB patients were given ATT for 6 months and all patients had complete response. Conclusion: We concluded that FOB guided BAL is extremely useful for establishing diagnosis of PTB or other pulmonary diseases in sputum smear negative patients, who have high suspicion for PTB by clinical and radiographic criteria.
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- 2012
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17. Population-level scale-up of cervical cancer prevention services in a low-resource setting: development, implementation, and evaluation of the cervical cancer prevention program in Zambia.
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Groesbeck P Parham, Mulindi H Mwanahamuntu, Sharon Kapambwe, Richard Muwonge, Allen C Bateman, Meridith Blevins, Carla J Chibwesha, Krista S Pfaendler, Victor Mudenda, Aaron L Shibemba, Samson Chisele, Gracilia Mkumba, Bellington Vwalika, Michael L Hicks, Sten H Vermund, Benjamin H Chi, Jeffrey S A Stringer, Rengaswamy Sankaranarayanan, and Vikrant V Sahasrabuddhe
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Medicine ,Science - Abstract
BackgroundVery few efforts have been undertaken to scale-up low-cost approaches to cervical cancer prevention in low-resource countries.MethodsIn a public sector cervical cancer prevention program in Zambia, nurses provided visual-inspection with acetic acid (VIA) and cryotherapy in clinics co-housed with HIV/AIDS programs, and referred women with complex lesions for histopathologic evaluation. Low-cost technological adaptations were deployed for improving VIA detection, facilitating expert physician opinion, and ensuring quality assurance. Key process and outcome indicators were derived by analyzing electronic medical records to evaluate program expansion efforts.FindingsBetween 2006-2013, screening services were expanded from 2 to 12 clinics in Lusaka, the most-populous province in Zambia, through which 102,942 women were screened. The majority (71.7%) were in the target age-range of 25-49 years; 28% were HIV-positive. Out of 101,867 with evaluable data, 20,419 (20%) were VIA positive, of whom 11,508 (56.4%) were treated with cryotherapy, and 8,911 (43.6%) were referred for histopathologic evaluation. Most women (87%, 86,301 of 98,961 evaluable) received same-day services (including 5% undergoing same-visit cryotherapy and 82% screening VIA-negative). The proportion of women with cervical intraepithelial neoplasia grade 2 and worse (CIN2+) among those referred for histopathologic evaluation was 44.1% (1,735/3,938 with histopathology results). Detection rates for CIN2+ and invasive cervical cancer were 17 and 7 per 1,000 women screened, respectively. Women with HIV were more likely to screen positive, to be referred for histopathologic evaluation, and to have cervical precancer and cancer than HIV-negative women.InterpretationWe creatively disrupted the 'no screening' status quo prevailing in Zambia and addressed the heavy burden of cervical disease among previously unscreened women by establishing and scaling-up public-sector screening and treatment services at a population level. Key determinants for successful expansion included leveraging HIV/AIDS program investments, and context-specific information technology applications for quality assurance and filling human resource gaps.
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- 2015
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18. Osteogenesis Imperfecta- An Anaesthesiologist’s Challenge
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Sravya Adda, Ila, C Manisha, and Anupama Sahasrabuddhe
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musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Pediatrics ,medicine.medical_specialty ,lcsh:R5-130.5 ,business.industry ,Osteogenesis imperfecta ,medicine ,osteogenesis imperfecta ,skin and connective tissue diseases ,business ,medicine.disease ,lcsh:General works - Abstract
We present a case of 26 year male posted for shaft of femur fracture with history of osteogenesis imperfecta tarda type IV with severe anatomical deformities who underwent nailing procedure. Procedure was undertaken under general anaesthesia and epidural catheter was inserted postoperatively for management of pain. A 26-year old male presented with fracture shaft left femur and was planned for nailing procedure electively. He was a known case of osteogenesis imperfecta tarda type-IV with characteristic features of short stature, brittle bones, hypermobile joints, kyphoscoliosis and history of recurrent fractures of long bones for which he was operated previously twice under general anaesthesia, which was uneventful. Patient’s sister is also a patient of osteogenesis imperfecta tarda type IV.
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- 2019
19. Comparison Between Immuno-Clinicopathological Features of Experimental and Human Visceral Leishmaniasis by Leishmania donovani
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Amogh A. Sahasrabuddhe, Chandreshwar Prasad Thakur, Keerti Rawat, Ambak Kumar Rai, Sheetal Saini, Sumit Joshi, and Anuradha Dube
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,030231 tropical medicine ,Leishmania donovani ,Hamster ,030308 mycology & parasitology ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Medical microbiology ,Cricetinae ,parasitic diseases ,medicine ,Animals ,Humans ,DNA Primers ,0303 health sciences ,Mesocricetus ,biology ,DNA, Protozoan ,biology.organism_classification ,medicine.disease ,Disease Models, Animal ,Visceral leishmaniasis ,Parasitology ,Splenomegaly ,Immunology ,Cytokines ,Leishmaniasis, Visceral ,Alkaline phosphatase ,Female ,Hepatomegaly ,Golden hamster - Abstract
Current understanding of visceral leishmaniasis (VL) depends upon the experimental model. Different species of mouse and hamster have been used as model for VL. It is already evident that the mouse model of VL is not a true reflection of the pathology of human visceral leishmaniasis (HuVL). On the other hand, hamster is reported to be a better model of VL to study the progressive as well as chronic pathology of the disease. To compare immuno-clinicopathological features of experimental VL (ExVL) and HuVL by Leishmania donovani. Hamsters were infected (15 and 60 days) and their immunological, clinical and biochemical parameters were compared with the cases of HuVL. Splenomegaly and hepatomegaly were observed in infected hamster post-infection, which are hallmarks of symptomatic HuVL cases. Clinical, biochemical and pathological manifestations of infected hamsters were consistent with that of HuVL cases, except parameters such as body weight, uric acid, alkaline phosphatase and random glucose. The absence of clear dichotomy between pro- and anti-inflammatory cytokines was also observed after infection at different sites of infection. Our results suggest that the golden hamster (Mesocricetus auratus), infected via the intracardiac route, constitutes a very good model for the study of experimental Leishmania donovani infections. However, certain differences in clinical presentations of infected hamsters (via intracardiac route) with HuVL suggest further optimization of this animal model like route of infection such as intradermal, which is more close to natural infection.
- Published
- 2019
20. A prospective, single-arm, open-label, non-randomized, phase IIa trial of a nonavalent prophylactic HPV vaccine to assess immunogenicity of a prime and deferred-booster dosing schedule among 9–11 year-old girls and boys – clinical protocol
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Eva Szabo, Heide Woo, Eileen Dimond, Yi Zeng, Susan Vanzzini, Francisco A.R. Garcia, Chiu Hsieh Hsu, Vikrant V. Sahasrabuddhe, Anna-Barbara Moscicki, H.-H. Sherry Chow, Hillary DeRose, Angelica Mondragon, and Valerie D. Butler
- Subjects
Male ,0301 basic medicine ,Cancer Research ,Pediatrics ,medicine.medical_specialty ,Human papillomavirus ,Serologic geometric mean titer ,Booster dose ,Antibodies, Viral ,Nonavalent HPV vaccine ,lcsh:RC254-282 ,Genital warts ,Study Protocol ,03 medical and health sciences ,Immunogenicity, Vaccine ,0302 clinical medicine ,Genetics ,medicine ,Humans ,Papillomavirus Vaccines ,Prospective Studies ,Child ,Immunization Schedule ,HPV vaccine ,Cervical cancer ,Reactogenicity ,business.industry ,Immunogenicity ,Papillomavirus Infections ,Antibody titer ,Gardasil 9 ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,3. Good health ,Regimen ,Titer ,Treatment Outcome ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Female ,business - Abstract
Background Human papillomavirus (HPV) vaccines are indicated for the prevention of cancers and genital warts caused by vaccine-covered HPV types. Although the standard regimen requires a two or three-dose vaccine series, there is emerging data suggesting that a single dose of the bivalent or quadrivalent HPV vaccine generates persistently positive antibody titers. No similar data is yet available for the nonavalent HPV vaccine, currently the only HPV vaccine available in the United States. The overall objective of our study is to assess the stability and kinetics of antibody titers for 24 months following a single dose of the nonavalent HPV vaccine among preteen girls and boys. Methods This is a prospective, single-arm, open-label, non-randomized, Phase IIa trial among 9–11 year-old girls and boys to determine the immunogenicity after a single dose of the nonavalent HPV vaccine (GARDASIL® 9) over 24 months, with a deferred booster dose at 24 months and an optional booster at 30 months after the first dose. Participants provide blood specimens at 6, 12, 18, 24, and 30 months after the first dose. Serologic geometric mean titers (GMT) of the nine vaccine types (HPV 16/18/ 6/11/31/33/45/52/58) will be measured at each time point. The primary objective is to determine the stability of type-specific serologic GMT of HPV16 and HPV18 between the 6- vs. 12-month, 12- vs. 18-month, and 18- vs. 24-month visits. Secondary objectives are to determine the stability of type-specific serologic GMT of the other HPV types (HPV 6/11/31/33/45/52/58) between the visits and to assess safety and reactogenicity after each vaccine dose. Discussion Single dose HPV vaccination could simplify the logistics and reduce costs of HPV vaccination in the US and across the world. This study will contribute important immunogenicity data on the stability and kinetics of type-specific antibody titers and inform feasibility of the single dose HPV vaccination paradigm. Trial registration ClinicalTrials.gov Identifier: NCT02568566. Registered on October 6, 2015. Electronic supplementary material The online version of this article (10.1186/s12885-019-5444-4) contains supplementary material, which is available to authorized users.
- Published
- 2019
21. Nucleosomal histone proteins of L. donovani: a combination of recombinant H2A, H2B, H3 and H4 proteins were highly immunogenic and offered optimum prophylactic efficacy against Leishmania challenge in hamsters.
