48 results on '"Nobuhisa Watanabe"'
Search Results
2. TdIF1 recognizes a specific DNA sequence through its Helix-Turn-Helix and AT-hook motifs to regulate gene transcription.
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Takashi Kubota, Osamu Koiwai, Katsutoshi Hori, Nobuhisa Watanabe, and Kotaro Koiwai
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Medicine ,Science - Abstract
TdIF1 was originally identified as a protein that directly binds to DNA polymerase TdT. TdIF1 is also thought to function in transcription regulation, because it binds directly to the transcriptional factor TReP-132, and to histone deacetylases HDAC1 and HDAC2. Here we show that TdIF1 recognizes a specific DNA sequence and regulates gene transcription. By constructing TdIF1 mutants, we identify amino acid residues essential for its interaction with DNA. An in vitro DNA selection assay, SELEX, reveals that TdIF1 preferentially binds to the sequence 5'-GNTGCATG-3' following an AT-tract, through its Helix-Turn-Helix and AT-hook motifs. We show that four repeats of this recognition sequence allow TdIF1 to regulate gene transcription in a plasmid-based luciferase reporter assay. We demonstrate that TdIF1 associates with the RAB20 promoter, and RAB20 gene transcription is reduced in TdIF1-knocked-down cells, suggesting that TdIF1 stimulates RAB20 gene transcription.
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- 2013
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3. Usefulness of cardiac fusion imaging with computed tomography and Doppler echocardiography in the assessment of conduit stenosis in complex adult congenital heart disease
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Kazuhiro Osawa, Fumi Yokohama, Yoichi Takaya, Norihisa Toh, Rie Nakayama, Nobuhisa Watanabe, Hiroshi Ito, Teiji Akagi, Toru Miyoshi, and Susumu Kanazawa
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Adult ,Heart Defects, Congenital ,Cardiac Catheterization ,medicine.medical_specialty ,Heart disease ,medicine.medical_treatment ,Computed tomography ,Constriction, Pathologic ,Doppler echocardiography ,Internal medicine ,Multidetector Computed Tomography ,medicine ,Humans ,In patient ,Cardiac catheterization ,medicine.diagnostic_test ,business.industry ,Aortic Valve Stenosis ,medicine.disease ,Echocardiography, Doppler ,Stenosis ,Echocardiography ,Peak velocity ,cardiovascular system ,Cardiology ,Tomography ,Cardiology and Cardiovascular Medicine ,business - Abstract
Noninvasive assessment of stenotic lesions in patients with complex adult congenital heart disease (ACHD) is challenging due to its complex morphology. The simultaneous two-screen display of multidetector-computed tomography (MDCT) and real-time echogram (STDME) technology can display a virtual multi-planar reconstruction from MDCT corresponding to the same cross-sectional image from transthoracic echocardiography (TTE). We investigated the usefulness of the STDME technology for stenosis severity assessment in complex ACHD patients.Twenty-four complex ACHD patients with stenotic lesions were enrolled in this study. All patients underwent TTE and the STDME technology within a week after MDCT. Peak velocity and pressure gradient (PG) across the stenotic site were measured using continuous wave Doppler. Cardiac catheterization was performed in 17 patients.Nine out of the twenty-four patients had undergone repair with a conduit. Peak velocity and PG from the STDME technology were higher than those from TTE (peak velocity: 3.1 ± 1.1 vs. 2.8 ± 1.0 m/s; peak PG: 43 ± 28 vs. 34 ± 21 mmHg; both p0.01). Peak PG from the STDME technology showed significant correlations with those from catheterization in patients with a conduit (n=7) and those without a conduit (n=10) (r = 0.795 and 0.880, respectively; both p0.05), while peak PG from TTE was correlated with catheterization measurements only in patients without a conduit (r = 0.850, p0.05).The STDME technology enables more accurate assessment of conduit stenosis severity than does TTE in complex ACHD patients.
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- 2021
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4. Multiple Late Complications After Takeuchi Repair of Anomalous Left Coronary Artery From the Pulmonary Artery
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Yoichi Takaya, Shingo Kasahara, Norihisa Toh, Nobuhisa Watanabe, Teiji Akagi, Hiroshi Ito, Fumi Yokohama, and Yasuhiro Kotani
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0301 basic medicine ,anomalous left coronary artery from pulmonary artery ,medicine.medical_specialty ,Mini-Focus Issue: Congenital Heart Disease ,MPA, main pulmonary artery ,Computed tomography ,030105 genetics & heredity ,ALCAPA, anomalous left coronary artery from the pulmonary artery ,03 medical and health sciences ,0302 clinical medicine ,Left coronary artery ,LCA, left coronary artery ,medicine.artery ,adult congenital heart disease ,Diseases of the circulatory (Cardiovascular) system ,Medicine ,LV, left ventricular ,Surgical approach ,medicine.diagnostic_test ,business.industry ,STDME, simultaneous 2-screen display of multidetector computed tomography and real-time echogram ,Takeuchi repair ,MDCT, multidetector computed tomography ,RC666-701 ,ACHD, adult congenital heart disease ,Pulmonary artery ,Case Report: Clinical Case ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,030217 neurology & neurosurgery - Abstract
Takeuchi repair is a unique surgical approach in anomalous left coronary artery from the pulmonary artery. We present an adult patient with anomalous left coronary artery from the pulmonary artery with multiple late structural complications after Takeuchi repair who was evaluated using multimodality imaging, including newly developed cardiac fusion imaging with computed tomography and echocardiography. (Level of Difficulty: Advanced.), Central Illustration
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- 2021
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5. Efficacy and safety of atrial septal defect closure using Occlutech Figulla Flex II compared with Amplatzer Septal Occluder
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Koji Nakagawa, Yoichi Takaya, Takashi Miki, Teiji Akagi, Rie Nakayama, Hiroshi Ito, Norihisa Toh, and Nobuhisa Watanabe
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Male ,Cardiac Catheterization ,medicine.medical_specialty ,Septal Occluder Device ,030204 cardiovascular system & hematology ,Heart Septal Defects, Atrial ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,In patient ,030212 general & internal medicine ,Retrospective Studies ,business.industry ,Amplatzer Septal Occluder ,Atrial septal defect closure ,Middle Aged ,Vascular surgery ,Surgery ,Cardiac surgery ,Treatment Outcome ,Device Embolization ,Aortic Rim ,Female ,Cardiology and Cardiovascular Medicine ,business ,Echocardiography, Transesophageal ,Shunt (electrical) ,Follow-Up Studies - Abstract
Few studies have reported the efficacy of Occlutech Figulla Flex II (FFII) device compared with Amplatzer Septal Occluder (ASO) device. The aim of this study was to examine the efficacy and safety of FFII compared with ASO for transcatheter atrial septal defect (ASD) closure. We retrospectively evaluated 190 patients using FFII and 190 patients using ASO who underwent transcatheter ASD closure. ASD characteristics were evaluated by transesophageal echocardiography. The prevalence of procedural complications, including erosion, device embolization, stroke, and new-onset atrial arrhythmia, and the presence of a residual shunt were evaluated between the two groups during 12-month follow-up. FFII was used more frequently than ASO in patients with a deficient aortic rim or septal malalignment (P = 0.02, P
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- 2021
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6. Importance of Abdominal Compression Valsalva Maneuver and Microbubble Grading in Contrast Transthoracic Echocardiography for Detecting Patent Foramen Ovale
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Hiroshi Ito, Norihisa Toh, Nobuhisa Watanabe, Madoka Ikeda, Teiji Akagi, Koji Nakagawa, Rie Nakayama, and Yoichi Takaya
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Adult ,Male ,medicine.medical_specialty ,Optimal cutoff ,Valsalva Maneuver ,medicine.medical_treatment ,Contrast Media ,Foramen Ovale, Patent ,030204 cardiovascular system & hematology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Abdomen ,Valsalva maneuver ,Humans ,Medicine ,Cutoff ,Radiology, Nuclear Medicine and imaging ,Retrospective Studies ,business.industry ,Abdominal compression ,medicine.disease ,body regions ,Cryptogenic stroke ,Echocardiography ,Microbubbles ,Cardiology ,Patent foramen ovale ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Background Although transthoracic echocardiography (TTE) may be useful for patent foramen ovale (PFO) screening, the optimal methodologies remain unclear. The aims of this study were to evaluate the efficacy of the abdominal compression Valsalva maneuver and identify the optimal cutoff value of microbubbles in contrast TTE for detecting PFO, compared with transesophageal echocardiography and catheterization as the reference. Methods One hundred thirty-four patients with cryptogenic stroke or migraine who had suspected PFO and underwent TTE and transesophageal echocardiography plus catheterization were enrolled. The sensitivity, specificity, and accuracy of TTE for PFO detection were analyzed according to different provocations (spontaneous Valsalva maneuver, abdominal compression Valsalva maneuver) and different cutoff values of microbubbles for a positive result (at least one microbubble, at least five microbubbles). Results Eighty patients had PFO confirmed by transesophageal echocardiography and catheterization. When the cutoff was at least one microbubble, the sensitivity of TTE in detecting PFO was 93% with the spontaneous Valsalva maneuver and 99% with the abdominal compression Valsalva maneuver. When the cutoff was at least five microbubbles, sensitivity was 85% with the spontaneous Valsalva maneuver and 99% with the abdominal compression Valsalva maneuver. With the abdominal compression Valsalva maneuver, specificity was increased using the cutoff of at least five microbubbles compared with at least one microbubble (89% vs 57%). The abdominal compression Valsalva maneuver with the cutoff of at least 5 microbubbles provided the greatest accuracy of 95%. Conclusions TTE with the abdominal compression Valsalva maneuver had excellent sensitivity. The cutoff of at least five microbubbles increased specificity. Our findings suggest that TTE with these criteria is valuable for PFO diagnosis.