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Rajendra K Baharia, Rati Tandon, Amogh A Sahasrabuddhe, Shyam Sundar, and Anuradha Dube
- Subjects
Medicine ,Science - Abstract
The present study includes cloning and expression of recombinant Leishmania donovani histone proteins (rLdH2B, rLdH3, rLdH2A and rLdH4), assessment of their immunogenicity in Leishmania infected cured patients/endemic contacts as well as in cured hamsters and finally evaluation of their prophylactic efficacy in hamsters against L. donovani challenge. All recombinant proteins were expressed and purified from the heterologous bacterial host system. Leishmania infected cured patients/endemic contacts as well as cured hamsters exhibited significantly higher proliferative responses to individual recombinant histones and their pooled combination (rLdH2B+rLdH3+rLdH2A+rLdH4) than those of L.donovani infected hosts. The L.donovani soluble antigens (SLD) stimulated PBMCs of cured/exposed and Leishmania patients to produce a mixed Thl/Th2-type cytokine profile, whereas rLdH2B, rLdH3, rLdH2A, rLdH4 and pooled combination (rLdH2-4) stimulated the production of Th1 cytokines IFN-γ, IL-12 and TNF-α but not Th2 cytokines IL-4 or IL-10. The immunogenicity of these histone proteins along with their combination was also checked in cured hamsters where they stimulated higher lymphoproliferation and Nitric oxide production in lymphocytes of cured hamsters than that of infected controls. Moreover, significantly increased IgG2 response, an indicative of cell mediated immunity, was observed in cured hamsters against these individual proteins and their combination as compared to infected hamsters. Further, it was demonstrated that rLdH2B, rLdH3, rLdH2A and rLdH4 and pooled combination were able to provide considerable protection for hamsters against L. donovani challenge. The efficacy was supported by the increased inducible Nitric Oxide Synthase (iNOS) mRNA transcripts and Th1-type cytokines--IFN-γ, IL-12 and TNF-α and down-regulation of IL-4, IL-10 and TGF-β. Hence, it is inferred that pooled rLdH2-4 elicits Thl-type of immune responses exclusively and confer considerable protection against experimental Visceral Leishmaniasis.
- Published
- 2014
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22. Characterization of glycolytic enzymes--rAldolase and rEnolase of Leishmania donovani, identified as Th1 stimulatory proteins, for their immunogenicity and immunoprophylactic efficacies against experimental visceral leishmaniasis.
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Reema Gupta, Vikash Kumar, Pramod Kumar Kushawaha, Chandradev Pati Tripathi, Sumit Joshi, Amogh Anant Sahasrabuddhe, Kalyan Mitra, Shyam Sundar, Mohammad Imran Siddiqi, and Anuradha Dube
- Subjects
Medicine ,Science - Abstract
Th1 immune responses play an important role in controlling Visceral Leishmaniasis (VL) hence, Leishmania proteins stimulating T-cell responses in host, are thought to be good vaccine targets. Search of such antigens eliciting cellular responses in Peripheral blood mononuclear cells (PBMCs) from cured/exposed/Leishmania patients and hamsters led to the identification of two enzymes of glycolytic pathway in the soluble lysate of a clinical isolate of Leishmania donovani--Enolase (LdEno) and aldolase (LdAld) as potential Th1 stimulatory proteins. The present study deals with the molecular and immunological characterizations of LdEno and LdAld. The successfully cloned and purified recombinant proteins displayed strong ability to proliferate lymphocytes of cured hamsters' along with significant nitric-oxide production and generation of Th1-type cytokines (IFN-γ and IL-12) from stimulated PBMCs of cured/endemic VL patients. Assessment of their prophylactic potentials revealed ∼ 90% decrease in parasitic burden in rLdEno vaccinated hamsters against Leishmania challenge, strongly supported by an increase in mRNA expression levels of iNOS, IFN-γ, TNF-α and IL-12 transcripts along with extreme down-regulation of TGF-β, IL-4 and IL-10. However, animals vaccinated with rLdAld showed comparatively lesser prophylactic efficacy (∼ 65%) with inferior immunological response. Further, with a possible implication in vaccine design against VL, identification of potential T-cell epitopes of both the proteins was done using computational approach. Additionally, in-silico 3-D modelling of the proteins was done in order to explore the possibility of exploiting them as potential drug targets. The comparative molecular and immunological characterizations strongly suggest rLdEno as potential vaccine candidate against VL and supports the notion of its being effective T-cell stimulatory protein.
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- 2014
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23. Proteomic Analysis of the Human Anterior Pituitary Gland
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Nandini A. Sahasrabuddhe, Anil K. Madugundu, Anita Mahadevan, Parthasarathy Satishchandra, M. Rajyalakshmi, Rakhil Akkali, Jayshree Advani, Susarla K. Shankar, Sandip Chavan, Pradeep Kumar, Pinaki Dutta, Saraswatipura Vishwabrahmachar Reshma, Sudarshan Kumar, Premendu P. Mathur, Anil Bhansali, Harsha Gowda, Susanta K. Ghosh, Priti Saxena, Apabrita Ayan Das, Keshava K. Datta, Varshasnata Mohanty, Vamshi Krishna Irlapati, Aditi Chatterjee, G. William Wong, Dhiman Ghosh, Gourav Dey, Márta Korbonits, Sangita Rastogi, Manoj Panchal, Soundappan S. Mohanraj, T. S. Keshava Prasad, Nabonita Sengupta, Ankur Tyagi, Bishan D. Radotra, Haritha H. Nair, Mansi Ashwinsinh Sarvaiya, Abhishek Chaturvedi, Keshav K Saini, Akhilesh Pandey, Amit Kumar, Pradeep Annamalai Subramani, Ramachandran Sarojini Santhosh, Anand Srinivasan, Gajendra M. Jogdand, and Soujanya D. Yelamanchi
- Subjects
Proteomics ,0301 basic medicine ,medicine.medical_specialty ,Proteome ,Biology ,Biochemistry ,Mass Spectrometry ,03 medical and health sciences ,0302 clinical medicine ,Anterior pituitary ,Pituitary Gland, Anterior ,Internal medicine ,Genetics ,medicine ,Humans ,Molecular Biology ,Research Articles ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,Hypothalamus ,Molecular Medicine ,030217 neurology & neurosurgery ,Function (biology) ,Chromatography, Liquid ,Biotechnology ,Hormone - Abstract
The pituitary function is regulated by a complex system involving the hypothalamus and biological networks within the pituitary. Although the hormones secreted from the pituitary have been well studied, comprehensive analyses of the pituitary proteome are limited. Pituitary proteomics is a field of postgenomic research that is crucial to understand human health and pituitary diseases. In this context, we report here a systematic proteomic profiling of human anterior pituitary gland (adenohypophysis) using high-resolution Fourier transform mass spectrometry. A total of 2164 proteins were identified in this study, of which 105 proteins were identified for the first time compared with high-throughput proteomic-based studies from human pituitary glands. In addition, we identified 480 proteins with secretory potential and 187 N-terminally acetylated proteins. These are the first region-specific data that could serve as a vital resource for further investigations on the physiological role of the human anterior pituitary glands and the proteins secreted by them. We anticipate that the identification of previously unknown proteins in the present study will accelerate biomedical research to decipher their role in functioning of the human anterior pituitary gland and associated human diseases.
- Published
- 2018
24. Adult neural stem cells have latent inflammatory potential that is kept suppressed by Tcf4 to facilitate adult neurogenesis
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Nruthyathi, Sreevatsan Krishna, Ravishankara Bellampalli, Vinaya Sahasrabuddhe, Hiyaa S. Ghosh, Rajit Narayanan Cheramangalam, Swathi Radha, Anukriti Dwivedi, Mohammad Shariq, Boris Reizis, and Jean M. Hébert
- Subjects
Neurogenesis ,Mice, Transgenic ,Inflammation ,Biology ,Hippocampal formation ,Mice ,03 medical and health sciences ,Transcription Factor 4 ,0302 clinical medicine ,Neural Stem Cells ,medicine ,Animals ,Progenitor cell ,Transcription factor ,Research Articles ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Dentate gyrus ,SciAdv r-articles ,TCF4 ,Neural stem cell ,Cell biology ,Mice, Inbred C57BL ,Cellular Neuroscience ,Dentate Gyrus ,medicine.symptom ,030217 neurology & neurosurgery ,Research Article ,Neuroscience - Abstract
Neural stem cells in the adult brain have inflammatory potential that is kept suppressed by psychiatric disease gene Tcf4., Inflammation is known to adversely affect adult neurogenesis, wherein the source of inflammation is largely thought to be extraneous to the neurogenic niche. Here, we demonstrate that the adult hippocampal neural progenitors harbor an inflammatory potential that is proactively suppressed by transcription factor 4 (Tcf4). Deletion of Tcf4 in hippocampal nestin-expressing progenitors causes loss of proliferative capacity and acquisition of myeloid inflammatory properties. This transformation abolishes their differentiation potential and causes production of detrimental factors that adversely affect niche cells, causing inflammation in the dentate gyrus. Thus, on one hand, Tcf4 deletion causes abrogation of proliferative progenitors leading to reduction of adult neurogenesis, while on the other, their accompanying inflammatory transformation inflicts inflammation in the niche. Taken together, we provide the first evidence for a latent inflammatory potential of adult hippocampal neural progenitors and identify Tcf4 as a critical regulator that facilitates adult neurogenesis via proactive suppression of this detrimental potential.
- Published
- 2021
25. Correction: Nucleosomal Histone Proteins of L. donovani: A Combination of Recombinant H2A, H2B, H3 and H4 Proteins Were Highly Immunogenic and Offered Optimum Prophylactic Efficacy against Leishmania Challenge in Hamsters
- Author
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Anuradha Dube, Amogh A. Sahasrabuddhe, Shyam Sundar, Rajendra K. Baharia, and Rati Tandon
- Subjects
Male ,Gene Expression ,lcsh:Medicine ,Protozoology ,Biochemistry ,law.invention ,Histones ,law ,Zoonoses ,Cricetinae ,Molecular Cell Biology ,lcsh:Science ,Immune Response ,Leishmaniasis ,Protozoans ,Leishmania ,Immune System Proteins ,Multidisciplinary ,Immunogenicity ,Histone Modification ,Animal Models ,Middle Aged ,Vaccination and Immunization ,Recombinant Proteins ,Veterinary Diseases ,Recombinant DNA ,Medicine ,Cytokines ,Leishmaniasis, Visceral ,Epigenetics ,Female ,Research Article ,Adult ,Adolescent ,Science ,Immunology ,Leishmania donovani ,Heterologous ,Antigens, Protozoan ,Biology ,Research and Analysis Methods ,Microbiology ,Peripheral blood mononuclear cell ,Young Adult ,Model Organisms ,Immune system ,Antigen ,parasitic diseases ,Genetics ,Animals ,Humans ,Immunity to Infections ,Mesocricetus ,lcsh:R ,Organisms ,Immunity ,Biology and Life Sciences ,Proteins ,Correction ,Cell Biology ,Molecular Development ,biology.organism_classification ,Parasitic Protozoans ,Immune System ,Veterinary Science ,lcsh:Q ,Immunization ,Developmental Biology - Abstract
The present study includes cloning and expression of recombinant Leishmania donovani histone proteins (rLdH2B, rLdH3, rLdH2A and rLdH4), assessment of their immunogenicity in Leishmania infected cured patients/endemic contacts as well as in cured hamsters and finally evaluation of their prophylactic efficacy in hamsters against L. donovani challenge. All recombinant proteins were expressed and purified from the heterologous bacterial host system. Leishmania infected cured patients/endemic contacts as well as cured hamsters exhibited significantly higher proliferative responses to individual recombinant histones and their pooled combination (rLdH2B+rLdH3+rLdH2A+rLdH4) than those of L.donovani infected hosts. The L.donovani soluble antigens (SLD) stimulated PBMCs of cured/exposed and Leishmania patients to produce a mixed Thl/Th2-type cytokine profile, whereas rLdH2B, rLdH3, rLdH2A, rLdH4 and pooled combination (rLdH2-4) stimulated the production of Th1 cytokines IFN-γ, IL-12 and TNF-α but not Th2 cytokines IL-4 or IL-10. The immunogenicity of these histone proteins along with their combination was also checked in cured hamsters where they stimulated higher lymphoproliferation and Nitric oxide production in lymphocytes of cured hamsters than that of infected controls. Moreover, significantly increased IgG2 response, an indicative of cell mediated immunity, was observed in cured hamsters against these individual proteins and their combination as compared to infected hamsters. Further, it was demonstrated that rLdH2B, rLdH3, rLdH2A and rLdH4 and pooled combination were able to provide considerable protection for hamsters against L. donovani challenge. The efficacy was supported by the increased inducible Nitric Oxide Synthase (iNOS) mRNA transcripts and Th1-type cytokines - IFN-γ, IL-12 and TNF-α and down-regulation of IL-4, IL-10 and TGF-β. Hence, it is inferred that pooled rLdH2-4 elicits Thl-type of immune responses exclusively and confer considerable protection against experimental Visceral Leishmaniasis.
- Published
- 2021
26. Transporter engineering for the development of cyanobacteria as cell factories: A text analytics guided survey
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Shinjinee Sengupta, Deepti Sahasrabuddhe, and Pramod P. Wangikar
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Cyanobacteria ,biology ,Chemistry ,Cell ,Membrane Transport Proteins ,Bioengineering ,Transporter ,Computational biology ,Carbon Dioxide ,biology.organism_classification ,Photosynthesis ,Applied Microbiology and Biotechnology ,Metabolic engineering ,Metabolic pathway ,medicine.anatomical_structure ,Metabolic Engineering ,medicine ,Function (biology) ,Biotechnology ,Pathway engineering - Abstract
Cyanobacteria are attractive candidates for photoautotrophic production of platform chemicals due to their inherent ability to utilize carbon dioxide as the sole carbon source. Metabolic pathways can be engineered more readily in cyanobacteria compared to higher photosynthetic organisms. Although significant progress has been made in pathway engineering, intracellular accumulation of the product is a potential bottleneck in large-scale production. Likewise, substrate uptake is known to limit growth and product formation. These limitations can potentially be addressed by targeted and controlled expression of transporter proteins in the metabolically engineered strains. This review focuses on the transporters that have been explored in cyanobacteria. To highlight the progress on characterization and application of cyanobacterial transporters, we applied text analytics to extract relevant information from over 1000 publications. We have categorized the transporters based on their source, their function and the solute they transport. Further, the review provides insights into the potential of transporters in the metabolic engineering of cyanobacteria for improved product titer.
- Published
- 2021
27. NGS-based profiling of key cancer genes in Indian triple-negative breast cancer patients reinforces molecular heterogeneity of the disease
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T.S. Sridhar, Madhura Kulkarni, JyothiS Prabhu, Aruna Korlimarla, NandiniA Sahasrabuddhe, Chaitanyananda Koppiker, Aditya Phatak, Santosh Dixit, Chetan Deshmukh, and Vinay Kusuma
- Subjects
Oncology ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Cancer gene ,Profiling (information science) ,Disease ,business ,Molecular heterogeneity ,Triple-negative breast cancer - Published
- 2021
28. Utilization of cervical cancer screening services and trends in screening positivity rates in a 'screen-and-treat' program integrated with HIV/AIDS care in Zambia.
- Author
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Mulindi H Mwanahamuntu, Vikrant V Sahasrabuddhe, Meridith Blevins, Sharon Kapambwe, Bryan E Shepherd, Carla Chibwesha, Krista S Pfaendler, Gracilia Mkumba, Belington Vwalika, Michael L Hicks, Sten H Vermund, Jeffrey Sa Stringer, and Groesbeck P Parham
- Subjects
Medicine ,Science - Abstract
In the absence of stand-alone infrastructures for delivering cervical cancer screening services, efforts are underway in sub-Saharan Africa to dovetail screening with ongoing vertical health initiatives like HIV/AIDS care programs. Yet, evidence demonstrating the utilization of cervical cancer prevention services in such integrated programs by women of the general population is lacking.We analyzed program operations data from the Cervical Cancer Prevention Program in Zambia (CCPPZ), the largest public sector programs of its kind in sub-Saharan Africa. We evaluated patterns of utilization of screening services by HIV serostatus, examined contemporaneous trends in screening outcomes, and used multivariable modeling to identify factors associated with screening test positivity.Between January 2006 and April 2011, CCPPZ services were utilized by 56,247 women who underwent cervical cancer screening with visual inspection with acetic acid (VIA), aided by digital cervicography. The proportion of women accessing these services who were HIV-seropositive declined from 54% to 23% between 2006-2010, which coincided with increasing proportions of HIV-seronegative women (from 22% to 38%) and women whose HIV serostatus was unknown (from 24% to 39%) (all p-for trend
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- 2013
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29. Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70.
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Zigui Chen, Mark Schiffman, Rolando Herrero, Rob DeSalle, Kathryn Anastos, Michel Segondy, Vikrant V Sahasrabuddhe, Patti E Gravitt, Ann W Hsing, and Robert D Burk
- Subjects
Medicine ,Science - Abstract
BACKGROUND:The species Alphapapillomavirus 7 (alpha-7) contains human papillomavirus genotypes that account for 15% of invasive cervical cancers and are disproportionately associated with adenocarcinoma of the cervix. Complete genome analyses enable identification and nomenclature of variant lineages and sublineages. METHODS:The URR/E6 region was sequenced to screen for novel variants of HPV18, 39, 45, 59, 68, 70, 85 and 97 from 1147 cervical samples obtained from multiple geographic regions that had previously been shown to contain an alpha-7 HPV isolate. To study viral heterogeneity, the complete 8 kb genome of 128 isolates, including 109 sequenced for this analysis, were annotated and analyzed. Viral evolution was characterized by constructing phylogenic trees using maximum-likelihood and Bayesian algorithms. Global and pairwise alignments were used to calculate total and ORF/region nucleotide differences; lineages and sublineages were assigned using an alphanumeric system. The prototype genome was assigned to the A lineage or A1 sublineage. RESULTS:The genomic diversity of alpha-7 HPV types ranged from 1.1% to 6.7% nucleotide sequence differences; the extent of genome-genome pairwise intratype heterogeneity was 1.1% for HPV39, 1.3% for HPV59, 1.5% for HPV45, 1.6% for HPV70, 2.1% for HPV18, and 6.7% for HPV68. ME180 (previously a subtype of HPV68) was designated as the representative genome for HPV68 sublineage C1. Each ORF/region differed in sequence diversity, from most variable to least variable: noncoding region 1 (NCR1) / noncoding region 2 (NCR2) > upstream regulatory region (URR) > E6 / E7 > E2 / L2 > E1 / L1. CONCLUSIONS:These data provide estimates of the maximum viral genomic heterogeneity of alpha-7 HPV type variants. The proposed taxonomic system facilitates the comparison of variants across epidemiological and molecular studies. Sequence diversity, geographic distribution and phylogenetic topology of this clinically important group of HPVs suggest an independent evolutionary history for each type.
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- 2013
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30. HPV genotype distribution in cervical intraepithelial neoplasia among HIV-infected women in Pune, India.
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Arati Mane, Amit Nirmalkar, Arun R Risbud, Sten H Vermund, Sanjay M Mehendale, and Vikrant V Sahasrabuddhe
- Subjects
Medicine ,Science - Abstract
The distribution of HPV genotypes, their association with rigorously confirmed cervical precancer endpoints, and factors associated with HPV infection have not been previously documented among HIV-infected women in India. We conducted an observational study to expand this evidence base in this population at high risk of cervical cancer.HIV-infected women (N = 278) in Pune, India underwent HPV genotyping by Linear Array assay. Cervical intraepithelial neoplasia (CIN) disease ascertainment was maximized by detailed assessment using cytology, colposcopy, and histopathology and a composite endpoint.CIN2+ was detected in 11.2% while CIN3 was present in 4.7% participants. HPV genotypes were present in 52.5% (146/278) and 'carcinogenic' HPV genotypes were present in 35.3% (98/278) HIV-infected women. 'Possibly carcinogenic' and 'non/unknown carcinogenic' HPV genotypes were present in 14.7% and 29.5% participants respectively. Multiple (≥ 2) HPV genotypes were present in half (50.7%) of women with HPV, while multiple 'carcinogenic' HPV genotypes were present in just over a quarter (27.8%) of women with 'carcinogenic' HPV. HPV16 was the commonest genotype, present in 12% overall, as well as in 47% and 50% in CIN2+ and CIN3 lesions with a single carcinogenic HPV infection, respectively. The carcinogenic HPV genotypes in declining order of prevalence overall included HPV 16, 56, 18, 39, 35, 51, 31, 59, 33, 58, 68, 45 and 52. Factors independently associated with 'carcinogenic' HPV type detection were reporting ≥ 2 lifetime sexual partners and having lower CD4+ count. HPV16 detection was associated with lower CD4+ cell counts and currently receiving combination antiretroviral therapy.HPV16 was the most common HPV genotype, although a wide diversity and high multiplicity of HPV genotypes was observed. Type-specific attribution of carcinogenic HPV genotypes in CIN3 lesions in HIV-infected women, and etiologic significance of concurrently present non/unknown carcinogenic HPV genotypes await larger studies.