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- 2020
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7. Identification of High-Risk Patent Foramen Ovale Associated With Cryptogenic Stroke: Development of a Scoring System
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Rie Nakayama, Teiji Akagi, Yoichi Takaya, Norihisa Toh, Nobuhisa Watanabe, Madoka Ikeda, Koji Nakagawa, and Hiroshi Ito
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Adult ,Male ,Cardiac Catheterization ,medicine.medical_specialty ,Scoring system ,medicine.medical_treatment ,Foramen Ovale, Patent ,030204 cardiovascular system & hematology ,Risk Assessment ,Inferior vena cava ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Valsalva maneuver ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Retrospective Studies ,Framingham Risk Score ,business.industry ,Middle Aged ,medicine.disease ,Stroke ,Cryptogenic stroke ,medicine.anatomical_structure ,medicine.vein ,Patent foramen ovale ,Cardiology ,Female ,Cardiology and Cardiovascular Medicine ,business ,Echocardiography, Transesophageal ,Shunt (electrical) ,Interatrial septum - Abstract
Background Transcatheter closure of patent foramen ovale (PFO) has become an effective therapeutic strategy for cryptogenic stroke (CS). The identification of high-risk PFO is essential, but the data are limited. This study aimed to clarify the factors related to CS and to develop a score for high-risk PFO. Methods We retrospectively analyzed 57 patients with prior CS and 50 without CS who were scheduled for transcatheter closure. PFO characteristics were evaluated by transesophageal echocardiography. Based on factors related to CS, we estimated the risk score. Results Patients with CS had a greater frequency of large-size PFO (≥2 mm in height), long-tunnel PFO (≥10 mm in length), atrial septal aneurysm, hypermobile interatrial septum, prominent Eustachian valve or Chiari's network, the large right-to-left shunt at rest and during Valsalva maneuver, and low-angle PFO (≤10° of PFO angle from inferior vena cava), compared with patients without CS. Multivariate analysis showed that long-tunnel PFO, the presence of hypermobile interatrial septum, the presence of prominent Eustachian valve or Chiari's network, the large right-to-left shunt during Valsalva maneuver, and low-angle PFO were independently related to CS. When the score was estimated based on 1 point for each factor, the proportion of CS was markedly elevated with a score of ≥2 points. The probability of CS was markedly different between scores of ≤1 or ≥2 points. Conclusions PFO risk can be assessed with a score based on high-risk features. The presence of two or more high-risk PFO features is associated with CS.
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- 2019
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8. Fusion imaging of three‐dimensional echocardiographic speckle‐tracking with cardiac computed tomography for identification of myocardial ischemia
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Hiroshi Ito, Toru Miyoshi, Norihisa Toh, Nobuhisa Watanabe, Yoichi Takaya, and Rie Nakayama
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medicine.medical_specialty ,Image fusion ,Myocardial ischemia ,Cardiac computed tomography ,business.industry ,General Medicine ,Tracking (particle physics) ,Identification (information) ,Speckle pattern ,Text mining ,Clinical Image ,Medicine ,Radiology ,business - Published
- 2021
9. Efficacy of Saline Contrast Transthoracic Echocardiography for Identifying High-Risk Patent Foramen Ovale
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Madoka Haruna, Hiroshi Ito, Teiji Akagi, Rie Nakayama, Kazuki Suruga, Yoichi Takaya, Koji Nakagawa, Norihisa Toh, and Nobuhisa Watanabe
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,media_common.quotation_subject ,Contrast Media ,Foramen Ovale, Patent ,medicine.disease ,Heart Septal Defects, Atrial ,Echocardiography ,Internal medicine ,medicine ,Patent foramen ovale ,Cardiology ,Contrast (vision) ,Humans ,Radiology, Nuclear Medicine and imaging ,Cardiology and Cardiovascular Medicine ,business ,Saline ,Echocardiography, Transesophageal ,media_common - Published
- 2020
10. Impact of Right Ventricular Dilatation in Patients with Atrial Septal Defect
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Hiroshi Ito, Yoichi Takaya, Saori Nobusada, Rie Nakayama, Teiji Akagi, Norihisa Toh, Nobuhisa Watanabe, Susumu Kanazawa, Koji Nakagawa, and Toshi Matsushita
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Adult ,Male ,medicine.medical_specialty ,Article Subject ,Heart Ventricles ,Magnetic Resonance Imaging, Cine ,Heart Septal Defects, Atrial ,Cardiac magnetic resonance imaging ,Cardiopulmonary exercise test ,Internal medicine ,medicine ,Humans ,Diseases of the circulatory (Cardiovascular) system ,Radiology, Nuclear Medicine and imaging ,In patient ,Clinical significance ,Correlation of Data ,Heart septal defect ,Exercise Tolerance ,medicine.diagnostic_test ,business.industry ,Patient Selection ,VO2 max ,Magnetic resonance imaging ,Organ Size ,Middle Aged ,medicine.disease ,Right ventricular dilatation ,RC666-701 ,Exercise Test ,Cardiology ,Female ,Cardiology and Cardiovascular Medicine ,business ,Research Article - Abstract
Objective. The aim of this study was to examine the relationship between right ventricular (RV) volume and exercise capacity in adult patients with atrial septal defect (ASD) and to determine the degree of RV dilatation for transcatheter ASD closure. Background. RV dilatation is an indication of transcatheter ASD closure; however, few studies have reported the clinical significance of RV dilatation. Methods. We enrolled 82 consecutive patients (mean age, 49 ± 18 years; female, 68%) who underwent cardiac magnetic resonance imaging and symptom-limited cardiopulmonary exercise test before ASD closure. The relationship between RV volume and peak oxygen uptake (VO2) was evaluated. Results. The mean RV end-diastolic volume index was 108 ± 27 ml/m2 (range, 46 to 180 ml/m2). The mean peak VO2 was 24 ± 7 ml/min/kg (range, 14 to 48 ml/min/kg), and the mean predicted peak VO2 was 90 ± 23%. There were significant negative relationships of RV end-diastolic volume index with peak VO2 (r = −0.28, p<0.01) and predicted peak VO2 (r = −0.29, p<0.01). The cutoff value of RV end-diastolic volume index 2 was 120 ml/m2, with the sensitivity of 49% and the specificity of 89%. Conclusions. There was a relationship between RV dilatation and exercise capacity in adult patients with ASD. RV end-diastolic volume index ≥120 ml/m2 was related to the reduction in peak VO2. This criterion of RV dilatation may be valuable for the indication of transcatheter ASD closure.
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- 2020
11. Clinical Significance of Septal Malalignment for Transcatheter Closure of Atrial Septal Defect
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Hiroshi Ito, Norihisa Toh, Nobuhisa Watanabe, Teiji Akagi, Yoichi Takaya, Koji Nakagawa, Takashi Miki, and Rie Nakayama
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Adult ,Male ,Cardiac Catheterization ,medicine.medical_specialty ,Article Subject ,Septal Occluder Device ,Septum secundum ,Heart Septal Defects, Atrial ,Prosthesis Implantation ,Humans ,Medicine ,Diseases of the circulatory (Cardiovascular) system ,Radiology, Nuclear Medicine and imaging ,Clinical significance ,In patient ,Heart septal defect ,Atrial Septum ,business.industry ,Equipment Design ,medicine.disease ,Surgery ,Outcome and Process Assessment, Health Care ,RC666-701 ,Device Embolization ,Aortic Rim ,Female ,Septum primum ,Cardiology and Cardiovascular Medicine ,business ,Echocardiography, Transesophageal ,Research Article - Abstract
Background. Septal malalignment is related to erosion and device embolization in transcatheter closure of atrial septal defect (ASD), but limited information is available. Objectives. This study aimed to assess clinical significance of septal malalignment and to determine appropriate evaluation of ASD diameter, including the selection of device size. Methods. Four hundred and seventeen patients with ASD who underwent transcatheter closure were enrolled. Septal malalignment was defined as separation between the septum primum and the septum secundum on transesophageal echocardiography. Results. One hundred and eighty-four patients had septal malalignment. The frequency of septal malalignment increased with age reaching around 50% in adult patients. Septal malalignment was related to aortic rim deficiency. The distance of separation between the septum primum and the septum secundum was 5 ± 2 mm (range, 1–11 mm). In patients with septal malalignment, the ASD diameter measured at the septum primum was 19 ± 6 mm, while the ASD diameter measured at the septum secundum was 16 ± 6 mm. There was a difference of 4 ± 2 mm (range, 0–8 mm) between the ASD diameter measured at the septum primum and that measured at the septum secundum. For transcatheter closure, the Amplatzer Septal Occluder device size 2-3 mm larger and the Occlutech Figulla Flex II device size 4–7 mm larger than the ASD diameter measured at the septum primum were frequently used. During the study period, erosion or device embolization did not occur in all of the patients. Conclusions. Septal malalignment is highly prevalent in adult patients with aortic rim deficiency. The measurement of ASD diameter at the septum primum can be valuable for the selection of device size in patients with septal malalignment.
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- 2020
12. High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP
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Takayuki Nagae, Hiroyuki Yamada, and Nobuhisa Watanabe
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0301 basic medicine ,Models, Molecular ,Stereochemistry ,Protein Conformation ,010402 general chemistry ,medicine.disease_cause ,Crystallography, X-Ray ,01 natural sciences ,Cofactor ,Crystal ,03 medical and health sciences ,chemistry.chemical_compound ,Folic Acid ,Structural Biology ,Oxidoreductase ,Catalytic Domain ,Dihydrofolate reductase ,medicine ,Escherichia coli ,Pressure ,Molecule ,chemistry.chemical_classification ,Binding Sites ,biology ,Nicotinamide ,Active site ,0104 chemical sciences ,Kinetics ,Tetrahydrofolate Dehydrogenase ,030104 developmental biology ,chemistry ,biology.protein ,NADP - Abstract
A high-pressure crystallographic study was conducted on Escherichia coli dihydrofolate reductase (ecDHFR) complexed with folate and NADP+ in crystal forms containing both the open and closed conformations of the M20 loop under high-pressure conditions of up to 800 MPa. At pressures between 270 and 500 MPa the crystal form containing the open conformation exhibited a phase transition from P21 to C2. Several structural changes in ecDHFR were observed at high pressure that were also accompanied by structural changes in the NADP+ cofactor and the hydration structure. In the crystal form with the closed conformation the M20 loop moved as the pressure changed, with accompanying conformational changes around the active site, including NADP+ and folate. These movements were consistent with the suggested hypothesis that movement of the M20 loop was necessary for ecDHFR to catalyze the reaction. In the crystal form with the open conformation the nicotinamide ring of the NADP+ cofactor undergoes a large flip as an intermediate step in the reaction, despite being in a crystalline state. Furthermore, observation of the water molecules between Arg57 and folate elucidated an early step in the substrate-binding pathway. These results demonstrate the possibility of using high-pressure protein crystallography as a method to capture high-energy substates or transient structures related to the protein reaction cycle.