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- 2012
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31. Infiltrating T-cell markers in cervical carcinogenesis: a systematic review and meta-analysis
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Tamara R. Litwin, Sarah R. Irvin, Nicolas Wentzensen, Rebecca Chornock, Vikrant V. Sahasrabuddhe, Margaret Stanley, Litwin, Tamara R [0000-0003-2130-6263], and Apollo - University of Cambridge Repository
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,Stromal cell ,Carcinogenesis ,T cell ,T-Lymphocytes ,Adaptive immunity ,Uterine Cervical Neoplasms ,Article ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Lymphocytes, Tumor-Infiltrating ,Cancer epidemiology ,Internal medicine ,medicine ,Humans ,IL-2 receptor ,Papillomaviridae ,030304 developmental biology ,0303 health sciences ,business.industry ,Papillomavirus Infections ,FOXP3 ,Acquired immune system ,medicine.disease ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cervical cancer ,Tumour immunology ,Female ,business ,Infiltration (medical) ,CD8 - Abstract
Funder: Intramural Research Program of the National Cancer Institute at the National Institutes of Health (Z01 CP010124-21)., BACKGROUND: The host adaptive immune response helps determine which cervical HPV infections persist and progress to precancer and cancer, and systematic characterisation of T-cell infiltration would help inform key steps in cervical carcinogenesis. METHODS: A systematic review and meta-analysis were conducted of infiltrating T-cells in normal cervix, low-grade lesions, high-grade lesions, and invasive cancers including epithelial, stromal, and total tissue and the following markers: CD3, CD4, CD8, FoxP3, CD25, and the CD4:CD8 ratio. An additional qualitative review summarised longitudinal data on associations between infiltrating T-cells and cervical disease persistence, regression, progression, or prognosis. RESULTS: There were fewer CD3+, CD4+, and CD8+ cells in cervical lesions and more cells in cancers compared to normal epithelium. FoxP3 and CD25+ regulatory T-cell infiltration is high in persistent and precancerous lesions, and longitudinal data show improved outcomes with lower regulatory T-cell levels. CONCLUSIONS: Successful immune evasion may reduce T-cell infiltration in HPV infected and precancerous epithelium, while invasive cancers are highly immunogenic, and regulatory T-cell infiltration increases with cervical disease progression. Understanding these factors may have prognostic value and could aid in novel treatment development and clinical guidelines, but published data are highly heterogeneous and leave important gaps to be filled by future studies.
- Published
- 2019
32. Noncommunicable diseases among HIV-infected persons in low-income and middle-income countries
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Charles E. Rose, Dianne M. Rausch, Bernardo Nuche-Berenguer, Vikrant V. Sahasrabuddhe, Pamela Y. Collins, Emmanuel Peprah, Susan Vorkoper, Pragna Patel, Naomi S. Levitt, and Sonak D. Pastakia
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Adult ,Male ,Immunology ,Human immunodeficiency virus (HIV) ,MEDLINE ,Uterine Cervical Neoplasms ,Developing country ,HIV Infections ,medicine.disease_cause ,Article ,03 medical and health sciences ,0302 clinical medicine ,Environmental health ,Hiv infected ,Diabetes Mellitus ,Prevalence ,medicine ,Humans ,Immunology and Allergy ,030212 general & internal medicine ,Developing Countries ,Africa South of the Sahara ,Aged ,Aged, 80 and over ,Depression ,business.industry ,Low income and middle income countries ,Middle Aged ,Infectious Diseases ,Current management ,Cardiovascular Diseases ,Noncommunicable disease ,030220 oncology & carcinogenesis ,Meta-analysis ,Female ,business - Abstract
OBJECTIVE: To appropriately identify and treat noncommunicable diseases (NCDs) among persons living with HIV (PLHIV) in low-and-middle-income countries (LMICs), it is imperative to understand the burden of NCDs among PLHIV in LMICs and the current management of the diseases. DESIGN: Systematic review and meta-analysis. METHODS: We examined peer-reviewed literature published between 1 January 2010 and 31 December 2016 to assess currently available evidence regarding HIV and four selected NCDs (cardiovascular disease, cervical cancer, depression, and diabetes) in LMICs with a focus on sub-Saharan Africa. The databases, PubMed/MEDLINE, Cochrane Review, and Scopus, were searched to identify relevant literature. For conditions with adequate data available, pooled estimates for prevalence were generated using random fixed effects models. RESULTS: Six thousand one hundred and forty-three abstracts were reviewed, 377 had potentially relevant prevalence data and 141 were included in the summary; 57 were selected for quantitative analysis. Pooled estimates for NCD prevalence were hyper-tension 21.2% (95% CI 16.3–27.1), hypercholesterolemia 22.2% (95% CI 14.7–32.1), elevated low-density lipoprotein 23.2% (95% CI 15.2–33.6), hypertriglyceridemia 27.2% (95% CI 20.7–34.8), low high-density lipoprotein 52.3% (95% CI 35.6–62.8), obesity 7.8% (95% CI 4.3–13.9), and depression 24.4% (95% CI 12.5–42.1). Invasive cervical cancer and diabetes prevalence were 1.3–1.7 and 1.3–18%, respectively. Few NCD-HIV integrated programs with screening and management approaches that are contextually appropriate for resource-limited settings exist. CONCLUSION: Improved data collection and surveillance of NCDs among PLHIV in LMICs are necessary to inform integrated HIV/NCD care models. Although efforts to integrate care exist, further research is needed to optimize the efficacy of these programs.
- Published
- 2018
33. Immunotherapeutic potential of Leishmania ( Leishmania ) donovani Th1 stimulatory proteins against experimental visceral leishmaniasis
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Amogh A. Sahasrabuddhe, Anuradha Dube, Sneha Ratnapriya, Sumit Joshi, Narendra Kumar Yadav, and Keerti
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0301 basic medicine ,030106 microbiology ,Enolase ,Protozoan Proteins ,Leishmania donovani ,Antigens, Protozoan ,Lymphocyte Activation ,law.invention ,03 medical and health sciences ,Immune system ,law ,Cricetinae ,medicine ,Animals ,Immunologic Factors ,Subclinical infection ,Immunity, Cellular ,Mesocricetus ,General Veterinary ,General Immunology and Microbiology ,biology ,business.industry ,Vaccination ,Aldolase A ,Public Health, Environmental and Occupational Health ,Th1 Cells ,biology.organism_classification ,medicine.disease ,Recombinant Proteins ,030104 developmental biology ,Infectious Diseases ,Visceral leishmaniasis ,Immunology ,Recombinant DNA ,biology.protein ,Leishmaniasis, Visceral ,Molecular Medicine ,Immunization ,business ,Triose-Phosphate Isomerase - Abstract
An effective therapeutic vaccination strategy is required for controlling visceral leishmaniasis (VL), a fatal systemic disease, through boosting the immunosuppressed state in Leishmania-infected individuals, as the majority of them living in the endemic regions exhibit either subclinical or asymptomatic infection which further often develops into a full-blown disease. Previously in our laboratory, several Th1 stimulatory recombinant proteins were successfully cloned, purified and assessed for their prophylactic efficacy against Leishmania challenge. Due to their immunostimulatory property, these proteins are needed to be evaluated for their immunotherapeutic potential in Leishmania-infected hamsters. Four proteins namely, aldolase, enolase, p45 and triose phosphate isomerase were taken up to immunize animals at different doses (50, 25 and 12.5 μg/animal). Immunization with lower doses of aldolase and enolase, i.e., 25 and 12.5 μg showed a significant decline (∼60%) in parasitic load along with an enhanced cellular immune response. These findings indicate that vaccination with above -stated Th1 stimulatory proteins is an effective immunotherapeutic approach against experimental VL. However, their efficacies may further be improved in combination with known therapeutic regimens or immunomodulators.
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- 2018
34. Ultrasound guided popliteal sciatic and femoral nerve block for below knee surgeries
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Saumil Sahasrabuddhe, Pramod Bhale, and Shilpa J Loya
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medicine.medical_specialty ,business.industry ,Medicine ,Building and Construction ,Electrical and Electronic Engineering ,business ,Femoral nerve block ,Ultrasound guided ,Surgery - Published
- 2018
35. Advancing cervical cancer prevention initiatives in resource-constrained settings: insights from the Cervical Cancer Prevention Program in Zambia.
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Mulindi H Mwanahamuntu, Vikrant V Sahasrabuddhe, Sharon Kapambwe, Krista S Pfaendler, Carla Chibwesha, Gracilia Mkumba, Victor Mudenda, Michael L Hicks, Sten H Vermund, Jeffrey S A Stringer, and Groesbeck P Parham
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Medicine - Abstract
Groesbeck Parham and colleagues describe their Cervical Cancer Prevention Program in Zambia, which has provided services to over 58,000 women over the past five years, and share lessons learned from the program's implementation and integration with existing HIV/AIDS programs.
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- 2011
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36. Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67.
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Zigui Chen, Mark Schiffman, Rolando Herrero, Rob Desalle, Kathryn Anastos, Michel Segondy, Vikrant V Sahasrabuddhe, Patti E Gravitt, Ann W Hsing, and Robert D Burk
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Medicine ,Science - Abstract
BACKGROUND:Human papillomavirus 16 (HPV16) species group (alpha-9) of the Alphapapillomavirus genus contains HPV16, HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67. These HPVs account for 75% of invasive cervical cancers worldwide. Viral variants of these HPVs differ in evolutionary history and pathogenicity. Moreover, a comprehensive nomenclature system for HPV variants is lacking, limiting comparisons between studies. METHODS:DNA from cervical samples previously characterized for HPV type were obtained from multiple geographic regions to screen for novel variants. The complete 8 kb genomes of 120 variants representing the major and minor lineages of the HPV16-related alpha-9 HPV types were sequenced to capture maximum viral heterogeneity. Viral evolution was characterized by constructing phylogenic trees based on complete genomes using multiple algorithms. Maximal and viral region specific divergence was calculated by global and pairwise alignments. Variant lineages were classified and named using an alphanumeric system; the prototype genome was assigned to the A lineage for all types. RESULTS:The range of genome-genome sequence heterogeneity varied from 0.6% for HPV35 to 2.2% for HPV52 and included 1.4% for HPV31, 1.1% for HPV33, 1.7% for HPV58 and 1.1% for HPV67. Nucleotide differences of approximately 1.0% - 10.0% and 0.5%-1.0% of the complete genomes were used to define variant lineages and sublineages, respectively. Each gene/region differs in sequence diversity, from most variable to least variable: noncoding region 1 (NCR1) /noncoding region 2 (NCR2) >upstream regulatory region (URR)> E6/E7 > E2/L2 > E1/L1. CONCLUSIONS:These data define maximum viral genomic heterogeneity of HPV16-related alpha-9 HPV variants. The proposed nomenclature system facilitates the comparison of variants across epidemiological studies. Sequence diversity and phylogenies of this clinically important group of HPVs provides the basis for further studies of discrete viral evolution, epidemiology, pathogenesis and preventative/therapeutic interventions.
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- 2011
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37. Prevalence and predictors of colposcopic-histopathologically confirmed cervical intraepithelial neoplasia in HIV-infected women in India.
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Vikrant V Sahasrabuddhe, Ramesh A Bhosale, Smita N Joshi, Anita N Kavatkar, Chandraprabha A Nagwanshi, Rohini S Kelkar, Cathy A Jenkins, Bryan E Shepherd, Seema Sahay, Arun R Risbud, Sten H Vermund, and Sanjay M Mehendale
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Medicine ,Science - Abstract
Prevalence estimates of cervical intraepithelial neoplasia (CIN) among HIV-infected women in India have been based on cervical cytology, which may have underestimated true disease burden. We sought to better establish prevalence estimates and evaluate risk factors of CIN among HIV-infected women in Pune, India using colposcopy and histopathology as diagnostic tools.Previously unscreened, non-pregnant HIV-infected women underwent cervical cancer screening evaluation including standardized diagnostic colposcopy by a gynecologist. Histopathologic confirmation was conducted among consenting women with clinical suspicion of CIN. The prevalence of CIN was evaluated by a composite diagnosis based on colposcopy and histopathology results. Multivariable ordinal logistic regression analysis was conducted to determine independent predictors of increasing severity of CIN.The median age of the n = 303 enrolled HIV-infected women was 30 years (interquartile range, 27-34). A majority of the participants were widowed or separated (187/303, 61.7%), more than one-third (114/302, 37.7%) were not educated beyond primary school, and nearly two-thirds (196/301, 64.7%) had a family per capita income of or =CIN1 lesions and a sixth [50/303: 16.5% (95% CI: 12.2-21.9)] had evidence of advanced (> or =CIN2) neoplastic disease. The independent predictors of increasing severity of CIN as revealed by a proportional odds model using multivariable ordinal logistic regression included (i) currently receiving antiretroviral therapy [adjusted odds ratios (aOR): 2.24 (1.17, 4.26), p = 0.01] and (ii) presence of cervical high-risk HPV-DNA [aOR: 1.93 (1.13, 3.28), p = 0.02].HIV-infected women in Pune, India have a substantial burden of cervical precancerous lesions, which may progress to invasive cervical cancer unless appropriately detected and treated. Increased attention should focus on recognizing and addressing this entirely preventable cancer among HIV-infected women, especially in the context of increasing longevity due to antiretroviral therapy.
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- 2010
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38. A Novel FBXO45-Gef-H1 Axis Controls Oncogenic Signaling in B-Cell Lymphoma
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Brian T. Gaudette, Junhyong Kim, Richa Kapoor, Rui Wu, Reiner Siebert, Julian Seufert, Louis M. Staudt, Philippe Szankasi, Kaiyu Ma, Xiao Zhang, Özlem Önder, Kevin P. Conlon, Cristina López, Anagh A. Sahasrabuddhe, Fuzon Chung, Xiaofei Chen, David Allman, Venkatesha Basrur, Joel R. Wilmore, Michael P. Cancro, Nathanael G. Bailey, Vinodh Pillai, Kojo S.J. Elenitoba-Johnson, Rishi Raj Chhipa, Robert Rottapel, Joon-Young Ahn, Megan S. Lim, Marilyn M. Li, Matthias Schlesner, Cory M. Hogaboam, and Michele Pagano
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Immunology ,Oncogenic signaling ,medicine ,Cancer research ,Cell Biology ,Hematology ,Biology ,B-cell lymphoma ,medicine.disease ,Biochemistry - Abstract
Introduction: Diffuse large B cell lymphoma (DLBCL) is the most common form of malignant lymphoma and may arise de novo, or through transformation from a pre-existing low-grade B cell lymphoma such as follicular lymphoma (FL). However, the post-translational mechanisms and deregulated pathways underlying the pathogenesis of disease evolution are not fully understood. Methods: We employed integrated functional and structural genomics and mass spectrometry (MS)-driven proteomics which implicated a possible novel tumor suppressor role for a conserved E3 ubiquitin ligase FBXO45 in DLBCL pathogenesis. We generated conditional knockout mice targeting loss of Fbxo45 in germinal center (GC) B-cells using the Cg1-Cre-loxP system and an assortment of CRISPR-mediated knockouts of FBXO45 in B cell lymphoma cells (FL518, BJAB, U2932). We engineered B cell lines (BJAB, U2932) to inducibly express FLAG-tagged FBXO45 to identify candidate substrates of FBXO45 using liquid chromatography-tandem MS. In vitro biochemical and in vivo studies using a variety of genetically-modified lines in xenograft studies in immunodeficient mice were performed to validate observations from proteogenomic studies. Whole genome sequencing (WGS) and genomic copy number studies were interrogated to investigate structural alterations targeting FBXO45 in primary human lymphoma samples. Results: Conditional targeting of Fbxo45 in GCB-cells in transgenic mice resulted in abnormal germinal center formation with increased number and size of germinal centers. Strikingly, targeted deletion of Fbxo45 in GCB-cells resulted in spontaneous B cell lymphomas with (22/22);100%) penetrance and none of the wild-type (WT) littermates (0/20; 0%) developed lymphoma at 24 months. Macroscopic examination revealed large tumor masses, splenomegaly, and lymphadenopathy at different anatomic locations including ileocecal junction, mesenteric, retroperitoneal and cervical lymph nodes and thymus. Next generation sequencing of immunoglobulin heavy chain genes revealed monoclonal or oligoclonal B cell populations. Using proteomic analysis of affinity-purified FBXO45-immunocomplexes and differential whole proteome analysis from GCB-cells of Fbxo45 wt/wt vs Fbxo45 fl/fl mice, we discovered that FBXO45 targets the RHO guanine exchange factor GEF-H1 for ubiquitin-mediated proteasomal degradation. FBXO45 exclusively interacts with GEF H1 among 8 F-box proteins investigated and silencing of FBXO45 using three independent shRNA and CRISPR-Cas9-mediated knockouts in B-cell lymphoma cell lines promotes RHOA and MAPK activation, B cell growth and enhances proliferation. GEF-H1 is stabilized by FBXO45 depletion and GEF-H1 ubiquitination by FBXO45 requires phosphorylation of GEF-H1. Importantly, FBXO45 depletion and expression of a GEF-H1 mutant that is unable to bind FBXO45 results in GEF-H1 stabilization, promotes hyperactivated RHO and MAPK signaling and B-cell oncogenicity in vitro and in vivo. Notably, this phenotype is reverted by co-silencing of GEF-H1. Inducible ectopic expression of FBXO45 triggers accelerated turnover of GEF H1 and decreased RHOA signaling. Genomic analyses revealed recurrent loss targeting FBXO45 in transformed DLBCL (25%), de novo DLBCL (6.6%) and FL (2.3%). In keeping with our observation of prolonged hyperactivation of pERK1/2 consequent to FBXO45 ablation, in vitro and in vivo studies using B-cell lymphoma cell lines and xenografts demonstrated increased sensitivity to pharmacologic blockade with the MAP2K1/2 (ERK1/2) inhibitor Trametinib. Conclusions: Our findings define a novel FBXO45-GEF-H1-MAPK signalling axis, which plays an important role in DLBCL pathogenesis. Our studies carry implications for potential exploitation of this pathway for targeted therapies. Disclosures Siebert: AstraZeneca: Speakers Bureau. Lim: EUSA Pharma: Honoraria.
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- 2021
39. Abstract 20: Development of International Cancer Research Partnerships Through the NCI US-Latin American-Caribbean HIV/HPV-Cancer Prevention Clinical Trials Network (ULACNet)
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Margaret G. House, Emma Brofsky, Brandy M. Heckman-Stoddard, Satish Gopal, Vikrant V. Sahasrabuddhe, and Mostafa Nokta
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medicine.medical_specialty ,Cancer prevention ,Latin Americans ,Epidemiology ,business.industry ,Public health ,Psychological intervention ,Cancer ,medicine.disease ,Triage ,Clinical trial ,Oncology ,Global health ,medicine ,Cancer research ,business - Abstract
Purpose: Persons living with HIV have elevated risks of HPV-related cervical, anogenital, and oropharyngeal cancers. Yet, research on optimization and implementation of prevention interventions (prophylactic HPV vaccination, cervical and anogenital cancer screening and triage, and precancer therapeutics) for HPV-related cancers among persons living with HIV has been limited. With a goal to expand this evidence, and building on strong academic research partnerships developed for HIV research between institutions in the US and the Latin American and the Caribbean (LAC) region, the US National Cancer Institute (NCI) initiated ULACNet, a new Cooperative Agreement clinical trials network in 2019. Methods: ULACNet comprises of three Partnership Centers each led by US-based institutions (University of California San Francisco, Weill Medical College of Cornell University, and Fred Hutchinson Cancer Research Center), working collaboratively with US and LAC institutions and with the NCI to develop and conduct multicenter prevention clinical trials focused on filling key scientific gaps and evaluating novel interventions. Results: ULACNet encompasses six countries (US, Mexico, Puerto Rico, Brazil, Peru, and Dominican Republic), twenty partner institutions, and over 100 collaborating scientific investigators, clinical and public health practitioners, research staff, and patient advocates. ULACNet will collaboratively conduct nine prevention clinical trials (two prophylactic HPV vaccine trials in adults and perinatally-HIV infected adolescents, three trials for clinical validation of molecular biomarkers and imaging technologies for screening and triage, two candidate HPV therapeutic vaccine trials, and two trials of topical therapeutic agents). Facilitation across network partners is achieved via a Coordinating Committee and three Working Groups (focused on HPV testing and screening, precancer treatment, and recruitment and retention activities). Conclusion: ULACNet seeks to leverage established academic global health partnerships to conduct high quality collaborative clinical trials to inform clinical practice and ultimately reduce the burden of highly preventable HPV-related cancers in persons living with HIV worldwide. Citation Format: Emma Brofsky, Margaret House, Brandy Heckman-Stoddard, Mostafa Nokta, Satish Gopal, Vikrant Sahasrabuddhe. Development of International Cancer Research Partnerships Through the NCI US-Latin American-Caribbean HIV/HPV-Cancer Prevention Clinical Trials Network (ULACNet) [abstract]. In: Proceedings of the 9th Annual Symposium on Global Cancer Research; Global Cancer Research and Control: Looking Back and Charting a Path Forward; 2021 Mar 10-11. Philadelphia (PA): AACR; Cancer Epidemiol Biomarkers Prev 2021;30(7 Suppl):Abstract nr 20.