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- 2018
13. Potential benefit of a simultaneous, side-by-side display of contrast MDCT and echocardiography over routine sequential imaging for assessment of adult congenital heart disease: A preliminary study
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Kazuhiro Osawa, Susumu Kanazawa, Nobuhisa Watanabe, Toru Miyoshi, Teiji Akagi, Hiroki Oe, and Hiroshi Ito
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Adult ,Heart Defects, Congenital ,Male ,medicine.medical_specialty ,Heart disease ,media_common.quotation_subject ,Functional features ,Contrast Media ,030204 cardiovascular system & hematology ,Doppler echocardiography ,Multimodal Imaging ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Valvular disease ,Internal medicine ,Multidetector Computed Tomography ,medicine ,Contrast (vision) ,Humans ,cardiovascular diseases ,media_common ,Aged ,medicine.diagnostic_test ,business.industry ,Middle Aged ,medicine.disease ,Echocardiography ,Sonographer ,cardiovascular system ,Cardiology ,Imaging technology ,Female ,Tomography ,Radiology ,Cardiology and Cardiovascular Medicine ,business - Abstract
Background Management of adult congenital heart disease (ACHD) patients requires understanding of its complex morphology and functional features. An innovative imaging technique has been developed to display a virtual multi-planar reconstruction obtained from contrast-enhanced multidetector-computed tomography (MDCT) corresponding to the same cross-sectional image from transthoracic echocardiography (TTE). The aim of this study is to assess the usefulness of this imaging technology in ACHD patients. Methods This study consisted of 46 consecutive patients (30 women; mean age, 52 ± 18 years old) with ACHD who had undergone contrast MDCT. All patients underwent TTE within a week of MDCT. An experienced sonographer who did not know the results of MDCT conducted a diagnosis using TTE and, then, using the new imaging technology. We studied whether this imaging technology provided additional or unexpected findings or makes more accurate diagnosis. Results In this imaging technology, MDCT cross-section provides higher-resolution image to the deep compared to corresponding TTE image. Depending on the MDCT section which can be arbitrarily set under the echo guide, we can diagnose unexpected or incremental lesions or more accurately assess the severity of the lesion in 27 patients (59%) compared to TTE study alone. This imaging technology was useful in the following situations: 1. For anatomical guidance for Doppler flow assessment. 2. Assessment of morphology of obstruction in outflow tracts or conduit. 3. To clarify the etiology of unordinary severe valvular disease. 4. Assessment of the patient with diseased prosthetic valves. Conclusions This integrated imaging technology provides incremental role over TTE in complex anatomy, and allows functional information in ACHD patients.
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- 2018
14. Thermal mineralization behavior of PFOA, PFHxA, and PFOS during reactivation of granular activated carbon (GAC) in nitrogen atmosphere
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Shusuke Takemine, Katsuya Yamamoto, Nobuhisa Watanabe, and Mitsuyasu Takata
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Nitrogen ,Health, Toxicology and Mutagenesis ,0211 other engineering and technologies ,02 engineering and technology ,010501 environmental sciences ,Waste Disposal, Fluid ,01 natural sciences ,Mineralization (biology) ,chemistry.chemical_compound ,Adsorption ,medicine ,Sodium Hydroxide ,Environmental Chemistry ,Effluent ,0105 earth and related environmental sciences ,Fluorocarbons ,021110 strategic, defence & security studies ,Chemistry ,Temperature ,Fluorine ,General Medicine ,Pollution ,Charcoal ,Reagent ,Environmental chemistry ,Hydroxide ,Perfluorooctanoic acid ,Water Pollutants, Chemical ,Activated carbon ,medicine.drug ,Waste disposal - Abstract
Waste disposal site is one of the important sinks of chemicals. A significant amount of perfluoroalkyl and polyfluoroalkyl substances (PFASs) such as perfluorooctanoic acid (PFOA), perfluorooctane sulfonate (PFOS), and perfluorohexanoic acid (PFHxA) have been brought into it. Because of their aqueous solubility, PFASs are released to landfill effluent waters, from which PFASs are efficiently collected by adsorption technique using granular activated carbon (GAC). The exhausted GAC is reactivated by heating processes. The mineralization of PFASs during the reactivation process was studied. Being thermally treated in N2 atmosphere, the recovery rate of mineralized fluorine and PFC homologues including short-chained perfluorocarboxylic acids was determined. If the reagent form of PFOA, PFHxA, and PFOS were treated at 700 °C, the recovery of mineralized fluorine was less than 30, 46, and 72 %, respectively. The rate increased to 51, 74, and 70 %, if PFASs were adsorbed onto GAC in advance; moreover, addition of excess sodium hydroxide (NaOH) improved the recovery to 74, 91, and 90 %. Residual PFAS homologue was less than 1 % of the original amount. Steamed condition did not affect destruction. The significant role of GAC was to suppress volatile release of PFASs from thermal ambient, whereas NaOH enhanced destruction and retained mineralized fluorine on the GAC surface. Comparing the recovery of mineralized fluorine, the degradability of PFOS was considered to be higher than PFOA and PFHxA. Whole mass balance missing 9~26 % of initial amount suggested formation of some volatile organofluoro compounds beyond analytical coverage.
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- 2015
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15. Infective Endocarditis of Patent Foramen Ovale Closure Device Presenting as an Amoeboid-Like Mass
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Hidenaru Yamaoka, Norihisa Toh, Nobuhisa Watanabe, Koji Nakagawa, Hiroshi Ito, Teiji Akagi, Yoichi Takaya, Shingo Kasahara, and Yasuhiro Kotani
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medicine.medical_specialty ,business.industry ,Dental procedures ,Closure (topology) ,030204 cardiovascular system & hematology ,medicine.disease ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,030228 respiratory system ,Infective endocarditis ,medicine ,Cribriform ,Patent foramen ovale ,Cardiology and Cardiovascular Medicine ,business - Abstract
A 73-year-old woman presented with fever and Janeway lesions on her palms. She had undergone transcatheter patent foramen ovale closure with a 30-mm Amplatzer Cribriform device (Abbott, Chicago, Illinois) 6 years before. Two months before onset, she had received dental procedures without antibiotic
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- 2018
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16. Echocardiographic Estimates of Left Ventricular Diastolic Dysfunction Do Not Predict the Clinical Course in Elderly Patients Undergoing Transcatheter Atrial Septal Defect Closure: Impact of Early Diastolic Mitral Annular Velocity
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Teiji Akagi, Nobuhisa Watanabe, Manabu Taniguchi, Hiroshi Ito, Yoichi Takaya, Yasufumi Kijima, Koji Nakagawa, and Hiroki Oe
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Male ,medicine.medical_specialty ,medicine.drug_class ,Diastole ,030204 cardiovascular system & hematology ,Heart Septal Defects, Atrial ,03 medical and health sciences ,Ventricular Dysfunction, Left ,0302 clinical medicine ,Internal medicine ,Mitral valve ,Natriuretic Peptide, Brain ,medicine ,Natriuretic peptide ,Humans ,Radiology, Nuclear Medicine and imaging ,030212 general & internal medicine ,Aged ,Retrospective Studies ,Heart Failure ,Heart septal defect ,business.industry ,Mitral annular velocity ,Clinical course ,Age Factors ,Retrospective cohort study ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Treatment Outcome ,Echocardiography ,Cardiology ,Early diastolic ,Mitral Valve ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Objective This study evaluated the effect of echocardiographic left ventricular (LV) diastolic dysfunction on acute congestive heart failure after transcatheter atrial septal defect (ASD) closure in elderly patients. Background Although there is concern that LV diastolic dysfunction develops acute congestive heart failure after ASD closure, limited information is available regarding the influence, especially in elderly patients with severe LV diastolic dysfunction. Methods Two hundred consecutive patients older than 60 years were divided into 3 groups according to echocardiographic LV diastolic dysfunction: severe (early diastolic mitral annular velocity [e’]
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- 2017
17. Behavior of Perfluorinated Compounds Adsorbed in Exhausted Activated Carbon during Thermal Treatment and Combustion
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Mitsuyasu Takata, Shuhei Tanaka, Ryouta Nishioka, Shusaku Yamamoto, Shigeo Fujii, Shusuke Takemine, and Nobuhisa Watanabe
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Adsorption ,Chemistry ,Inorganic chemistry ,medicine ,Thermal treatment ,Combustion ,Activated carbon ,medicine.drug - Published
- 2013
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18. Usefulness of the Right Parasternal Approach to Evaluate the Morphology of Atrial Septal Defect for Transcatheter Closure Using Two-Dimensional and Three-Dimensional Transthoracic Echocardiography
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Norihisa Toh, Nobuhisa Watanabe, Hiroshi Ito, Yasuharu Tanabe, Teiji Akagi, Kengo Kusano, Manabu Taniguchi, Shunji Sano, and Norio Koide
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Septal Occluder Device ,Echocardiography, Three-Dimensional ,Diagnostic concordance ,Heart Septal Defects, Atrial ,Atrial septal defects ,Prosthesis Implantation ,Young Adult ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,In patient ,Child ,Aged ,Aged, 80 and over ,Heart septal defect ,business.industry ,Significant difference ,Middle Aged ,medicine.disease ,Echocardiography ,Parasternal line ,Female ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,Echocardiography, Transesophageal - Abstract
The aim of this study was to demonstrate the feasibility and usefulness of addition of the right parasternal approach to the conventional left parasternal and apical approaches using two-dimensional (2D) and three-dimensional (3D) transthoracic echocardiography (TTE) for morphologic evaluation in cases of transcatheter closure of atrial septal defects (ASDs).In 112 consecutive patients with ASDs, the morphology of the defects was evaluated for transcatheter closure in the right parasternal view in addition to the conventional left views using 2D and 3D TTE. Measurements of the maximal ASD diameter and detection of deficient rim obtained on 2D TTE were compared with those obtained by 2D transesophageal echocardiography. The shapes and locations of ASDs visualized by 3D TTE were compared with those visualized by 3D transesophageal echocardiography.In 88 patients (80.0%), optimal images from the right parasternal approach for morphologic evaluation of ASDs were obtained. Although there was a significant difference in maximal ASD diameter obtained only in the conventional left approach compared with transesophageal echocardiographic measurements (P.05), when the right parasternal approach was applied, a significant difference was not found (P = .18), and the diagnostic concordance of the rim deficiency was improved from 85.2% to 90.9%. Three-dimensional TTE from the right parasternal approach improved visualization of the shape and location of ASDs from 65.5% to 74.5%.Additional use of the right parasternal approach enables detailed morphologic evaluation for transcatheter closure of ASDs. In patients with suboptimal images on 3D TTE in the left conventional approach, additional 3D TTE in the right parasternal approach can improve the feasibility of obtaining optimal 3D images to evaluate the shapes and locations of ASDs.
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- 2012
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19. High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
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Leonard M. G. Chavas, Takashi Kawamura, Masashi Hasegawa, Nobuhisa Watanabe, Takayuki Nagae, Chiaki Kato, and Ken Niwa
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Protein Denaturation ,Shewanella ,Dimer ,Hydrostatic pressure ,high-pressure protein crystallography ,Dehydrogenase ,water penetration ,Crystallography, X-Ray ,3-Isopropylmalate Dehydrogenase ,Structure-Activity Relationship ,chemistry.chemical_compound ,Structural Biology ,Enzyme Stability ,Hydrostatic Pressure ,medicine ,Denaturation (biochemistry) ,Shewanella oneidensis ,biology ,Chemistry ,General Medicine ,Penetration (firestop) ,pressure denaturation ,biology.organism_classification ,Research Papers ,Crystallography ,Biophysics ,Swelling ,medicine.symptom - Abstract
Structures of 3-isopropylmalate dehydrogenase were determined at pressures ranging from 0.1 to 650 MPa. Comparison of these structures gives a detailed picture of the swelling of a cavity at the dimer interface and the generation of a new cleft on the molecular surface, which are accompanied by water penetration., Hydrostatic pressure induces structural changes in proteins, including denaturation, the mechanism of which has been attributed to water penetration into the protein interior. In this study, structures of 3-isopropylmalate dehydrogenase (IPMDH) from Shewanella oneidensis MR-1 were determined at about 2 Å resolution under pressures ranging from 0.1 to 650 MPa using a diamond anvil cell (DAC). Although most of the protein cavities are monotonically compressed as the pressure increases, the volume of one particular cavity at the dimer interface increases at pressures over 340 MPa. In parallel with this volume increase, water penetration into the cavity could be observed at pressures over 410 MPa. In addition, the generation of a new cleft on the molecular surface accompanied by water penetration could also be observed at pressures over 580 MPa. These water-penetration phenomena are considered to be initial steps in the pressure-denaturation process of IPMDH.
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- 2012
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20. Direct visualization of the laceration of a dissected pulmonary artery by transthoracic echocardiography: comparison with surgical findings
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Hiroshi Ito, Nobuhisa Watanabe, Shingo Kasahara, and Hiroki Oe
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Adult ,Male ,medicine.medical_specialty ,business.industry ,Hypertension, Pulmonary ,MEDLINE ,Pulmonary Artery ,medicine.disease ,Surgery ,Visualization ,Aortic Dissection ,Text mining ,Aneurysm ,Echocardiography ,medicine.artery ,Pulmonary artery ,Humans ,Medicine ,Echocardiography transthoracic ,Radiology ,Cardiology and Cardiovascular Medicine ,business - Published
- 2017
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21. Application of Real-Time Three-Dimensional Transesophageal Echocardiography Using a Matrix Array Probe for Transcatheter Closure of Atrial Septal Defect
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Koji Nakagawa, Yoshio Okamoto, Manabu Taniguchi, Shunji Sano, Teiji Akagi, Shinichi Ohtsuki, Norihisa Toh, Yasufumi Kijima, Nobuhisa Watanabe, and Kengo Fukushima Kusano
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Adult ,Cardiac Catheterization ,medicine.medical_specialty ,Adolescent ,genetic structures ,Matrix Array ,Transducers ,Treatment outcome ,Echocardiography, Three-Dimensional ,Heart Septal Defects, Atrial ,Atrial septal defects ,Young Adult ,Computer Systems ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Child ,Aged ,Heart septal defect ,business.industry ,Maximal diameter ,Limits of agreement ,Equipment Design ,Balloon Occlusion ,Middle Aged ,medicine.disease ,Equipment Failure Analysis ,Treatment Outcome ,Three dimensional imaging ,Surgery, Computer-Assisted ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,human activities ,Echocardiography, Transesophageal - Abstract
Background The aim of this study was to demonstrate the utility of real-time three-dimensional (3D) transesophageal echocardiography (RT3D-TEE) using a matrix array 3D transesophageal echocardiographic probe for morphologic evaluation and guidance of transcatheter closure of atrial septal defects (ASDs). Methods Forty-eight consecutive patients scheduled for the intervention were included. Two-dimensional (2D) transesophageal echocardiography (2D-TEE) and RT3D-TEE were performed before and during the procedures. Measurements of maximal ASD diameter and surrounding rims obtained on RT3D-TEE were compared with those obtained on 2D-TEE. Results In 46 patients (96%), optimal 3D images for the morphologic evaluation of ASDs were obtained. RT3D-TEE facilitated the evaluation of ASD morphology and surrounding rims and was able to provide intraprocedural information clearly. A Bland-Altman plot showed a mean maximal diameter difference of −0.12 mm between the means (95% limits of agreement, −2.2 to 2.5 mm). Conclusion RT3D-TEE is a clinically useful, complementary option to 2D-TEE for evaluation of ASD morphology and for interventional guidance.
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- 2009
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22. Structural Basis for Multimeric Heme Complexation through a Specific Protein-Heme Interaction
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Makoto Kuroda, Nobuhisa Watanabe, Masato Watanabe, Toshiko Ohta, Fumio Arisaka, Kouhei Tsumoto, Yoshikazu Tanaka, Ayuko Suenaga, Isao Tanaka, and Min Yao
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Specific protein ,Chemistry ,Isothermal titration calorimetry ,Cell Biology ,Crystal structure ,medicine.disease_cause ,Biochemistry ,chemistry.chemical_compound ,Staphylococcus aureus ,medicine ,Mutation testing ,Biophysics ,Molecule ,Receptor ,Molecular Biology ,Heme - Abstract
To elucidate the heme acquisition system in pathogenic bacteria, we investigated the heme-binding properties of the third NEAT domain of IsdH (IsdH-NEAT3), a receptor for heme located on the surfaces of pathogenic bacterial cells, by using x-ray crystallography, isothermal titration calorimetry, examination of absorbance spectra, mutation analysis, size-exclusion chromatography, and analytical ultracentrifugation. We found the following: 1) IsdH-NEAT3 can bind with multiple heme molecules by two modes; 2) heme was bound at the surface of IsdH-NEAT3; 3) candidate residues proposed from the crystal structure were not essential for binding with heme; and 4) IsdH-NEAT3 was associated into a multimeric heme complex by the addition of excess heme. From these observations, we propose a heme-binding mechanism for IsdH-NEAT3 that involves multimerization and discuss the biological importance of this mechanism.