- Published
- 2021
40. Abstract 110: Planned versus observed effect sizes in early phase chemoprevention trials
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Vikrant V. Sahasrabuddhe, Zhumin Zhang, Jen Birstler, Guanhua Chen, Jens C. Eickhoff, Eva Szabo, and KyungMann Kim
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Oncology ,Cancer Research ,medicine.medical_specialty ,education.field_of_study ,Cancer prevention ,business.industry ,Concordance ,Population ,Clinical trial ,Tolerability ,Sample size determination ,Internal medicine ,Clinical endpoint ,medicine ,Early phase ,education ,business - Abstract
Early phase chemoprevention trials are designed to demonstrate safety, tolerability, feasibility, and signals of efficacy. Yet it is often observed that most trials fail to detect intervention effects. The purpose of this review was to analyze intervention effects in such trials by comparing planned vs observed effect sizes. Single or multi-arm efficacy and biomarker chemoprevention trials conducted under the Phase 0-II Cancer Prevention Clinical Trial Program of the Division of Cancer Prevention, National Cancer Institute between 2003 and 2019 were evaluated. Protocols were reviewed to gather information regarding study design, primary endpoint(s), analysis plan, analysis population(s), and sample size justifications with planned effect sizes. Reports and manuscripts were reviewed to obtain study results information. Intervention effects for differences were quantified by calculating standardized Cohen's d effect sizes. In studies where only p-values were reported without effect sizes, observed effect sizes were estimated using p-values and sample size information. Planned effect sizes were compared to observed effect sizes and post-hoc power calculations were conducted. Of a total of 59 trials reviewed, twenty-four trials were efficacy or biomarker studies with complete information on planned and observed effect sizes. Organ sites of focus included 5 (21%) breast, 6 (25%) prostate, 4 (17%) lung, and 9 (38%) gastrointestinal and other sites. The majority of the trials (n=18) were multi-arm randomized studies of which 15 trials were blinded. The median planned effect size for detecting an intervention effect was 0.75 (range 0.2-1.14), while the median planned sample size per arm was n=30 (range 11-101). The planned effect sizes were larger than the observed effects sizes in the majority of the studies (88%). The observed effect sizes in most studies were small with a median of 0.34 (range 0-0.66). The median difference between planned vs observed effect size was -0.37. A low level of concordance between planned vs observed effect size was observed with an intra-class correlation coefficient 0.18 (95% CI: -0.1-0.50). The median post-hoc power for detecting the observed effect sizes was only 0.29 (range 0.03-0.93). There were no significant differences detected between planned vs observed effect sizes when stratified by accrual goals, analysis populations, or study design (multi-arm randomized vs single arm). The results indicate that the majority of early phase chemoprevention trials have much smaller observed effect sizes than planned. Sample size calculations for such trials need to balance the known attributes of the study endpoints, e.g. the potential detectable effect sizes in populations that can be realistically and cost-effectively accrued, with the need to detect only effect sizes large enough to justify subsequent phase III trials. Utilization of interim analyses for futility may be considered. Citation Format: Jens C. Eickhoff, Jen Birstler, Guanhua Chen, Zhumin Zhang, Vikrant Sahasrabuddhe, Eva Szabo, KyungMann Kim. Planned versus observed effect sizes in early phase chemoprevention trials [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 110.
- Published
- 2021
41. Laser ablation of the pia mater for insertion of high-density microelectrode arrays in a translational sheep model
- Author
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Aleksandar Tadić, Kevin M Boergens, Malgorzata Straka, Ingrid McNamara, Matthew S Hopper, Harbaljit S. Sohal, Kunal Sahasrabuddhe, Devin Fell, Matthew R Angle, and Yifan Kong
- Subjects
Cerebral Cortex ,Sheep ,Laser ablation ,Materials science ,Pia mater ,Biomedical Engineering ,Multielectrode array ,Laser ,Electrodes, Implanted ,law.invention ,Cellular and Molecular Neuroscience ,Microelectrode ,Electrophysiology ,medicine.anatomical_structure ,law ,Cortex (anatomy) ,medicine ,Animals ,Pia Mater ,Laser Therapy ,Neuron ,Microelectrodes ,Biomedical engineering - Abstract
Objective. The safe insertion of high density intracortical electrode arrays has been a long-standing practical challenge for neural interface engineering and applications such as brain-computer interfaces (BCIs). However, the pia mater can be difficult to penetrate and causes deformation of underlying cortical tissue during insertion of high-density intracortical arrays. This can lead to neuron damage or failed insertions. The development of a method to ease insertion through the pia mater would represent a significant step toward inserting high density intracortical arrays.Approach. Here we describe a surgical procedure, inspired by laser corneal ablation, that can be used in translational models to thin the pia mater.Main results. We demonstrate that controlled pia removal with laser ablation over a small area of cortex allows for microelectrode arrays to be inserted into the cortex with less force, thus reducing deformation of underlying tissue during placement of the microelectrodes. This procedure allows for insertion of high-density electrode arrays and subsequent acute recordings of spiking neuron activity in sheep cortex. We also show histological and electrophysiological evidence that laser removal of the pia does not acutely affect neuronal viability in the region.Significance. Laser ablation of the pia reduces insertion forces of high-density arrays with minimal to no acute damage to cortical neurons. This approach suggests a promising new path for clinical BCI with high-density microelectrode arrays.
- Published
- 2021
42. Leverage of an Existing Cervical Cancer Prevention Service Platform to Initiate Breast Cancer Control Services in Zambia: Experiences and Early Outcomes
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Ronda Henry-Tillman, Mulindi H. Mwanahamuntu, Leeya F. Pinder, Groesbeck P. Parham, Jean-Baptiste Nzayisenga, Aaron Shibemba, David Linyama, Kennedy Lishimpi, Victor Kusweje, Vikrant V. Sahasrabuddhe, and Michael L. Hicks
- Subjects
Adult ,Cancer Research ,medicine.medical_specialty ,Leverage (finance) ,MEDLINE ,Uterine Cervical Neoplasms ,Zambia ,Breast Neoplasms ,lcsh:RC254-282 ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Health care ,Original Reports ,medicine ,Humans ,030212 general & internal medicine ,skin and connective tissue diseases ,Curriculum ,Early Detection of Cancer ,Cervical cancer ,Gynecology ,business.industry ,Middle Aged ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,3. Good health ,Oncology ,030220 oncology & carcinogenesis ,Family medicine ,Cervical cancer prevention ,Health education ,Female ,business - Abstract
Purpose In 2005, the Cervical Cancer Prevention Program in Zambia (CCPPZ) was implemented and has since provided cervical cancer screen-and-treat services to more than 500,000 women. By leveraging the successes and experiences of the CCPPZ, we intended to build capacity for the early detection and surgical treatment of breast cancer. Methods Our initiative sought to build capacity for breast cancer care through the (1) formation of a breast cancer advocacy alliance to raise awareness, (2) creation of resource-appropriate breast cancer care training curricula for mid- and high-level providers, and (3) implementation of early detection and treatment capacity within two major health care facilities. Results Six months after the completion of the initiative, the following outcomes were documented: Breast health education and clinical breast examination (CBE) services were successfully integrated into the service platforms of four CCPPZ clinics. Two new breast diagnostic centers were opened, which provided access to breast ultrasound, ultrasound-guided core needle biopsy, and needle aspiration. Breast health education and CBE were provided to 1,955 clients, 167 of whom were evaluated at the two diagnostic centers; 55 of those evaluated underwent core-needle biopsy, of which 17 were diagnosed with invasive cancer. Newly trained surgeons performed six sentinel lymph node mappings, eight sentinel lymph node dissections, and 10 breast conservation surgeries (lumpectomies). Conclusion This initiative successfully established clinical services in Zambia that are critical for the early detection and surgical management of breast cancer.
- Published
- 2017
43. Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer
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T. S. Keshava Prasad, Aafaque Ahmad Khan, Sneha M. Pinto, Aneesha Radhakrishnan, Aditi Chatterjee, Arun H. Patil, Krishna Patel, Premendu P. Mathur, Joji Kurian Thomas, Harsha Gowda, Jayshree Advani, Xiaofei Chang, Nandini A. Sahasrabuddhe, Hitendra S. Solanki, Bipin G. Nair, David Sidransky, Ankit P. Jain, and Yashwanth Subbannayya
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0301 basic medicine ,Lung Neoplasms ,Microarray ,Biology ,Bioinformatics ,Biochemistry ,Cigarette Smoking ,03 medical and health sciences ,0302 clinical medicine ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,microRNA ,Phagosome maturation ,Genetics ,medicine ,Humans ,Lung cancer ,Molecular Biology ,Research Articles ,Regulation of gene expression ,medicine.disease ,MicroRNAs ,030104 developmental biology ,Gene Expression Regulation ,Cell culture ,030220 oncology & carcinogenesis ,Proteome ,Cancer research ,Molecular Medicine ,Biomarker (medicine) ,Biomarkers ,Biotechnology - Abstract
Chronic exposure to cigarette smoke markedly increases the risk for lung cancer. Regulation of gene expression at the post-transcriptional level by miRNAs influences a variety of cancer-related interactomes. Yet, relatively little is known on the effects of long-term cigarette smoke exposure on miRNA expression and gene regulation. NCI-H292 (H292) is a cell line sensitive to cigarette smoke with mucoepidermoid characteristics in culture. We report, in this study, original observations on long-term (12 months) cigarette smoke effects in the H292 cell line, using microarray-based miRNA expression profiling, and stable isotopic labeling with amino acids in cell culture-based quantitative proteomic analysis. We identified 112 upregulated and 147 downregulated miRNAs (by twofold) in cigarette smoke-treated H292 cells. The liquid chromatography-tandem mass spectrometry analysis identified 3,959 proteins, of which, 303 proteins were overexpressed and 112 proteins downregulated (by twofold). We observed 39 miRNA target pairs (proven targets) that were differentially expressed in response to chronic cigarette smoke exposure. Gene ontology analysis of the target proteins revealed enrichment of proteins in biological processes driving metabolism, cell communication, and nucleic acid metabolism. Pathway analysis revealed the enrichment of phagosome maturation, antigen presentation pathway, nuclear factor erythroid 2-related factor 2-mediated oxidative stress response, and cholesterol biosynthesis pathways in cigarette smoke-exposed cells. In conclusion, this report makes an important contribution to knowledge on molecular changes in a lung cell line in response to long term cigarette smoke exposure. The findings might inform future strategies for drug target, biomarker and diagnostics innovation in lung cancer, and clinical oncology. These observations also call for further research on the extent to which continuing or stopping cigarette smoking in patients diagnosed with lung cancer translates into molecular and clinical outcomes.