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- 2008
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23. Biatrial Appendage Thrombi in a Heart Failure Patient With Sinus Rhythm: Detailed Assessment by Real-Time 3-Dimensional Transesophageal Echocardiography
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Nobuhisa Watanabe, Hiroshi Ito, Hiroki Oe, Yuko Ohno, and Toshiaki Yamanaka
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Adult ,Male ,medicine.medical_specialty ,Pleural effusion ,030204 cardiovascular system & hematology ,Pericardial effusion ,03 medical and health sciences ,0302 clinical medicine ,Imaging, Three-Dimensional ,Computer Systems ,Heart Rate ,Physiology (medical) ,Internal medicine ,Heart rate ,medicine ,Humans ,Sinus rhythm ,Atrial Appendage ,030212 general & internal medicine ,Heart Failure ,Ejection fraction ,business.industry ,Thrombosis ,medicine.disease ,Brain natriuretic peptide ,Heart failure ,Cardiology ,Crackles ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,business ,Echocardiography, Transesophageal - Abstract
A 38-year-old man was referred to our hospital because of progressive dyspnea on exertion. He was diagnosed as having congestive heart failure. On physical examination, his blood pressure was 118/86 mm Hg, and his heart rate was regular at 80 beats/min. On admission, jugular venous distension was detected, a third heat sound was audible, and auscultation of the lungs revealed bilateral coarse crackles and diminished breath sounds. Peripheral edema was also detected. A chest x-ray film showed a marked cardiac silhouette, with right-sided pleural effusion (Figure 1A). ECG on admission showed sinus rhythm with poor R progression and ST depression in aVF and V6 leads (Figure 1B). A blood test showed elevated plasma brain natriuretic peptide (417.9 pg/mL) and d-dimer (6.7 μg/m) levels. Transthoracic echocardiography revealed normal-sized left and right ventricles and the presence of a small amount of pericardial effusion; the left ventricular ejection fraction was severely decreased. The left and right atria were markedly …
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- 2016
24. Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus
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Yoshikazu Tanaka, Makoto Kuroda, Kouhei Tsumoto, Yoshiaki Yasutake, Min Yao, Nobuhisa Watanabe, Toshiko Ohta, and Isao Tanaka
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Staphylococcus aureus ,Chemistry ,Crystal structure ,Crystallography, X-Ray ,medicine.disease_cause ,Biochemistry ,Recombinant Proteins ,Protein Structure, Tertiary ,Microbiology ,Structural genomics ,C protein ,Bacterial Proteins ,Structural Biology ,Multigene Family ,ESAT-6 ,medicine ,Secretion ,Molecular Biology ,Forkhead-associated domain - Published
- 2007
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25. Structural Insights into HIV-1 Vif-APOBEC3F Interaction
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Nobuhisa Watanabe, Shinya Tsuzuki, Yasumasa Iwatani, Yoshiyuki Yokomaku, Kazuhiro Matsuoka, Yuriko Naganawa, Shingo Kitamura, Masaaki Nakashima, Hirotaka Ode, Atsuko Hachiya, Takashi Kawamura, Wataru Sugiura, Michiko Nemoto, and Hiroaki Awazu
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0301 basic medicine ,Models, Molecular ,Protein Conformation ,viruses ,Immunology ,DNA Mutational Analysis ,Human immunodeficiency virus (HIV) ,Biology ,medicine.disease_cause ,Crystallography, X-Ray ,Microbiology ,Cytosine Deaminase ,Hydrophobic effect ,03 medical and health sciences ,chemistry.chemical_compound ,Protein structure ,Virology ,Cytidine Deaminase ,Hydrolase ,Protein Interaction Mapping ,medicine ,vif Gene Products, Human Immunodeficiency Virus ,030102 biochemistry & molecular biology ,Structure and Assembly ,virus diseases ,Cytidine ,Cytidine deaminase ,biochemical phenomena, metabolism, and nutrition ,030104 developmental biology ,Biochemistry ,chemistry ,Insect Science ,Proteolysis ,Biophysics ,Mutagenesis, Site-Directed ,Sequence motif - Abstract
The HIV-1 Vif protein inactivates the cellular antiviral cytidine deaminase APOBEC3F (A3F) in virus-infected cells by specifically targeting it for proteasomal degradation. Several studies identified Vif sequence motifs involved in A3F interaction, whereas a Vif-binding A3F interface was proposed based on our analysis of highly similar APOBEC3C (A3C). However, the structural mechanism of specific Vif-A3F recognition is still poorly understood. Here we report structural features of interaction interfaces for both HIV-1 Vif and A3F molecules. Alanine-scanning analysis of Vif revealed that six residues located within the conserved Vif F1-, F2-, and F3-box motifs are essential for both A3C and A3F degradation, and an additional four residues are uniquely required for A3F degradation. Modeling of the Vif structure on an HIV-1 Vif crystal structure revealed that three discontinuous flexible loops of Vif F1-, F2-, and F3-box motifs sterically cluster to form a flexible A3F interaction interface, which represents hydrophobic and positively charged surfaces. We found that the basic Vif interface patch (R17, E171, and R173) involved in the interactions with A3C and A3F differs. Furthermore, our crystal structure determination and extensive mutational analysis of the A3F C-terminal domain demonstrated that the A3F interface includes a unique acidic stretch (L291, A292, R293, and E324) crucial for Vif interaction, suggesting additional electrostatic complementarity to the Vif interface compared with the A3C interface. Taken together, these findings provide structural insights into the A3F-Vif interaction mechanism, which will provide an important basis for development of novel anti-HIV-1 drugs using cellular cytidine deaminases. IMPORTANCE HIV-1 Vif targets cellular antiviral APOBEC3F (A3F) enzyme for degradation. However, the details on the structural mechanism for specific A3F recognition remain unclear. This study reports structural features of interaction interfaces for both HIV-1 Vif and A3F molecules. Three discontinuous sequence motifs of Vif, F1, F2, and F3 boxes, assemble to form an A3F interaction interface. In addition, we determined a crystal structure of the wild-type A3F C-terminal domain responsible for the Vif interaction. These results demonstrated that both electrostatic and hydrophobic interactions are the key force driving Vif-A3F binding and that the Vif-A3F interfaces are larger than the Vif-A3C interfaces. These findings will allow us to determine the configurations of the Vif-A3F complex and to construct a structural model of the complex, which will provide an important basis for inhibitor development.
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- 2015
26. Abstract 13492: Usefulness of Aortic Valve Area Measurement Obtained by Single-Beat Recording of Double-Envelope Technique in Patients With Aortic Stenosis and Atrial Fibrillation
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Hitomi Sakamoto, Rika Takemoto, Hiroshi Morita, Hiroshi Ito, Madoka Ikeda, Nobuhisa Watanabe, Kazufumi Nakamura, Hiroki Oe, Yuko Ohno, and Kunihisa Kohno
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medicine.medical_specialty ,business.industry ,Beat (acoustics) ,Atrial fibrillation ,medicine.disease ,Stenosis ,Aortic valve area ,Physiology (medical) ,Internal medicine ,medicine ,Cardiology ,In patient ,Doppler ultrasound ,Cardiology and Cardiovascular Medicine ,business - Abstract
Introduction: In patients with aortic stenosis (AS) and atrial fibrillation (AF), the conventional continuity equation to evaluate aortic valve area (AVA) is cumbersome, because 5 to 10 cycles are required to ensure accuracy of results. Double-envelope (DE) is obtained by a single continuous-wave Doppler envelope with double density velocity profiles; the inner envelope represents flow across the left ventricular outflow tract and outer envelope represents flow across the aortic valve orifice. Hypothesis: The aim of this study to evaluate the usefulness of the AVA calculated from single-beat recorded inner and outer envelopes in patients with AS and AF. Methods: Eighteen AS patients (74.6±7.2 years old) with AF were examined by transthoracic echocardiography. The conventional AVA (PW/CW technique) was calculated from nonsimultaneously measured LVOT flow and AVO flow in randomly picked up 8 cardiac cycles, respectively. The AVA (DE technique) was calculated from the inner and outer envelopes simultaneously recorded. A single-beat AVA was calculated from simultaneously recorded inner and outer envelopes (by DE technique) when the preceding RR interval/pre-preceding RR interval = 1. Bland-Altman analysis was used to compare the results of two techniques and estimate the reproducibility. Results: DE profiles were successfully obtained in all patients, and mean AVA (PW/CW technique) was 1.09±0.19 cm2. AVA by Single-beat DE technique showed good correlation with that by PW/CW technique (r=0.90), and the mean bias in the AVA measurements between by PW/CW technique and by DE technique was 0.048 cm2. (Figure) Conclusions: AVA in patients with AS and AF obtained by Single-beat DE technique was feasible and in good agreement with that by PW/CW technique. We suggest that DE technique should be considered to estimate the subtle temporal change of AVA in patient with AS and AF more simply and accurately.
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- 2014
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27. Crystallization and Preliminary X-Ray Studies of the DNA-Binding Domain of Hepatocyte Nuclear Factor-6α Complexed with DNA
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Jun Nishihira, Daisuke Iyaguchi, Min Yao, Nobuhisa Watanabe, and Isao Tanaka
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Cell ,General Medicine ,DNA-binding domain ,Biology ,Biochemistry ,Molecular biology ,law.invention ,chemistry.chemical_compound ,Hepatocyte nuclear factors ,medicine.anatomical_structure ,chemistry ,Structural Biology ,Hepatocyte Nuclear Factor 6 ,law ,medicine ,Crystallization ,Transcription factor ,Gene ,DNA - Abstract
Hepatocyte nuclear factor 6 (HNF-6)/OC-1, a part of liver-enriched transcription factor, controls pancreas and liver development and regulates expression of several hepatic genes. DNA-binding region of HNF-6alpha bound to a 14-mer DNA fragment has been crystallized by the hanging drop vapor diffusion method. The crystals belong to space group P2 with unit cell parameters of a = 73.0 A, b = 39.0 A, c = 106.5 A, beta = 107.6 degrees. X-ray diffraction data were collected to 2.0 A resolution.
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- 2006
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28. Combined Subaortic and Mid-ventricular Obstruction With Significant Aortic Stenosis Diagnosed by Triphasic Doppler Flow Pattern
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Satoko Ugawa, Norihisa Toh, Nobuhisa Watanabe, Yasuharu Tanabe, Masami Takagaki, Akihito Miyoshi, Shunji Sano, Hiroki Oe, and Hiroshi Ito
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medicine.medical_specialty ,Ventricular function ,business.industry ,Follow up studies ,Ventricular outflow tract obstruction ,medicine.disease ,Surgery ,Stenosis ,Doppler flow ,Text mining ,Internal medicine ,Severity of illness ,Cardiology ,Medicine ,medicine.symptom ,business ,Cardiology and Cardiovascular Medicine - Published
- 2012
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29. Expression, purification, crystallization and preliminary X-ray diffraction analysis of the human calcium-binding protein MRP14 (S100A9)
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Min Yao, Nobuhisa Watanabe, Ikuko Fujita, Kohtaro Ishikawa, Hiroshi Itou, Jun Nishihira, Masaki Suzuki, and Isao Tanaka
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Myeloid ,Molecular Sequence Data ,Crystallography, X-Ray ,S100A9 ,law.invention ,Structural Biology ,law ,Calcium-binding protein ,medicine ,Calgranulin B ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Crystallization ,Cloning ,Sequence Homology, Amino Acid ,Chemistry ,S100 Proteins ,Resolution (electron density) ,General Medicine ,Antigens, Differentiation ,Molecular biology ,medicine.anatomical_structure ,X-ray crystallography ,Recombinant DNA ,Calcium - Abstract
MRP14 is a protein that is specifically expressed in myeloid and epithelial cells during the stages of acute or chronic inflammatory states such as rheumatoid arthritis or sarcoidosis. MRP14 has EF-hand motifs as Ca(2+)-binding sites and belongs to the S100 family of proteins. This paper deals with the sample preparation (cloning, overexpression and purification), crystallization and preliminary crystallographic analysis of recombinant human MRP14. Crystals of MRP14 were obtained by the hanging-drop vapour-diffusion method. MRP14 crystals belong to space group P2(1), with unit-cell parameters a = 57.59, b = 178.44, c = 61.23 A, beta = 113.17 degrees, and diffract to 2.1 A resolution.
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- 2001
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30. E3710, a new proton pump inhibitor, with a long-lasting inhibitory effect on gastric acid secretion
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Hiroki Terauchi, Hiroshi Kato, Sou Yasui, Daisuke Iida, Masanobu Shinoda, Yoshikuni Tabata, Kotaro Kodama, Hitoshi Harada, Hiroko Kuramochi, Tetsuya Kawahara, Masato Ueda, Hideaki Fujisaki, Junichi Nagakawa, Kubota Atsuhiko, Miki Murota, Shuhei Miyazawa, Kazuo Hirota, and Nobuhisa Watanabe
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Male ,medicine.drug_class ,Swine ,Sodium ,Proton-pump inhibitor ,chemistry.chemical_element ,Pharmacology ,Esomeprazole ,Gastric Acid ,Dogs ,medicine ,Animals ,IC50 ,ED50 ,Cerebral Cortex ,Chemistry ,Reflux ,Proton Pump Inhibitors ,Hydrogen-Ion Concentration ,Crossover study ,Biochemistry ,Gastric Mucosa ,Sulfoxides ,Molecular Medicine ,Gastric acid ,Benzimidazoles ,Rabbits ,Sodium-Potassium-Exchanging ATPase ,medicine.drug ,Histamine - Abstract
We have investigated the pharmacology of sodium (R)-2-[4-(2,2-dimethyl-1,3-dioxan-5-yl) methoxy-3,5-dimethylpyridin-2-yl]methylsulfinyl-1H-benzimidazol (E3710), a new proton pump inhibitor (PPI), and its effect on gastric acid secretion. E3710 irreversibly inhibited H(+),K(+)-ATPase activity in pig gastric vesicles with an acidic internal environment with an IC(50) of 0.28 microM. Administration of E3710 (0.1, 0.2, 0.4, and 0.8 mg/kg; n = 6) intraduodenally in a gastric fistula model in dogs inhibited histamine-stimulated gastric acid secretion at 0 to 2 and 24 to 26 h after administration with ED(50) values of 0.18 and 0.22 mg/kg, respectively. The inhibition by E3710 was 2.3 times more potent than that of another representative PPI, esomeprazole (0.2, 0.4, 0.8, and 1.6 mg/kg; n = 6) at 0 to 2 h after administration (ED(50) = 0.40 mg/kg) and 2.8 times more potent at 24 to 26 h (ED(50) = 0.71 mg/kg). In the gastric fistula dogs, the intragastric pH wasor=4 for 17% (n = 27) of a 24-h period with vehicle alone, but when E3710 was administered, at 0.2 (n = 4), 0.4 (n = 8), and 0.8 mg/kg (n = 5), the pH wasor=4 for 40, 79, and 88% of a day, respectively. The corresponding values for esomeprazole at 0.8 (n = 4) and 1.6 mg/kg (n = 8) were 55 and 59%, respectively. In a crossover study with vehicle, E3710 at 0.4 mg/kg and esomeprazole at 1.6 mg/kg (n = 6), E3710 increased the intragastric pH to4 for 82% of a day compared with 61% of a day with esomeprazole. These results show that E3710 is a long-acting inhibitor of gastric acid secretion and a promising novel therapy for acid-related diseases, such as gastroesophageal reflux disease.
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- 2010
31. X-ray crystallography and structural stability of digestive lysozyme from cow stomach
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Yasuhiro Kumaki, Tomoyasu Aizawa, Makoto Demura, Masakatsu Kamiya, Takashi Kikukawa, Daisuke Akieda, Mineyuki Mizuguchi, Yasuhiro Nonaka, Keiichi Kawano, and Nobuhisa Watanabe
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Models, Molecular ,Protein Conformation ,Chemical structure ,medicine.medical_treatment ,Crystallography, X-Ray ,Biochemistry ,chemistry.chemical_compound ,Pepsin ,medicine ,Animals ,Molecular Biology ,Guanidine ,chemistry.chemical_classification ,Protease ,biology ,Stomach ,Cell Biology ,Hydrogen-Ion Concentration ,biology.organism_classification ,Recombinant Proteins ,Enzyme ,medicine.anatomical_structure ,chemistry ,Lytic cycle ,biology.protein ,Cattle ,Muramidase ,Lysozyme ,Bacteria - Abstract
In ruminants, some leaf-eating animals, and some insects, defensive lysozymes have been adapted to become digestive enzymes, in order to digest bacteria in the stomach. Digestive lysozyme has been reported to be resistant to protease and to have optimal activity at acidic pH. The structural basis of the adaptation providing persistence of lytic activity under severe gastric conditions remains unclear. In this investigation, we obtained the crystallographic structure of recombinant bovine stomach lysozyme 2 (BSL2). Our denaturant and thermal unfolding experiments revealed that BSL2 has high conformational stability at acidic pH. The high stability in acidic solution could be related to pepsin resistance, which has been previously reported for BSL2. The crystal structure of BSL2 suggested that negatively charged surfaces, a shortened loop and salt bridges could provide structural stability, and thus resistance to pepsin. It is likely that BSL2 loses lytic activity at neutral pH because of adaptations to resist pepsin.
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- 2009
32. Transcatheter closure of atrial septal defect in elderly patients with permanent atrial fibrillation
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Norihisa Toh, Nobuhisa Watanabe, Yasuharu Tanabe, Yoshio Okamoto, Kengo Fukushima Kusano, Shunji Sano, Manabu Taniguchi, Shinichi Ohtsuki, Teiji Akagi, and Koji Nakagawa
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Male ,medicine.medical_specialty ,Cardiac Catheterization ,Time Factors ,medicine.drug_class ,Hemodynamics ,Heart Septal Defects, Atrial ,Ventricular Function, Left ,Internal medicine ,Atrial Fibrillation ,Natriuretic Peptide, Brain ,medicine ,Natriuretic peptide ,Humans ,Radiology, Nuclear Medicine and imaging ,Ventricular remodeling ,Diuretics ,Aged ,Fibrillation ,Aged, 80 and over ,Heart septal defect ,Ventricular Remodeling ,business.industry ,Warfarin ,Anticoagulants ,Atrial fibrillation ,General Medicine ,Equipment Design ,Middle Aged ,medicine.disease ,Catheter ,Treatment Outcome ,Cardiology ,Ventricular Function, Right ,Feasibility Studies ,Female ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,business ,Biomarkers ,Echocardiography, Transesophageal ,medicine.drug - Abstract
Objectives: The aim of this study is to evaluate the feasibility and efficacy of device closure of atrial septal defect (ASD) in elderly patients with permanent atrial fibrillation. Background: Little is known about the feasibility of device closure of ASD in those patients. Methods: Nine consecutive patients (mean age 68.1 years) with permanent atrial fibrillation (>1 year persistent) underwent catheter closure using the Amplatzer septal occluder. Transthoracic echocardiography and plasma B-type natriuretic peptide (BNP) level were assessed before and at 24 hours; and 1, 3, and >6 months after the closure. Before the procedure, appropriate dose of warfarin was used in all, diuretics was used in 8/9. Same amount of medications were continued after the procedure. Results: ASD could be closed in all (mean device size 27.3 mm) without hemodynamic and thromboembolic complications. New York Heart Association (NYHA) functional classification was significantly improved in all patients after device closure. No hemodynamic and thromboembolic complications were observed during the follow-up period (mean 10.6 months). Although permanent atrial fibrillation did not change in all after the procedure, resting heart rate decreased from 76.2 ± 16.0 to 68.3 ± 13.2 beats/min (P = 0.015). There was statistically significant improvement in right ventricular/left ventricular diameter ratio (1.08 ± 0.16 to 0.73 ± 0.10, P = 0.008) and plasma BNP level (183.7 ± 90.5 to 94.6 ± 47.4 pg/mL, P = 0.008) after >6 months device closure. Conclusions: Even in the patients complicated with permanent fibrillation, transcatheter closure of ASD can contribute to symptomatic improvement as well as cardiac geometric remodeling. © 2009 Wiley-Liss, Inc.
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- 2009
33. Wave Intensity Has Clinical Usefulness in Evaluating Exercise Capacity in Heart Disease Patients
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Saori Nobusada, Motoaki Sugawara, Kengo Kusano, Nobuhisa Watanabe, Norihasa Toh, Yoichi Takaya, Manabu Taniguchi, and Yasuharu Tanabe
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medicine.medical_specialty ,Ejection fraction ,Heart disease ,business.industry ,Diastole ,Hemodynamics ,Blood flow ,medicine.disease ,Doppler imaging ,Internal medicine ,Circulatory system ,Cardiology ,Medicine ,business ,Anaerobic exercise - Abstract
Background: Wave intensity (WI) is a new hemodynamic index that provides information about the dynamic behavior of the heart and the vascular system and their interaction. WI can be defined at any site in the circulatory system and provide a great deal of information. However, the clinical usefulness of the second peak of WI, which is related to the ability of the left ventricle to activity stop aortic blood flow, has not been fully reported. In previous study, the magnitude of W2 was related to the inertia force of late systolic aortic flow. Also, the higher augmented inertia force, which was calculated with cardiac catheterization, was associated with greater exercise capacity. Then, we hypothesize that WI is correlated to exercise capacity. In this study, we investigated whether WI and the echocardiographic parameters would be correlated with exercise capacity. Methods: A total of 24 patients of heart disease were enrolled. WI was obtained at the right carotid artery using a color Doppler system for blood velocity measurement combined with an echo-tracking method for detecting vessel diameter changes. As echocardiographic parameters, we analyzed ejection fraction (EF), the early (E) and late (A) diastolic mitral velocities, and early (Ea) and late (Aa) diastolic velocities measured using Tissue Doppler imaging. We evaluated exercise capacity (peak VO2, VE/VCO2, and AT). We used Pearson’s correlation analysis for statistics. Results: EF, the E/A ratio, and the E/Ea ratio were not correlated to exercise capacity. However, the second peak of WI was significant correlated to the peak VO2 (r=0.50, p
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- 2009
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34. Crystallization and preliminary x-ray studies of the unliganded wild-type bovine thrombin
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Nobuhisa Watanabe, Isao Tanaka, Daisuke Iyaguchi, Eiko Toyota, and Min Yao
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Sodium ,chemistry.chemical_element ,Polyethylene glycol ,Crystallography, X-Ray ,Ligands ,Biochemistry ,law.invention ,chemistry.chemical_compound ,Thrombin ,Structural Biology ,law ,medicine ,Animals ,Crystallization ,Chemistry ,Drop (liquid) ,Wild type ,X-ray ,Bovine thrombin ,General Medicine ,Crystallography ,Mutagenesis ,Cattle ,medicine.drug - Abstract
Wild type of bovine thrombin has been crystallized in a ligand-free form by the hanging drop vapor diffusion method with polyethylene glycol 4000 and 2-propanol. The crystals belong to space group P4 3 2 12 with unit cell parameters of a = b = 87.7 A, c = 195.9 A. X-ray diffraction data were collected to 2.8 A resolution.