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- 2017
44. Rates and determinants of incidence and clearance of cervical HPV genotypes among HIV-seropositive women in Pune, India
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Sanjay Mehendale, Sten H. Vermund, Arun Risbud, Amit Nirmalkar, Seema Sahay, Arati Mane, Vikrant V. Sahasrabuddhe, and Ramesh Bhosale
- Subjects
Adult ,medicine.medical_specialty ,Genotype ,India ,HIV Infections ,Cervix Uteri ,Article ,03 medical and health sciences ,0302 clinical medicine ,Interquartile range ,Virology ,Internal medicine ,Statistical significance ,medicine ,Humans ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,Papillomaviridae ,business.industry ,Incidence ,Incidence (epidemiology) ,Papillomavirus Infections ,HPV infection ,virus diseases ,Odds ratio ,medicine.disease ,Infectious Diseases ,030220 oncology & carcinogenesis ,Immunology ,Female ,business ,Clearance rate - Abstract
Background Several studies in recent years have documented the genotype-specific prevalence of HPV infection and wide diversity and multiplicity of HPV genotypes among HIV-seropositive women. Yet, information on changes in HPV genotype-specific incidence and clearance rates over time, and their correlation with clinical or immunologic factors among HIV-seropositive women is scarce. Objectives We conducted a prospective study to investigate the incidence and clearance rates of cervical HPV genotypes among HIV-seropositive women in India and expand the evidence base in this area of research. Study design Cervical samples were collected from n = 215 HIV-seropositive women in Pune, India who underwent two screening visits separated by a median of 11-months (interquartile range: 8–18 months). HPV genotypes were determined by Roche Linear Array HPV assay. Individual genotype-specific and carcinogenicity-grouping-specific HPV incidence and clearance rates were calculated and the associations between incidence/clearance and age and HIV-related metrics were explored. Results Incidence and clearance rates for ‘any HPV’ and ‘carcinogenic HPV’ genotypes were 11.1 and 18.3, and 6.7 and 33.8, per 100 person-years, respectively. Incidence and clearance rates for HPV genotypes of alpha-9 species (HPV16, HPV31, HPV33, HPV35, HPV52 and HPV58) and alpha-7 species (HPV18, HPV39, HPV45, HPV59 and HPV68) were 5.8 and 2.04, and 32.1 and 53.5, per 100 person-years, respectively. Clearance of any HPV type was associated with increasing age of participants (odds ratio: 1.08, 95%CI: 1.004–1.17), although the association marginally lost its statistical significance when adjusted for CD4 counts and antiretroviral therapy status. Conclusions Genotype-specific clearance rates of HPV were higher than corresponding incidence rates. The suggestion of a positive associations of increasing age with HPV clearance points to the need for etiologic studies on age-related hormonal changes on clearance of cervical HPV infection.
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- 2017
45. Docosahexaenoic acid up-regulates both PI3K/AKT-dependent FABP7-PPARγ interaction and MKP3 that enhance GFAP in developing rat brain astrocytes
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Mohan Kamthan, Sabyasachi Sanyal, Harish Kumar, Juhi Mishra, Dhirendra Singh, Amogh A. Sahasrabuddhe, Manoj Kumar Gupta, Mohana Krishna Reddy Mudiam, Somali Sanyal, Sanghamitra Bandyopadhyay, Rajesh Kushwaha, and Sachin Tripathi
- Subjects
Male ,0301 basic medicine ,Docosahexaenoic Acids ,Peroxisome proliferator-activated receptor ,DUSP6 ,Biochemistry ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Dual Specificity Phosphatase 6 ,Glial Fibrillary Acidic Protein ,medicine ,Animals ,Rats, Wistar ,Protein kinase B ,Cells, Cultured ,PI3K/AKT/mTOR pathway ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,biology ,Glial fibrillary acidic protein ,Brain ,FABP7 ,Rats ,Up-Regulation ,Cell biology ,Oncogene Protein v-akt ,PPAR gamma ,030104 developmental biology ,medicine.anatomical_structure ,nervous system ,chemistry ,Docosahexaenoic acid ,Astrocytes ,biology.protein ,Female ,Fatty Acid-Binding Protein 7 ,030217 neurology & neurosurgery ,Protein Binding ,Astrocyte - Abstract
The astrocyte marker, glial fibrillary acidic protein (GFAP), has essential functions in the brain, but may trigger astroglial scarring when expressed in excess. Docosahexaenoic acid (DHA) is an n-3 fatty acid that is protective during brain development. However, the effect of DHA on GFAP levels of developing brain remains unexplored. Here, we detected that treating developing rats with DHA-enriched fish-oil caused dose-dependent GFAP augmentation. We investigated the mechanism promoting GFAP, hypothesizing the participation of fatty acid-binding protein-7 (FABP7), known to bind DHA. We identified that DHA stimulated FABP7 expression in astrocytes, and FABP7-silencing suppressed DHA-induced GFAP, indicating FABP7-mediated GFAP increase. Further investigation proved FABP7 expression to be phosphatidylinositide 3-kinases (PI3K)/AKT and nuclear receptor peroxisome proliferator-activated receptor-gamma (PPARγ)-dependent. We found that PI3K/AKT activated PPARγ that triggered FABP7 expression via PPARγ-responsive elements within its gene. Towards identifying FABP7-downstream pathways, we considered our previous report that demonstrated cyclin-dependent kinase-5 (CDK5)-PPARγ-protein-protein complex to suppress GFAP. We found that the DHA-induced FABP7 underwent protein-protein interaction with PPARγ, which impeded CDK5-PPARγ formation. Hence, it appeared that enhanced FABP7-PPARγ in lieu of CDK5-PPARγ resulted in increased GFAP. PI3K/AKT not only stimulated formation of FABP7-PPARγ protein-protein complex, but also up-regulated a FABP7-independent MAP-kinase-phosphatase-3 pathway that inactivated CDK5 and hence attenuated CDK5-PPARγ. Overall, our data reveal that via the proximal PI3K/AKT, DHA induces FABP7-PPARγ, through genomic and non-genomic mechanisms, and MAP-kinase-phosphatase-3 that converged at attenuated CDK5-PPARγ and therefore, enhanced GFAP. Accordingly, our study demonstrates a DHA-mediated astroglial hyperactivation, pointing toward a probable injurious role of DHA in brain development.
- Published
- 2016
46. Parasitic load determination by differential expressions of 5-lipoxygenase and PGE2 synthases in visceral leishmaniasis
- Author
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Satya Prakash, Ambak Kumar Rai, Bharat Singh, Amogh A. Sahasrabuddhe, Sheetal Saini, Smita Kumari, Anuradha Dube, and Amit Kumar Kureel
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0301 basic medicine ,Physiology ,Leishmania donovani ,Hamster ,Spleen ,030204 cardiovascular system & hematology ,Biochemistry ,Dinoprostone ,Parasite Load ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Cricetinae ,medicine ,Animals ,Humans ,Immunologic Factors ,Prostaglandin-E Synthases ,Pharmacology ,Arachidonate 5-Lipoxygenase ,biology ,Macrophages ,Cell Biology ,biology.organism_classification ,medicine.disease ,Leishmania ,Interleukin-10 ,030104 developmental biology ,medicine.anatomical_structure ,Visceral leishmaniasis ,Liver ,Immunology ,Arachidonate 5-lipoxygenase ,biology.protein ,Eicosanoids ,Leishmaniasis, Visceral ,lipids (amino acids, peptides, and proteins) ,Female ,Mesocricetus - Abstract
Infection with L. donovani affects mainly visceral organs. Importantly, the parasitic load differs in different visceral organs; therefore there is a need to understand the organ specific immune regulation, particularly in the spleen and liver. Comparative studies between these organs in Leishmania infected hamster (Mesocricetus auratus) are lacking. Our study highlights the importance of eicosanoids in the organ specific pathology of visceral leishmaniasis. Among other immune cells, macrophages (mφ) which harbor Leishmania parasite are major producers of eicosanoids. In this study, we intend to explore linkage between organ specific immune response and eicosanoids. We suggest that eicosanoids (early immune modulators) and their organ specific expressions, possibly tune the outcome of mφ differently at different sites. We have observed that liver showed better containment of parasitic load than spleen, where we have found higher expression of 5-lipoxygenase (5-LO) enzyme along with IL-12 and iNOS. However, in spleen, enzymes of the PGE2 pathway i.e. PGE2 synthases (cytosolic and microsomal) along with IL-10 were predominantly higher. To further corroborate our findings, in vitro assays were carried out using purified eicosanoids (LTB4 and PGE2) and the inhibitors of these pathways. Findings establish that the 5-lipoxygenase pathway (i.e. LTB4) is anti-parasitic and its inhibition increases the parasitic load (qPCR based kDNA detection). On the contrary, PGES pathway (i.e. PGE2) supports establishment of infection in mφ. Taken together, 5-LO pathway plays a protective role in liver during L. donovani infection. However, the PGES pathway favors the parasite growth, particularly in the spleen at a later stage.
- Published
- 2019
47. Quantitative secretome analysis unravels new secreted proteins in Amphotericin B resistant Leishmania donovani
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Parool Gupta, Ashish Ganguly, Amogh A. Sahasrabuddhe, Kuljit Singh, Gaurav Garg, Pradeep Das, and Vahab Ali
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0301 basic medicine ,Proteomics ,Proteolysis ,Biophysics ,Leishmania donovani ,Antiprotozoal Agents ,Drug Resistance ,Protozoan Proteins ,Drug resistance ,Biology ,Biochemistry ,Microbiology ,03 medical and health sciences ,Western blot ,Amphotericin B ,medicine ,Humans ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,medicine.diagnostic_test ,Leishmaniasis ,medicine.disease ,biology.organism_classification ,030104 developmental biology ,Enzyme ,Secretory protein ,chemistry - Abstract
Leishmaniasis is second most neglected disease after malaria and seems to be a worldwide concern because of increased drug resistance and non-availability of approved vaccine. The underlying molecular mechanism of drug resistance (Amp B) in Leishmania parasites still remains elusive. Herein, the present study investigated differentially expressed secreted proteins of Amphotericin B sensitive (S) and resistant (R) isolate of Leishmania donovani by using label free quantitative LC-MS/MS approach. A total of 406 differentially expressed secreted proteins were found between sensitive (S) and resistant (R) isolate. Among 406 proteins, 32 were significantly up regulated (>2.0 fold) while 22 were down regulated (
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- 2019
48. Retinal Fundus Multi-Disease Image Dataset (RFMiD): A Dataset for Multi-Disease Detection Research
- Author
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Gwenole Quellec, Fabrice Meriaudeau, Vivek Sahasrabuddhe, Girish Deshmukh, Luca Giancardo, Manesh Kokare, Dhanshree Thulkar, Prasanna Porwal, and Samiksha Pachade
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Information Systems and Management ,genetic structures ,Visual impairment ,Glaucoma ,Disease ,Fundus (eye) ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,rare pathology detection ,medicine ,Vision rehabilitation ,multi-label classification ,retinal fundus images ,business.industry ,ocular disease ,Diabetic retinopathy ,Macular degeneration ,medicine.disease ,lcsh:Z ,eye diseases ,lcsh:Bibliography. Library science. Information resources ,Computer Science Applications ,classification ,030221 ophthalmology & optometry ,Optometry ,Central retinal artery occlusion ,sense organs ,medicine.symptom ,business ,Information Systems - Abstract
The world faces difficulties in terms of eye care, including treatment, quality of prevention, vision rehabilitation services, and scarcity of trained eye care experts. Early detection and diagnosis of ocular pathologies would enable forestall of visual impairment. One challenge that limits the adoption of computer-aided diagnosis tool by ophthalmologists is the number of sight-threatening rare pathologies, such as central retinal artery occlusion or anterior ischemic optic neuropathy, and others are usually ignored. In the past two decades, many publicly available datasets of color fundus images have been collected with a primary focus on diabetic retinopathy, glaucoma, age-related macular degeneration and few other frequent pathologies. To enable development of methods for automatic ocular disease classification of frequent diseases along with the rare pathologies, we have created a new Retinal Fundus Multi-disease Image Dataset (RFMiD). It consists of 3200 fundus images captured using three different fundus cameras with 46 conditions annotated through adjudicated consensus of two senior retinal experts. To the best of our knowledge, our dataset, RFMiD, is the only publicly available dataset that constitutes such a wide variety of diseases that appear in routine clinical settings. This dataset will enable the development of generalizable models for retinal screening.
- Published
- 2021
49. Body Mass Index, Waist Circumference, Diabetes, and Risk of Liver Cancer for U.S. Adults
- Author
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Julie E. Buring, Mark P. Purdue, Christina C. Newton, Jean Wactawski-Wende, Julie R. Palmer, Anne Zeleniuch-Jacquotte, Dawn Q. Chong, Michael C. R. Alavanja, Albert R. Hollenbeck, Lindsey King, Victoria L. Stevens, Mia M. Gaudet, Jill Koshiol, Howard D. Sesso, Lynn Rosenberg, Neal D. Freedman, Mridul Datta, Kim Robien, Barry I. Graubard, Andrew T. Chan, Vikrant V. Sahasrabuddhe, J. Michael Gaziano, Laura E. Beane Freeman, Andrew G Renehan, Jessica L. Petrick, Martha S. Linet, Katherine A. McGlynn, Edward Giovannucci, Catherine Schairer, Alice J. Sigurdson, I-Min Lee, Peter T. Campbell, and Jenny N. Poynter
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Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Waist ,Article ,Body Mass Index ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,Prospective Studies ,Prospective cohort study ,Aged ,Proportional Hazards Models ,Hepatitis ,business.industry ,Liver Neoplasms ,nutritional and metabolic diseases ,Cancer ,Middle Aged ,medicine.disease ,Obesity ,Endocrinology ,Diabetes Mellitus, Type 2 ,Oncology ,030220 oncology & carcinogenesis ,Female ,030211 gastroenterology & hepatology ,Waist Circumference ,Liver cancer ,business ,Body mass index - Abstract
Incidence rates for liver cancer have increased 3-fold since the mid-1970s in the United States in parallel with increasing trends for obesity and type II diabetes mellitus. We conducted an analysis of baseline body mass index (BMI), waist circumference (WC), and type II diabetes mellitus with risk of liver cancer. The Liver Cancer Pooling Project maintains harmonized data from 1.57 million adults enrolled in 14 U.S.-based prospective studies. Cox regression estimated HRs and 95% confidence intervals (CI) adjusted for age, sex, study center, alcohol, smoking, race, and BMI (for WC and type II diabetes mellitus). Stratified analyses assessed whether the BMI–liver cancer associations differed by hepatitis sera-positivity in nested analyses for a subset of cases (n = 220) and controls (n = 547). After enrollment, 2,162 incident liver cancer diagnoses were identified. BMI, per 5 kg/m2, was associated with higher risks of liver cancer, more so for men (HR = 1.38; 95% CI, 1.30–1.46) than women (HR = 1.25; 95% CI, 1.17–1.35; Pinteraction = 0.02). WC, per 5 cm, was associated with higher risks of liver cancer, approximately equally by sex (overall, HR = 1.08; 95% CI, 1.04–1.13). Type II diabetes mellitus was associated with higher risk of liver cancer (HR = 2.61; 95% CI, 2.34–2.91). In stratified analyses, there was a null association between BMI and liver cancer risk for participants who were sera-positive for hepatitis. This study suggests that high BMI, high WC, and type II diabetes mellitus are associated with higher risks of liver cancer and that the association may differ by status of viral hepatitis infection. Cancer Res; 76(20); 6076–83. ©2016 AACR.
- Published
- 2016
50. Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells
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Keshava K. Datta, Hitendra S. Solanki, Aditi Chatterjee, Vishalakshi Nanjappa, Nazia Syed, Vinuth N Puttamallesh, Harsha Gowda, Sai A. Balaji, Arun H. Patil, Nandini A. Sahasrabuddhe, David Sidransky, Remya Raja, T. S. Keshava Prasad, Santosh Renuse, Evgeny Izumchenko, Niraj Babu, Xiaofei Chang, Akhilesh Pandey, Annapoorni Rangarajan, and Aneesha Radhakrishnan
- Subjects
Male ,rac1 GTP-Binding Protein ,0301 basic medicine ,Oncology ,Gerontology ,Lung Neoplasms ,Proteome ,medicine.medical_treatment ,Mice, SCID ,NSCLC ,Metastasis ,Targeted therapy ,Mice ,Mice, Inbred NOD ,Carcinoma, Non-Small-Cell Lung ,Smoke ,Epidemiology ,Phosphorylation ,RNA, Small Interfering ,mass spectrometry ,Kinase ,Tobacco Products ,3. Good health ,ErbB Receptors ,Signal Transduction ,Research Paper ,p21 (RAC1)-activated kinase 6 ,medicine.medical_specialty ,Genetic Medicine ,Cell Survival ,smoking ,03 medical and health sciences ,Cell Line, Tumor ,Internal medicine ,medicine ,Animals ,Humans ,Pyrroles ,Gene Silencing ,Lung cancer ,Cell Proliferation ,business.industry ,Cancer ,medicine.disease ,Molecular medicine ,030104 developmental biology ,p21-Activated Kinases ,Pyrazoles ,business ,Neoplasm Transplantation - Abstract
// Remya Raja 1, * , Nandini A. Sahasrabuddhe 1, * , Aneesha Radhakrishnan 1, 2, * , Nazia Syed 1, 2 , Hitendra S. Solanki 1, 3 , Vinuth N. Puttamallesh 1, 4 , Sai A. Balaji 5 , Vishalakshi Nanjappa 1, 4 , Keshava K. Datta 1, 3 , Niraj Babu 1 , Santosh Renuse 1, 4 , Arun H. Patil 1, 3 , Evgeny Izumchenko 6 , T.S. Keshava Prasad 1, 4, 11, 12 , Xiaofei Chang 6 , Annapoorni Rangarajan 5 , David Sidransky 6 , Akhilesh Pandey 7, 8, 9, 10 , Harsha Gowda 1, 11 , Aditi Chatterjee 1, 11 1 Institute of Bioinformatics, International Tech Park, Bangalore, 560 066, India 2 Department of Biochemistry and Molecular Biology, Pondicherry University, Puducherry, 605014, India 3 School of Biotechnology, KIIT University, Bhubaneswar, Odisha, 751024, India 4 Amrita School of Biotechnology, Amrita University, Kollam, 690 525, India 5 Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, 560012, India 6 Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21231, USA 7 McKusick-Nathans Institute of Genetic Medicine, Baltimore, Maryland, 21205, USA 8 Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21205, USA 9 Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21205, USA 10 Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21205, USA 11 YU-IOB Center for Systems Biology and Molecular Medicine, Yenepoya University, Mangalore, 575018, India 12 NIMHANS-IOB Proteomics and Bioinformatics Laboratory, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore, 560029, India * These authors contributed equally to this work Correspondence to: Aditi Chatterjee, email: aditi@ibioinformatics.org Keywords: mass spectrometry, NSCLC, p21 (RAC1)-activated kinase 6, smoking Received: January 27, 2016 Accepted: August 08, 2016 Published: August 16, 2016 ABSTRACT Epidemiological data clearly establishes cigarette smoking as one of the major cause for lung cancer worldwide. Recently, targeted therapy has become one of the most preferred modes of treatment for cancer. Though certain targeted therapies such as anti-EGFR are in clinical practice, they have shown limited success in lung cancer patients who are smokers. This demands discovery of alternative drug targets through systematic investigation of cigarette smoke-induced signaling mechanisms. To study the signaling events activated in response to cigarette smoke, we carried out SILAC-based phosphoproteomic analysis of H358 lung cancer cells chronically exposed to cigarette smoke. We identified 1,812 phosphosites, of which 278 phosphosites were hyperphosphorylated (≥ 3-fold) in H358 cells chronically exposed to cigarette smoke. Our data revealed hyperphosphorylation of S560 within the conserved kinase domain of PAK6. Activation of PAK6 is associated with various processes in cancer including metastasis. Mechanistic studies revealed that inhibition of PAK6 led to reduction in cell proliferation, migration and invasion of the cigarette smoke treated cells. Further, siRNA mediated silencing of PAK6 resulted in decreased invasive abilities in a panel of non-small cell lung cancer (NSCLC) cells. Consistently, mice bearing tumor xenograft showed reduced tumor growth upon treatment with PF-3758309 (group II PAK inhibitor). Immunohistochemical analysis revealed overexpression of PAK6 in 66.6% (52/78) of NSCLC cases in tissue microarrays. Taken together, our study indicates that PAK6 is a promising novel therapeutic target for NSCLC, especially in smokers.
- Published
- 2016
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