- Published
- 2007
35. A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
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Kouhei Tsumoto, Nobuhisa Watanabe, Yoshikazu Tanaka, Isao Tanaka, Makoto Kuroda, Yong-Gui Gao, Shuichiro Goda, Yuzuru Hiragi, Toshiko Ohta, Min Yao, and Sou Sakamoto
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Models, Molecular ,Repetitive Sequences, Amino Acid ,Circular dichroism ,Staphylococcus aureus ,MICROBIO ,Amino Acid Motifs ,Molecular Sequence Data ,Crystal structure ,Biology ,medicine.disease_cause ,Models, Biological ,Protein Structure, Secondary ,Cell wall ,Bacterial Proteins ,X-Ray Diffraction ,Structural Biology ,Cell Wall ,Scattering, Small Angle ,medicine ,Molecule ,Amino Acid Sequence ,Cell adhesion ,Molecular Biology ,Sequence Homology, Amino Acid ,Small-angle X-ray scattering ,Circular Dichroism ,Crystallography ,Helix ,CELLBIO ,Carrier Proteins ,Cell Adhesion Molecules - Abstract
SummaryThe 1.1 MDa cell-wall-associated adhesion protein of staphylococci, Ebh, consists of several distinct regions, including a large central region with 52 imperfect repeats of 126 amino acid residues. We investigated the structure of this giant molecule by X-ray crystallography, circular dichroism (CD) spectrometry, and small-angle X-ray scattering (SAXS). The crystal structure of two repeats showed that each repeat consists of two distinct three-helix bundles, and two such repeats are connected along the long axis, resulting in a rod-like structure that is 120 Å in length. CD and SAXS analyses of the samples with longer repeats suggested that each repeat has an identical structure, and that such repeats are connected tandemly to form a rod-like structure in solution, the length of which increased proportionately with the number of repeating units. On the basis of these results, it was proposed that Ebh is a 320 nm rod-like molecule with some plasticity at module junctions.
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- 2007
36. Identification of multiple amyloidogenic sequences in laminin-1
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Kentaro Hozumi, Shunsuke Urushibata, Yoshihiko Yamada, Motoyoshi Nomizu, Fumiharu Yokoyama, Shingo Kasai, Norio Nishi, Yuichi Kadoya, Nobuhisa Watanabe, and Naoki Ichikawa
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Amyloid ,Molecular Sequence Data ,Peptide ,Fibril ,Biochemistry ,chemistry.chemical_compound ,Mice ,Laminin ,medicine ,Amyloid precursor protein ,Neurites ,Tumor Cells, Cultured ,Animals ,Humans ,Amino Acid Sequence ,Basement membrane ,chemistry.chemical_classification ,biology ,Staining and Labeling ,Chemistry ,Congo Red ,Amino acid ,Congo red ,Microscopy, Electron ,medicine.anatomical_structure ,biology.protein ,Microscopy, Polarization ,Sequence Alignment - Abstract
Amyloid fibril formation is associated with several pathologies, including Alzheimer's disease, Parkinson's disease, type II diabetes, and prion diseases. Recently, a relationship between basement membrane components and amyloid deposits has been reported. The basement membrane protein, laminin, may be involved in amyloid-related diseases, since laminin is present in amyloid plaques in Alzheimer's disease and binds to amyloid precursor protein. Recently, we showed that peptide A208 (AASIKVAVSADR), the IKVAV-containing peptide, formed amyloid-like fibrils. We previously identified 60 cell adhesive sequences in laminin-1 using a total of 673 12-mer synthetic peptides. Here, we screened for additional amyloidogenic sequences among 60 cell adhesive peptides derived from laminin-1. We first examined amyloid-like fibril formation by the 60 active peptides with Congo red, a histological dye binding to many amyloid-like proteins. Thirteen peptides were stained with Congo red. Four of the 13 peptides promoted cell attachment and neurite outgrowth like the IKVAV-containing peptide. The four peptides also showed amyloid-like fibril formation in both X-ray diffraction and electron microscopic analyses. The amyloidogenic peptides contain consensus amino acid components, including both basic and acidic amino acids and Ser and Ile residues. These results indicate that at least five laminin-derived peptides can form amyloid-like fibrils. We conclude that the laminin-derived amyloidogenic peptides have the potential to form amyloid-like fibrils in vivo, possibly when laminin-1 is degraded.
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- 2007
37. Crystallization and preliminary X-ray diffraction study of the catalytic subunit of archaeal H+ -transporting ATP synthase from Pyrococcus horikoshii OT3
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Yuki Maegawa, Nobuhisa Watanabe, Isao Tanaka, Min Yao, and Haduki Morita
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biology ,ATP synthase ,Chemistry ,Protein subunit ,ATPase ,General Medicine ,medicine.disease_cause ,biology.organism_classification ,Crystallography, X-Ray ,law.invention ,Crystallography ,Pyrococcus horikoshii ,Proton-Translocating ATPases ,Structural Biology ,ATP synthase gamma subunit ,law ,Catalytic Domain ,X-ray crystallography ,biology.protein ,medicine ,Crystallization ,Escherichia coli - Abstract
H+ -transporting ATP synthase (H+ -ATPase) is a multi-subunit complex which acts to produce ATP molecules. The catalytic subunit A of the archaeal-type H+ -ATPase from Pyrococcus horikoshii OT3 was cloned, expressed in Escherichia coli, purified and crystallized by the hanging-drop vapour-diffusion method with MPD as a precipitant. X-ray intensity data were collected to 2.55 A resolution at beamline BL41XU of SPring-8. The crystals belong to the tetragonal space group P4(1)2(1)2 or P4(3)2(1)2, with unit-cell parameters a = b = 128.0, c = 104.7 A, and contain one molecule per asymmetric unit.
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- 2004
38. Large atrial septal defect visualized by real-time three-dimensional echocardiography
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Shunji Sano, Kengo Fukushima Kusano, Norio Koide, Nobuhisa Watanabe, Manabu Taniguchi, Yasuharu Tanabe, Shingo Kasahara, Takeshi Maruo, and Teiji Akagi
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medicine.medical_specialty ,Atrioventricular valve ,Right atrial enlargement ,medicine.diagnostic_test ,business.industry ,Septum secundum ,Atrial septal defects ,medicine.anatomical_structure ,Ventricle ,Internal medicine ,medicine ,Cardiology ,Radiology, Nuclear Medicine and imaging ,Atrium (heart) ,medicine.symptom ,business ,Electrocardiography ,Interatrial septum - Abstract
A 29-year-old man was hospitalized because of dyspnea and palpitation. Electrocardiography demonstrated normal sinus rhythm and borderline right atrial enlargement. Twodimensional transthoracic echocardiography (2D-TTE) revealed a normal left ventricular systolic function. There was a paradoxical septal motion consistent with right ventricular volume overload (Fig. 1a). Although the right ventricle was mildly dilated, its systolic function was preserved. 2D-TTE revealed a large atrium without distinct interatrial septum (Fig. 1b). Left-to-right shunt flow was not detected clearly through the defect on color-flow Doppler imaging. Real-time three-dimensional echocardiography (RT3D-TTE) visualized a large defect of interatrial septum clearly (Fig. 2). The patient was referred for surgery. Only a tiny vestige of the interatrial septum could be confirmed with the naked eye, and the two atrioventricular valves were normal. The patch closure was performed successfully using a fresh autologous pericardial patch. Atrial septal defect (ASD) is a common congenital heart disease presenting in adulthood. Our patient showed a large secundum ASD like single atrium. It is sometimes difficult to distinguish a large secundum ASD from a single atrium. Levy et al. recommended that the term ‘‘single atrium’’ should be used to denote a condition comprising: (1) complete absence of the interatrial septum, (2) absence of malformation of the atrioventricular valves, and (3) absence of interventricular communication [1]. In our case, the morphological diagnosis was supposed to be a large secundum type atrial septal defect, because a small part of the interatrial septum was found. In this case, RT3D-TTE enhanced the understanding of the anatomy and spatial relationship between the defect and its adjacent structure. Previous study has shown the usefulness of RT3D-TTE for patient selection for surgical or transcatheter closure of atrial septal defects. It has been reported that RT3D-TTE allows accurate determination of the ASD location, ASD size, and surrounding tissue of the interatrial septum [2, 3]. Although our patient demonstrated a large part to be missing from the interatrial septum, RT3D-TTE could clearly visualize a large defect of the interatrial septum. RT3D-TTE provided additional, clinically relevant qualitative information for the evaluation of this patient with a large defect of the interatrial septum. N. Watanabe Y. Tanabe Division of Medical Support, Okayama University Hospital, Okayama, Japan
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- 2009
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39. Impaired right ventricular myocardial perfusion and right ventricular dysfunction in patients with pulmonary arterial hypertension: a study of contrast echocardiography and strain imaging
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Kengo Kusano, K. Nakamura, Satoko Ugawa, Hiroshi Morita, Yasuharu Tanabe, Norihisa Toh, Nobuhisa Watanabe, Y. Oono, Hiroshi Ito, and Hiroki Oe
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medicine.medical_specialty ,business.industry ,Ultrasound ,Ischemia ,medicine.disease ,Intensity (physics) ,Internal medicine ,medicine ,Cardiology ,In patient ,Systole ,Cardiology and Cardiovascular Medicine ,business ,Prospective cohort study ,Apical four chamber view ,Perfusion - Abstract
Background: Little is known about right ventricular (RV) dysfunction in patient with pulmonary arterial hypertension (PAH). Recently, RV ischemia has been reported to be a contributory factor in the development of RV dysfunction. The aim of this study is to evaluate RV myocardial perfusion and assess its relationship with RV dysfunction. Methods: This prospective study consisted of 10 consecutive patients (7 female, 51±17 years) with PAH (6 idiopathic PAH (IPAH), and 4 chronic thromboembolic pulmonary hypertension (CTEPH)), and 6 healthy controls (3 females, 37±6 years). Quantitative myocardial contrast echocardiography (MCE) was performed using Philips iE33 imaging system with an S5-1 probe. We depicted the apical four chamber view. A solution of Levovist (300mg/ml) was inravenously administered at a rate of 3ml/min with a volumetric pump. End-systolic images were obtained every four heart beats. The MCE images were analyzed off-line using VoluMap-445 system. The RV myocardium was divided into six segments, at each myocardial segment, calibrated contrast intensity (CI) was determined as the difference (dB) between the mean myocardial CI and cavity CI. 2D speckle tracking echocardiographic study was also performed using Vivid E9 ultrasound system. Results: Among 96 RV myocardial segments, quantitative CI analysis was possible in 86 segments (90%). RV fractional area change was 46% (healthy), 34% (CTEPH) and 25% (IPAH). Mean calibrated CI of RV free wall was -13.4dB, -19.3dB and -22.8dB, respectively (p=0.01). We found good inverse correlation between calibrated CI and longitudinal strain of RV free wall (r=-0.5, p=0.0013). ![Figure][1] Conclusion: Quantitative MCE revealed patients with PAH have impaired RV myocardial perfusion, and this correlated well with the RV longitudinal myocardial dysfunction. [1]: pending:yes
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- 2013
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40. 1PT102 Structural change at the flap region of HIV-1 protease associated with darunavir resistance(The 50th Annual Meeting of the Biophysical Society of Japan)
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Hirotaka Ode, Koji Suzuki, Junko Hattori, Atsuo Suzuki, Yasumasa Iwatani, Masami Maejima, Yuki Kimura, Nobuhisa Watanabe, Wataru Sugiura, Takashi Masaoka, Masayuki Fujino, and Yoshiyuki Yokomaku
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Resistance (ecology) ,HIV-1 protease ,Environmental protection ,medicine ,biology.protein ,Biology ,Virology ,Darunavir ,medicine.drug - Published
- 2012
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41. Studies on the Relationship Between Desmosomes and Metastasis and Prognosis of Esophageal Cancer
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Masayuki Matsumori, Tetsuya Hattori, Sakan Maeda, Satoru Hayashi, Takashi Koyama, Masayoshi Okada, Nobuhisa Watanabe, and Toshihiro Omori
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Oncology ,medicine.medical_specialty ,Pathology ,Urinary bladder ,business.industry ,Adhesion ,Esophageal cancer ,medicine.disease ,Cell junction ,Metastasis ,Transitional cell carcinoma ,medicine.anatomical_structure ,Desmosome ,Internal medicine ,medicine ,Transitional Cell ,business - Abstract
Desmosomes are intercellular junctions, particularly characteristic of epithelial cells, and they are major contributors to cell-cell adhesion in many epithelial cells. Decreased intercellular adhesion has been reported for many carcinomas, and it has been suggested that in part, such alterations in adhesion may be due to changes in adhering junctions, such as the desmosome [1]. In the human urinary bladder, a correlation between decreased numbers of desmosomes and aggressiveness of transitional cell carcinomas has been reported [2]. To define highly malignant esophageal squamous cell carcinoma (SCC) we have investigated the relationship of desmosome numbers to tumor invasiveness and metastasis in esophageal SCCs in a quantitative electron microscopic study [3]. We have also studied this structure with reference to outcome, because all cases studied had been followed for at least 5 years.
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- 1993
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42. The MinD protein from the hyperthermophilic archaeonPyrococcus horikoshii: crystallization and preliminary X-ray analysis
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Hiroshi Itou, Naoki Sakai, Isao Tanaka, Nobuhisa Watanabe, and Min Yao
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Adenosine Triphosphatases ,Pyrococcus ,biology ,Protein Conformation ,Archaeal Proteins ,Escherichia coli Proteins ,Resolution (electron density) ,General Medicine ,Crystallography, X-Ray ,medicine.disease_cause ,biology.organism_classification ,Recombinant Proteins ,law.invention ,Pyrococcus horikoshii ,Crystallography ,Structural Biology ,law ,medicine ,Atpase activity ,Molecule ,Cloning, Molecular ,Crystallization ,X ray analysis ,Escherichia coli - Abstract
MinD is one of the proteins regulating cell division. MinD from Escherichia coli has been designated as a type of motor protein which has an ATPase activity. This paper deals with the first crystallization and preliminary crystallographic analysis of recombinant MinD from Pyrococcus horikoshii (molecular weight 26.3 kDa) expressed in E. coli. Crystals of MinD were obtained by the hanging-drop vapour-diffusion method. MinD crystals belong to space group P2(1)3, with unit-cell parameters a = b = c = 98.5 A, and diffract to 3.0 A resolution. The asymmetric units each contain one molecule of MinD, giving a crystal volume per protein mass (V(M)) of 3.0 A(3) Da(-1) and a solvent content of 59.0%.
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- 2001
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43. Structural analysis of a giant cell wall-associated adhesion protein Ebh fromStaphylococcus aureus
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Yong-Gui Gao, S. Sakamoto, Yuzuru Hiragi, Toshiko Ohta, Makoto Kuroda, Yoshikazu Tanaka, Isao Tanaka, Nobuhisa Watanabe, Kouhei Tsumoto, Shuichiro Goda, and Min Yao
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Structural Biology ,Staphylococcus aureus ,Chemistry ,Giant cell ,medicine ,medicine.disease_cause ,Adhesion protein ,Microbiology - Published
- 2008
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44. 1P016 Structural analysis of EbhA from Staphylococcus aureus(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
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Nobuhisa Watanabe, Isao Tanaka, Yoshikazu Tanaka, Makoto Kuroda, Toshiko Ohta, and Min Yao
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Protein structure ,Staphylococcus aureus ,medicine ,Session (computer science) ,Computational biology ,Biology ,medicine.disease_cause ,Bioinformatics - Published
- 2006
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45. 2P034 Crystal structure of Atlantic cod trypsin(29. Protein structure and dynamics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
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Haruo Sekizaki, Daisuke Iyaguchi, Nobuhisa Watanabe, Eiko Toyota, Midori Tateyama, Isao Tanaka, and Min Yao
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Protein structure ,biology ,Chemistry ,Stereochemistry ,medicine ,Crystal structure ,Session (computer science) ,Trypsin ,Atlantic cod ,biology.organism_classification ,medicine.drug - Published
- 2006
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46. Weissenberg camera for macromolecules with imaging-plate data collection system at PF, present status and future plan
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Shin-ichi Adachi, Kiwako Sakabe, Atsushi Nakagawa, Nobuhisa Watanabe, N. Sakabe, and Takahiko Higashi
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Engineering drawing ,medicine.medical_specialty ,Structural Biology ,Computer science ,medicine ,Medical physics ,Plan (drawing) ,Data collection system - Published
- 1993
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47. MODIFICATION OF FOREARM MOVEMENTS IN RESPONSE TO SUDDEN SHIFT OR DISAPPEARANCE OF A VISUAL TARGET AND ITS MODEL
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Takao Kurokawa and Nobuhisa Watanabe
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medicine.medical_specialty ,medicine.anatomical_structure ,Physical medicine and rehabilitation ,Forearm ,business.industry ,General Engineering ,medicine ,business - Published
- 1986
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48. Crystallographic Structure And Structural Stability Of Vertebrate Digestive Lysozyme
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Nobuhisa Watanabe, Masakatsu Kamiya, Yasuhiro Nonaka, Keiichi Kawano, Tomoyasu Aizawa, Makoto Demura, and Daisuke Akieda
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Protease ,medicine.medical_treatment ,digestive, oral, and skin physiology ,Biophysics ,Biology ,biology.organism_classification ,Bacterial cell structure ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Biochemistry ,Pepsin ,Digestive enzyme ,biology.protein ,medicine ,Peptidoglycan ,Lysozyme ,Bacteria - Abstract
C-type lysozyme catalyzes the hydrolysis of peptidoglycan of bacterial cell wall. Most of C-type lysozymes express to protect body against bacterial infection. However, ruminants and some leaf-eating animals have evolved their lysozyme as digestive enzyme. They recruit bacteria which ferment cellulose in the foregut, and digest the bacteria by lysozyme in the true stomach to obtain nutrient. Digestive lysozyme has acquired some properties, such as low optimal pH, and resistance to protease and acid hydrolysis. The structural basis for these properties still remains unclear. In this investigation, we have obtained the crystallographic structure of bovine stomach lysozyme (BSL). This is the first report on the structure of vertebrate digestive lysozyme. We have carried out the denaturant-unfolding experiment and revealed that BSL has high structural stability at acidic pH compared to non-digestive (hen egg-white) lysozyme. The structural stability in acidic solution would be related to the pepsin resistance which was previously reported for BSL. The crystal structure of BSL suggested that negatively charged surfaces, a shortened loop, and salt bridges should provide the structural stability.
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